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Search term: YAL039C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CYC3
SGD link S000000037
Alternative ID YAL039C
Description Cytochrome c heme lyase (holocytochrome c synthase), attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS)
Synonyms YAL039C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3996 -CDHYP-

KOGs classification KOGs description
METABOLISMCELLULAR PROCESSES AND SIGNALING Holocytochrome c synthase/heme-lyase

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE02327
(WBGene00011527)		 GI:17536071 P53703
Drosophila melanogaster (Dme) 7300803 GI:7300803
Homo sapiens (Hsa) Hs4885401 GI:4885401
Saccharomyces cerevisiae (Sce) YAL039c
(S000000037)		 GI:6319278 P06182
Saccharomyces cerevisiae (Sce) YKL087c
(S000001570)		 GI:6322763 Q00873
Schizosaccharomyces pombe (Spo) SPAC24C9.02c GI:19114938 O13962
Schizosaccharomyces pombe (Spo) SPBC26H8.12 GI:19113447 O74794


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC24C9.02c
GO:0005739 mitochondrion C
IDA
SceS000001570
S000000037
SpoSPBC26H8.12
GO:0005758 mitochondrial intermembrane space C
IDA
SceS000001570
S000000037
ISS
SpoSPAC24C9.02c
SPBC26H8.12
GO:0005829 cytosol C
IDA
SpoSPAC24C9.02c
GO:0004408 holocytochrome-c synthase activity F
IDA
SceS000000037
IMP
SceS000001570
ISS
SceS000001570
SpoSPBC26H8.12
SPAC24C9.02c
GO:0000003 reproduction P
IMP
CelWBGene00011527
GO:0002119 nematode larval development P
IMP
CelWBGene00011527
GO:0006414 translational elongation P
RCA
SceS000000037
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00011527
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00011527
GO:0009636 response to toxin P
RCA
SceS000001570
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011527
GO:0018063 cytochrome c-heme linkage P
IDA
SceS000000037
IMP
SceS000001570
ISS
SceS000001570
SpoSPAC24C9.02c
SPBC26H8.12
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00011527
GO:0040007 growth P
IMP
CelWBGene00011527
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00011527

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
31438

Species Gene ID NCBI link UniProt link
Drosophila melanogaster (Dme) Cchl GI:24648883
Anopheles gambiae (Aga) AgaP_AGAP003843 GI:58380235
Caenorhabditis elegans (Cel) cchl-1
(CE02327;
WBGene00011527)		 GI:17536071 P53703
Schizosaccharomyces pombe (Spo) SPBC26H8.12 GI:19113447 O74794
Saccharomyces cerevisiae (Sce) CYC3
(S000000037)		 GI:6319278 P06182
Kluyveromyces lactis (Kla) KLLA0C13123g GI:50305649
Eremothecium gossypii (Ego) AGOS_ADR382W GI:45188255
Magnaporthe grisea (Mgr) MGG_05607 GI:39941392
Neurospora crassa (Ncr) NCU05601.1 GI:32409951
Plasmodium falciparum (Pfa) PFL1185c GI:124806156


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
SceS000000037
SpoSPBC26H8.12
GO:0005743 mitochondrial inner membrane C
ISS
DmeCchl
PfaPFL1185c
GO:0005758 mitochondrial intermembrane space C
IDA
SceS000000037
ISS
SpoSPBC26H8.12
GO:0004408 holocytochrome-c synthase activity F
IDA
SceS000000037
ISS
DmeCchl
SpoSPBC26H8.12
GO:0000003 reproduction P
IMP
CelWBGene00011527
GO:0002119 nematode larval development P
IMP
CelWBGene00011527
GO:0006414 translational elongation P
RCA
SceS000000037
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00011527
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00011527
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011527
GO:0018063 cytochrome c-heme linkage P
IDA
SceS000000037
ISS
DmeCchl
PfaPFL1185c
SpoSPBC26H8.12
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00011527
GO:0040007 growth P
IMP
CelWBGene00011527
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00011527

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1353

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6337 ENSANGP00000005619
Ashbya gossypii (Ago) ago1896 ADR154W
Ashbya gossypii (Ago) ago2123 ADR382W
Caenorhabditis elegans (Cel) cel14762 T06D8.6
(CE02327;
WBGene00011527)
Candida glabrata (Cgl) cgl4308 CAGL0L05280g
Candida glabrata (Cgl) cgl5178 CAGL0M12012g
Cryptococcus neoformans (Cne) cne1336 180.m00283
Cryptococcus neoformans (Cne) cne1833 181.m07802
Dictyostelium discoideum (Ddi) ddi3955 DDB0217711
Debaryomyces hansenii (Dha) dha3799 DEHA0E12628g
Debaryomyces hansenii (Dha) dha6564 DEHA0G19305g
Drosophila melanogaster (Dme) dme13780 CG6022-PA
(FBgn0038925)
Danio rerio (Dre) dre27510 ENSDARP00000011049
(hccs)		 Q803H2
Danio rerio (Dre) dre10917 ENSDARP00000029466
(hccsa)		 Q6DGN8
Takifugu rubripes (Fru) fru26536 SINFRUP00000133442
Gallus gallus (Gga) gga22457 ENSGALP00000008922
(HCCS)		 Q5F339
Gallus gallus (Gga) gga22456 ENSGALP00000008923
(HCCS)		 Q5F339
Homo sapiens (Hsa) hsa32428 ENSP00000326579
(HCCS)		 P53701
Kluyveromyces lactis (Kla) kla1784 KLLA0C13123g
Kluyveromyces lactis (Kla) kla5233 KLLA0F25894g
Mus musculus (Mmu) mmu29895 ENSMUSP00000033717
(MGI:106911)		 Q6P5G5
Neurospora crassa (Ncr) ncr5442 NCU05601.2
Neurospora crassa (Ncr) ncr7930 NCU08138.2
Plasmodium falciparum (Pfa) pfa5348 PFL0180w
Plasmodium falciparum (Pfa) pfa5020 PFL1185c
Rattus norvegicus (Rno) rno31237 ENSRNOP00000034552
(RGD:1563855)
Saccharomyces cerevisiae (Sce) sce47 YAL039C
(S000000037)
Saccharomyces cerevisiae (Sce) sce3753 YKL087C
(S000001570)
Schizosaccharomyces pombe (Spo) spo1001 SPAC24C9.02c O13962
Schizosaccharomyces pombe (Spo) spo699 SPBC26H8.12 O74794
Yarrowia lipolytica (Yli) yli2248 YALI0C12918g
Yarrowia lipolytica (Yli) yli4124 YALI0E06215g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC24C9.02c
GO:0005739 mitochondrion C
IDA
MmuMGI:106911
SceS000001570
S000000037
SpoSPBC26H8.12
ISO
MmuMGI:106911
GO:0005743 mitochondrial inner membrane C
ISS
DmeFBgn0038925
PfaPFL1185c
PFL0180w
GO:0005758 mitochondrial intermembrane space C
IDA
SceS000001570
S000000037
ISS
SpoSPAC24C9.02c
SPBC26H8.12
GO:0005829 cytosol C
IDA
SpoSPAC24C9.02c
GO:0004408 holocytochrome-c synthase activity F
IDA
SceS000000037
IMP
SceS000001570
ISS
DmeFBgn0038925
SceS000001570
SpoSPBC26H8.12
SPAC24C9.02c
GO:0000003 reproduction P
IMP
CelWBGene00011527
GO:0002119 nematode larval development P
IMP
CelWBGene00011527
GO:0006414 translational elongation P
RCA
SceS000000037
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00011527
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00011527
GO:0009636 response to toxin P
RCA
SceS000001570
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011527
GO:0018063 cytochrome c-heme linkage P
IDA
SceS000000037
IMP
SceS000001570
ISS
DmeFBgn0038925
PfaPFL1185c
SceS000001570
SpoSPAC24C9.02c
SPBC26H8.12
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00011527
GO:0040007 growth P
IMP
CelWBGene00011527
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00011527

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC26H8.12
(O74794)		 YAL039C
(S000000037)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
SceS000000037
SpoSPBC26H8.12
GO:0005758 mitochondrial intermembrane space C
IDA
SceS000000037
ISS
SpoSPBC26H8.12
GO:0004408 holocytochrome-c synthase activity F
IDA
SceS000000037
ISS
SpoSPBC26H8.12
GO:0006414 translational elongation P
RCA
SceS000000037
GO:0018063 cytochrome c-heme linkage P
IDA
SceS000000037
ISS
SpoSPBC26H8.12

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GO info in one table:

s.khadayate@ucl.ac.uk