YOGY Home YOGY Help

Search term: YAL020C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ATS1
SGD link S000000018
Alternative ID YAL020C
Description Protein required, with Elongator complex, Kti11p, and Kti12p, for modification of wobble nucleosides in tRNA; has a potential role in regulatory interactions between microtubules and the cell cycle
Synonyms YAL020C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1426 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED FOG: RCC1 domain

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g27060 GI:15223423
Arabidopsis thaliana (Ath) At3g02300 GI:15232881
Arabidopsis thaliana (Ath) At3g02510 GI:15232921
Arabidopsis thaliana (Ath) At3g03790 GI:15228636
Arabidopsis thaliana (Ath) At3g15430 GI:18400769
Arabidopsis thaliana (Ath) At3g26100 GI:9279617
Arabidopsis thaliana (Ath) At3g53830 GI:15232347
Arabidopsis thaliana (Ath) At3g55580 GI:15233306
Arabidopsis thaliana (Ath) At5g11580 GI:11290074
Arabidopsis thaliana (Ath) At5g16040 GI:15237253
Arabidopsis thaliana (Ath) At5g48330 GI:15238941
Arabidopsis thaliana (Ath) At5g60870 GI:15239463
Arabidopsis thaliana (Ath) At5g63860 GI:15237540
Caenorhabditis elegans (Cel) CE03024
(WBGene00004304)		 GI:17532079 Q18211
Caenorhabditis elegans (Cel) CE07026 GI:17559318
Caenorhabditis elegans (Cel) CE12118 GI:17508207
Caenorhabditis elegans (Cel) CE19021 GI:17509665
Drosophila melanogaster (Dme) 7295409 GI:18859625
Drosophila melanogaster (Dme) 7295603 GI:7295603
Drosophila melanogaster (Dme) 7296072 GI:7296072
Drosophila melanogaster (Dme) 7296158 GI:7296158 Q9VPU0
Drosophila melanogaster (Dme) 7296478_1 GI:7296478
Drosophila melanogaster (Dme) 7300793 GI:7300793
Drosophila melanogaster (Dme) 7301836 GI:7301836
Homo sapiens (Hsa) Hs13540582
(WBSCR16)		 GI:13540582 Q96I51
Homo sapiens (Hsa) Hs15809006 GI:15809006
Homo sapiens (Hsa) Hs16716337_1 GI:16716337
Homo sapiens (Hsa) Hs17487390 GI:17487390
Homo sapiens (Hsa) Hs19311016_2 GI:19311016
Homo sapiens (Hsa) Hs19923519 GI:19923519
Homo sapiens (Hsa) Hs20483283 GI:20483283
Homo sapiens (Hsa) Hs20486176 GI:20486176
Homo sapiens (Hsa) Hs20554048 GI:20554048
Homo sapiens (Hsa) Hs22049475 GI:22049475
Homo sapiens (Hsa) Hs22056083 GI:22056083
Homo sapiens (Hsa) Hs22056692_2 GI:22056692
Homo sapiens (Hsa) Hs22057585 GI:22057585
Homo sapiens (Hsa) Hs22057603_2 GI:22057603
Homo sapiens (Hsa) Hs22069295 GI:22069295
Homo sapiens (Hsa) Hs22069570 GI:22069570
Homo sapiens (Hsa) Hs4502801 GI:4502801 P18754
Homo sapiens (Hsa) Hs4506581_1 GI:4506581 Q92834
Homo sapiens (Hsa) Hs4557026 GI:4557026
Homo sapiens (Hsa) Hs4557445
(RCBTB2)		 GI:4557445 O95199
Homo sapiens (Hsa) Hs4758520 GI:4758520
Homo sapiens (Hsa) Hs6912330
(SERGEF)		 GI:6912330 Q9UGK8
Saccharomyces cerevisiae (Sce) YAL020c
(S000000018)		 GI:6319299 P31386
Saccharomyces cerevisiae (Sce) YGL097w
(S000003065)		 GI:6321341 P21827
Saccharomyces cerevisiae (Sce) YLR077w
(S000004067)		 GI:6323106 Q08023
Schizosaccharomyces pombe (Spo) SPAC10F6.04 GI:19114167 O42645
Schizosaccharomyces pombe (Spo) SPBC557.03c GI:19112818 P28745
Encephalitozoon cuniculi (Ecu) ECU04g1500 GI:19074229 Q8SS12


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IDA
SceS000003065
NAS
SpoSPBC557.03c
GO:0005575 cellular_component C
ND
AthAt3g15430
At5g11580
At3g02300
At1g27060
At5g16040
At3g53830
At3g55580
At3g02510
HsaWBSCR16
GO:0005634 nucleus C
IDA
AthAt5g63860
HsaSERGEF
SceS000003065
SpoSPAC10F6.04
SPBC557.03c
GO:0005737 cytoplasm C
IDA
HsaSERGEF
SceS000000018
IPI
SceS000000018
ISS
SpoSPAC10F6.04
GO:0005739 mitochondrion C
IDA
SceS000004067
GO:0005829 cytosol C
IDA
AthAt5g63860
SpoSPAC10F6.04
GO:0003674 molecular_function F
ND
SceS000000018
S000004067
SpoSPAC10F6.04
GO:0003682 chromatin binding F
IDA
AthAt5g63860
ISS
AthAt3g02510
At3g53830
At5g11580
At5g16040
GO:0004871 signal transducer activity F
IMP
SceS000003065
GO:0005085 guanyl-nucleotide exchange factor
activity		 F
ISS
AthAt5g63860
GO:0005087 Ran guanyl-nucleotide exchange factor
activity		 F
IGI
SpoSPBC557.03c
TAS
HsaSERGEF
RCBTB2
GO:0005488 binding F
ISS
AthAt3g03790
At5g48330
At3g55580
GO:0005515 protein binding F
IPI
HsaSERGEF
GO:0008536 Ran GTPase binding F
ISS
AthAt3g02510
At5g16040
At3g02300
At1g27060
At5g11580
At5g60870
At3g15430
At3g53830
At3g26100
GO:0000003 reproduction P
IMP
CelWBGene00004304
GO:0000054 ribosomal subunit export from nucleus P
IMP
SceS000003065
GO:0000226 microtubule cytoskeleton organization P
IGI
SceS000000018
IMP
SceS000000018
GO:0000910 cytokinesis P
IMP
CelWBGene00004304
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000000018
GO:0002119 nematode larval development P
IMP
CelWBGene00004304
GO:0006400 tRNA modification P
ISS
SpoSPAC10F6.04
GO:0006406 mRNA export from nucleus P
IMP
SpoSPBC557.03c
GO:0006407 rRNA export from nucleus P
IMP
SceS000003065
ISS
SpoSPBC557.03c
GO:0006414 translational elongation P
RCA
SceS000000018
GO:0007017 microtubule-based process P
IGI
SceS000000018
ISS
SceS000000018
SpoSPAC10F6.04
GO:0007052 mitotic spindle organization P
IMP
CelWBGene00004304
GO:0007093 mitotic cell cycle checkpoint P
IMP
SpoSPBC557.03c
GO:0007117 budding cell bud growth P
IGI
SceS000000018
IMP
SceS000000018
GO:0007165 signal transduction P
TAS
HsaSERGEF
GO:0007264 small GTPase mediated signal transduction P
IC
SpoSPBC557.03c
GO:0007346 regulation of mitotic cell cycle P
IMP
SpoSPBC557.03c
GO:0008150 biological_process P
ND
AthAt5g48330
At1g27060
At3g03790
At5g60870
At3g15430
At3g02510
At5g16040
At3g26100
At5g11580
At3g53830
At3g55580
At3g02300
HsaWBSCR16
SceS000004067
GO:0009411 response to UV P
IMP
AthAt5g63860
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004304
GO:0010224 response to UV-B P
IEP
AthAt5g63860
IGI
AthAt5g63860
GO:0016246 RNA interference P
IMP
CelWBGene00004304
GO:0030071 regulation of mitotic metaphase/anaphase
transition		 P
IMP
SpoSPBC557.03c
GO:0031291 Ran protein signal transduction P
IGI
SpoSPBC557.03c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004304
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004304
GO:0050709 negative regulation of protein
secretion		 P
IDA
HsaSERGEF
GO:0051301 cell division P
IMP
CelWBGene00004304
GO:0060623 regulation of chromosome condensation P
IGI
SpoSPBC557.03c
GO:0090307 spindle assembly involved in mitosis P
TAS
SpoSPBC557.03c

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40812

Species Gene ID NCBI link UniProt link
Mus musculus (Mmu) Sergef
(MGI:1351630)		 GI:7305093 Q80YD6
Rattus norvegicus (Rno) Sergef GI:109458765
Gallus gallus (Gga) SERGEF GI:118091281
Drosophila melanogaster (Dme) CG7420
(FBgn0031344)		 GI:19920516
Anopheles gambiae (Aga) AgaP_AGAP008272 GI:158296855
Schizosaccharomyces pombe (Spo) SPAC10F6.04 GI:19114167 O42645
Saccharomyces cerevisiae (Sce) ATS1
(S000000018)		 GI:6319299 P31386
Kluyveromyces lactis (Kla) KLLA0F15906g GI:50311543
Eremothecium gossypii (Ego) AGOS_ACR287W GI:45185973
Magnaporthe grisea (Mgr) MGG_05277 GI:39939926
Neurospora crassa (Ncr) NCU00469.1 GI:32403884


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
MmuMGI:1351630
SpoSPAC10F6.04
GO:0005737 cytoplasm C
IDA
MmuMGI:1351630
SceS000000018
IPI
SceS000000018
ISS
SpoSPAC10F6.04
GO:0005829 cytosol C
IDA
SpoSPAC10F6.04
GO:0003674 molecular_function F
ND
SceS000000018
SpoSPAC10F6.04
GO:0005087 Ran guanyl-nucleotide exchange factor
activity		 F
ISA
MmuMGI:1351630
GO:0000226 microtubule cytoskeleton organization P
IGI
SceS000000018
IMP
SceS000000018
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000000018
GO:0006400 tRNA modification P
ISS
SpoSPAC10F6.04
GO:0006414 translational elongation P
RCA
SceS000000018
GO:0007017 microtubule-based process P
IGI
SceS000000018
ISS
SceS000000018
SpoSPAC10F6.04
GO:0007117 budding cell bud growth P
IGI
SceS000000018
IMP
SceS000000018
GO:0050790 regulation of catalytic activity P
ISA
MmuMGI:1351630

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_8099

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10252 ENSANGP00000011952
Candida glabrata (Cgl) cgl2330 CAGL0H06171g
Debaryomyces hansenii (Dha) dha2178 DEHA0C16907g
Drosophila melanogaster (Dme) dme252 CG7420-PA
(FBgn0031344)
Danio rerio (Dre) dre16588 ENSDARP00000025923
Takifugu rubripes (Fru) fru32742 SINFRUP00000151655
Gallus gallus (Gga) gga18850 ENSGALP00000010058
(SERGEF)
Homo sapiens (Hsa) hsa5269 ENSP00000265965
(SERGEF)		 Q9UGK8-1
Kluyveromyces lactis (Kla) kla4796 KLLA0F15906g
Mus musculus (Mmu) mmu24006 ENSMUSP00000033127
(MGI:1351630)		 Q80YD6
Rattus norvegicus (Rno) rno1916 ENSRNOP00000015352
(RGD:1563497)
Saccharomyces cerevisiae (Sce) sce22 YAL020C
(S000000018)
Yarrowia lipolytica (Yli) yli5220 YALI0E32615g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
MmuMGI:1351630
GO:0005737 cytoplasm C
IDA
MmuMGI:1351630
SceS000000018
IPI
SceS000000018
GO:0003674 molecular_function F
ND
SceS000000018
GO:0005087 Ran guanyl-nucleotide exchange factor
activity		 F
ISA
MmuMGI:1351630
GO:0000226 microtubule cytoskeleton organization P
IGI
SceS000000018
IMP
SceS000000018
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000000018
GO:0006414 translational elongation P
RCA
SceS000000018
GO:0007017 microtubule-based process P
IGI
SceS000000018
ISS
SceS000000018
GO:0007117 budding cell bud growth P
IGI
SceS000000018
IMP
SceS000000018
GO:0050790 regulation of catalytic activity P
ISA
MmuMGI:1351630

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC10F6.04
(O42645)		 YAL020C
(S000000018)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC10F6.04
GO:0005737 cytoplasm C
IDA
SceS000000018
IPI
SceS000000018
ISS
SpoSPAC10F6.04
GO:0005829 cytosol C
IDA
SpoSPAC10F6.04
GO:0003674 molecular_function F
ND
SceS000000018
SpoSPAC10F6.04
GO:0000226 microtubule cytoskeleton organization P
IGI
SceS000000018
IMP
SceS000000018
GO:0002098 tRNA wobble uridine modification P
IMP
SceS000000018
GO:0006400 tRNA modification P
ISS
SpoSPAC10F6.04
GO:0006414 translational elongation P
RCA
SceS000000018
GO:0007017 microtubule-based process P
IGI
SceS000000018
ISS
SceS000000018
SpoSPAC10F6.04
GO:0007117 budding cell bud growth P
IGI
SceS000000018
IMP
SceS000000018

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk