YOGY Home YOGY Help

Search term: YAR008W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SEN34
SGD link S000000066
Alternative ID YAR008W
Description Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen34p contains the active site for tRNA 3' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease
Synonyms YAR008W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4133 --DHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING tRNA splicing endonuclease

Species KOG link NCBI link UniProt link
Drosophila melanogaster (Dme) 7294360 GI:7294360
Homo sapiens (Hsa) Hs13129062 GI:13129062
Homo sapiens (Hsa) Hs20544678 GI:20544678
Saccharomyces cerevisiae (Sce) YAR008w
(S000000066)		 GI:6319322 P39707
Schizosaccharomyces pombe (Spo) SPBC19C7.07c GI:19112955 O60156


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0005739 mitochondrion C
IDA
SceS000000066
GO:0005741 mitochondrial outer membrane C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000000066
IMP
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000000066
IMP
SceS000000066
ISS
SceS000000066
SpoSPBC19C7.07c

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
44182

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) TSEN34 GI:116875840
Pan troglodytes (Ptr) TSEN34 GI:114679010
Canis familiaris (Cfa) TSEN34 GI:73947571
Mus musculus (Mmu) Tsen34
(MGI:1913328)		 GI:13195596 Q8BMZ5
Rattus norvegicus (Rno) Tsen34
(RGD:1359564)		 GI:55741514
Schizosaccharomyces pombe (Spo) sen34
(SPBC19C7.07c)		 GI:19112955 O60156
Saccharomyces cerevisiae (Sce) SEN34
(S000000066)		 GI:6319322 P39707
Kluyveromyces lactis (Kla) KLLA0A08932g GI:50302909
Eremothecium gossypii (Ego) AGOS_AFL012C GI:45198507
Magnaporthe grisea (Mgr) MGG_07082 GI:145612363
Neurospora crassa (Ncr) NCU08032.1 GI:32416520


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0005575 cellular_component C
ND
MmuMGI:1913328
GO:0005739 mitochondrion C
IDA
SceS000000066
GO:0005741 mitochondrial outer membrane C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000000066
IMP
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0005515 protein binding F
IPI
MmuMGI:1913328
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000000066
IMP
SceS000000066
ISS
SceS000000066
SpoSPBC19C7.07c
GO:0008150 biological_process P
ND
MmuMGI:1913328

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_5012

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9030 ENSANGP00000021215
Ashbya gossypii (Ago) ago3181 AFL012C
Caenorhabditis elegans (Cel) cel12242 K08D10.12
(CE31711;
WBGene00019535)
Candida glabrata (Cgl) cgl1656 CAGL0G00748g
Cryptococcus neoformans (Cne) cne5310 179.m00161
Debaryomyces hansenii (Dha) dha2163 DEHA0C16533g
Drosophila melanogaster (Dme) dme9517 CG33260-PA
(FBgn0053260)
Danio rerio (Dre) dre9537 ENSDARP00000043541
Homo sapiens (Hsa) hsa17071 ENSP00000305524
(TSEN34)		 Q9BSV6
Kluyveromyces lactis (Kla) kla389 KLLA0A08932g
Mus musculus (Mmu) mmu30910 ENSMUSP00000046911
(MGI:1913328)
Neurospora crassa (Ncr) ncr7824 NCU08032.2
Rattus norvegicus (Rno) rno778 ENSRNOP00000016198
(RGD:1359564)		 Q5XIB7
Saccharomyces cerevisiae (Sce) sce89 YAR008W
(S000000066)
Schizosaccharomyces pombe (Spo) spo3125 SPBC19C7.07c O60156
Yarrowia lipolytica (Yli) yli5041 YALI0E28600g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0005575 cellular_component C
ND
DmeFBgn0053260
MmuMGI:1913328
GO:0005739 mitochondrion C
IDA
SceS000000066
GO:0005741 mitochondrial outer membrane C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000000066
IMP
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0003674 molecular_function F
ND
DmeFBgn0053260
GO:0005515 protein binding F
IPI
MmuMGI:1913328
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000000066
IMP
SceS000000066
ISS
SceS000000066
SpoSPBC19C7.07c
GO:0008150 biological_process P
ND
DmeFBgn0053260
MmuMGI:1913328

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC19C7.07c
(O60156)		 YAR008W
(S000000066)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0005739 mitochondrion C
IDA
SceS000000066
GO:0005741 mitochondrial outer membrane C
IDA
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000000066
IMP
SceS000000066
ISS
SpoSPBC19C7.07c
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000000066
IMP
SceS000000066
ISS
SceS000000066
SpoSPBC19C7.07c

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk