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Search term: YAL025C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name MAK16
SGD link S000000023
Alternative ID YAL025C
Description Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25S and 5.8S rRNAs; required for maintenance of M1 satellite double-stranded RNA of the L-A virus
Synonyms YAL025C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3064 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g23280 GI:15220695
Caenorhabditis elegans (Cel) CE04006
(WBGene00015811)		 GI:17552204 Q18035
Drosophila melanogaster (Dme) 7290981
(Rbm13)		 GI:18857961
Homo sapiens (Hsa) Hs14210516 GI:14210516
Saccharomyces cerevisiae (Sce) YAL025c
(S000000023)		 GI:6319294 P10962
Schizosaccharomyces pombe (Spo) SPAC222.06 GI:19114057 Q9UTE6
Encephalitozoon cuniculi (Ecu) ECU10g0830 GI:19074692 Q8SR41


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g23280
GO:0005634 nucleus C
IDA
SpoSPAC222.06
GO:0005730 nucleolus C
IDA
SceS000000023
ISS
SpoSPAC222.06
GO:0005829 cytosol C
IDA
SpoSPAC222.06
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000023
GO:0003674 molecular_function F
ND
AthAt1g23280
SceS000000023
SpoSPAC222.06
GO:0000003 reproduction P
IMP
CelWBGene00015811
GO:0000022 mitotic spindle elongation P
IMP
DmeRbm13
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0002119 nematode larval development P
IMP
CelWBGene00015811
GO:0008150 biological_process P
ND
AthAt1g23280
GO:0009451 RNA modification P
RCA
SceS000000023
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00015811
GO:0040007 growth P
IMP
CelWBGene00015811
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015811
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00015811
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC222.06
GO:0042273 ribosomal large subunit biogenesis P
IMP
SceS000000023

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5296

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) MAK16 GI:31543091
Pan troglodytes (Ptr) MAK16 GI:114619629
Canis familiaris (Cfa) MAK16 GI:73979341
Mus musculus (Mmu) Mak16
(MGI:1915170)		 GI:33468997 Q8BGS0
Rattus norvegicus (Rno) Mak16 GI:62078733
Gallus gallus (Gga) RBM13 GI:118101352
Drosophila melanogaster (Dme) Rbm13 GI:18857961
Anopheles gambiae (Aga) AgaP_AGAP000514 GI:158288730
Caenorhabditis elegans (Cel) C16A3.6
(CE04006;
WBGene00015811)		 GI:17552204 Q18035
Schizosaccharomyces pombe (Spo) mak16
(SPAC222.06)		 GI:19114057 Q9UTE6
Saccharomyces cerevisiae (Sce) MAK16
(S000000023)		 GI:6319294 P10962
Kluyveromyces lactis (Kla) KLLA0A04037g GI:50302487
Eremothecium gossypii (Ego) AGOS_ADR349W GI:45188222
Magnaporthe grisea (Mgr) MGG_04069 GI:39944116
Neurospora crassa (Ncr) NCU04150.1 GI:32405754
Arabidopsis thaliana (Ath) AT1G23280 GI:15220695
Oryza sativa (Osa) Os07g0270900 GI:115471489
Oryza sativa (Osa) Os07g0271600 GI:115471495
Plasmodium falciparum (Pfa) PFB0175c GI:124800741


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g23280
MmuMGI:1915170
GO:0005634 nucleus C
IDA
SpoSPAC222.06
GO:0005730 nucleolus C
IDA
SceS000000023
ISS
SpoSPAC222.06
GO:0005829 cytosol C
IDA
SpoSPAC222.06
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000023
GO:0003674 molecular_function F
ND
AthAt1g23280
MmuMGI:1915170
SceS000000023
SpoSPAC222.06
GO:0000003 reproduction P
IMP
CelWBGene00015811
GO:0000022 mitotic spindle elongation P
IMP
DmeRbm13
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0002119 nematode larval development P
IMP
CelWBGene00015811
GO:0008150 biological_process P
ND
AthAt1g23280
MmuMGI:1915170
GO:0009451 RNA modification P
RCA
SceS000000023
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00015811
GO:0040007 growth P
IMP
CelWBGene00015811
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015811
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00015811
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC222.06
GO:0042273 ribosomal large subunit biogenesis P
IMP
SceS000000023

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1742

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga15146 ENSANGP00000019444
Ashbya gossypii (Ago) ago2090 ADR349W
Arabidopsis thaliana (Ath) ath2505 At1g23280.1
Caenorhabditis elegans (Cel) cel2113 C16A3.6
(CE04006;
WBGene00015811)
Candida glabrata (Cgl) cgl1263 CAGL0F00715g
Candida glabrata (Cgl) cgl1894 CAGL0G06248g
Cryptococcus neoformans (Cne) cne1408 180.m00356
Dictyostelium discoideum (Ddi) ddi477 DDB0190424
Debaryomyces hansenii (Dha) dha4480 DEHA0F02112g
Drosophila melanogaster (Dme) dme17058 CG10648-PA
(FBgn0030067)
Danio rerio (Dre) dre16233 ENSDARP00000004531
Encephalitozoon cuniculi (Ecu) ecu608 19074692
Takifugu rubripes (Fru) fru30991 SINFRUP00000163244
Takifugu rubripes (Fru) fru30990 SINFRUP00000163247
Gallus gallus (Gga) gga24286 ENSGALP00000002546
(RBM13)
Homo sapiens (Hsa) hsa30153 ENSP00000353246
(MAK16)		 Q9BXY0
Kluyveromyces lactis (Kla) kla175 KLLA0A04037g
Mus musculus (Mmu) mmu25818 ENSMUSP00000033983
(MGI:1915170)		 Q8BGS0-1
Neurospora crassa (Ncr) ncr4026 NCU04150.2
Oryza sativa (Osa) osa3967 2077.m00127
Oryza sativa (Osa) osa3981 2077.m00161
Oryza sativa (Osa) osa34874 4719.m00141
Oryza sativa (Osa) osa39035 5085.m00077
Oryza sativa (Osa) osa77564 7322.m00105
Plasmodium falciparum (Pfa) pfa207 PFB0175c
Rattus norvegicus (Rno) rno12580 ENSRNOP00000015297
(RGD:1311297)		 Q5EB56
Saccharomyces cerevisiae (Sce) sce27 YAL025C
(S000000023)
Schizosaccharomyces pombe (Spo) spo3383 SPAC222.06 Q9UTE6
Yarrowia lipolytica (Yli) yli2044 YALI0C08052g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g23280
MmuMGI:1915170
GO:0005634 nucleus C
IDA
SpoSPAC222.06
GO:0005730 nucleolus C
IDA
SceS000000023
ISS
SpoSPAC222.06
GO:0005829 cytosol C
IDA
SpoSPAC222.06
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000023
GO:0003674 molecular_function F
ND
AthAt1g23280
MmuMGI:1915170
SceS000000023
SpoSPAC222.06
GO:0000003 reproduction P
IMP
CelWBGene00015811
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0030067
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0002119 nematode larval development P
IMP
CelWBGene00015811
GO:0008150 biological_process P
ND
AthAt1g23280
MmuMGI:1915170
GO:0009451 RNA modification P
RCA
SceS000000023
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00015811
GO:0040007 growth P
IMP
CelWBGene00015811
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015811
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00015811
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC222.06
GO:0042273 ribosomal large subunit biogenesis P
IMP
SceS000000023

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC222.06
(Q9UTE6)		 YAL025C
(S000000023)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC222.06
GO:0005730 nucleolus C
IDA
SceS000000023
ISS
SpoSPAC222.06
GO:0005829 cytosol C
IDA
SpoSPAC222.06
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000023
GO:0003674 molecular_function F
ND
SceS000000023
SpoSPAC222.06
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000000023
GO:0009451 RNA modification P
RCA
SceS000000023
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC222.06
GO:0042273 ribosomal large subunit biogenesis P
IMP
SceS000000023

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk