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Search term: YBL026W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM2
SGD link S000000122
Alternative ID YBL026W
Description Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Synonyms YBL026W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3448 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Predicted snRNP core protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g03330 GI:18379085
Caenorhabditis elegans (Cel) CE23975 GI:17561850
Drosophila melanogaster (Dme) 7294589 GI:7294589 Q9VTW6
Homo sapiens (Hsa) Hs10863977
(LSM2)		 GI:10863977 Q9Y333
Saccharomyces cerevisiae (Sce) YBL026w
(S000000122)		 GI:6319445 P38203
Schizosaccharomyces pombe (Spo) SPCC1620.01c GI:19075959 O94408
Encephalitozoon cuniculi (Ecu) ECU09g1805 GI:19173302


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000122
GO:0005634 nucleus C
IDA
SpoSPCC1620.01c
ISS
AthAt1g03330
NAS
HsaLSM2
GO:0005681 spliceosomal complex C
NAS
SpoSPCC1620.01c
GO:0005688 U6 snRNP C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
TAS
SceS000000122
GO:0005730 nucleolus C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000122
ISS
AthAt1g03330
SpoSPCC1620.01c
GO:0005829 cytosol C
IDA
SpoSPCC1620.01c
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
GO:0003674 molecular_function F
ND
AthAt1g03330
GO:0003723 RNA binding F
IDA
SceS000000122
IPI
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005515 protein binding F
IPI
HsaLSM2
GO:0017070 U6 snRNA binding F
NAS
HsaLSM2
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000122
ISS
SpoSPCC1620.01c
NAS
HsaLSM2
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000122
GO:0006364 rRNA processing P
ISS
SpoSPCC1620.01c
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1620.01c
GO:0008380 RNA splicing P
EXP
HsaLSM2
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000000122

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48535

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) LSM2 GI:10863977 Q9Y333
Pan troglodytes (Ptr) LSM2 GI:114606503
Canis familiaris (Cfa) LSM2 GI:73972304
Mus musculus (Mmu) Lsm2
(MGI:90676)		 GI:13994221 O35900
Drosophila melanogaster (Dme) CG10418
(FBgn0036277)		 GI:21358381
Anopheles gambiae (Aga) AgaP_AGAP005136 GI:158292631
Caenorhabditis elegans (Cel) gut-2
(CE37990;
WBGene00001808)		 GI:72000505
Schizosaccharomyces pombe (Spo) lsm2
(SPCC1620.01c)		 GI:19075959 O94408
Saccharomyces cerevisiae (Sce) LSM2
(S000000122)		 GI:6319445 P38203
Kluyveromyces lactis (Kla) KLLA0F09207g GI:50310953
Eremothecium gossypii (Ego) AGOS_AFR182C GI:45198700
Magnaporthe grisea (Mgr) MGG_00355 GI:39974997
Neurospora crassa (Ncr) NCU07382.1 GI:32414377
Arabidopsis thaliana (Ath) AT1G03330 GI:18379085
Plasmodium falciparum (Pfa) PFE1020w GI:124506327


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000122
GO:0005634 nucleus C
IC
DmeFBgn0036277
IDA
SpoSPCC1620.01c
ISS
AthAt1g03330
NAS
HsaLSM2
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0036277
NAS
SpoSPCC1620.01c
GO:0005688 U6 snRNP C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
NAS
DmeFBgn0036277
TAS
SceS000000122
GO:0005730 nucleolus C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000122
ISS
AthAt1g03330
SpoSPCC1620.01c
GO:0005737 cytoplasm C
ISO
MmuMGI:90676
GO:0005829 cytosol C
IDA
SpoSPCC1620.01c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0036277
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000122
ISO
MmuMGI:90676
ISS
SpoSPCC1620.01c
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036277
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0036277
GO:0003674 molecular_function F
ND
AthAt1g03330
GO:0003723 RNA binding F
IDA
SceS000000122
IPI
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005515 protein binding F
IPI
HsaLSM2
MmuMGI:90676
GO:0017070 U6 snRNA binding F
NAS
HsaLSM2
GO:0019901 protein kinase binding F
IDA
MmuMGI:90676
GO:0000003 reproduction P
IMP
CelWBGene00001808
GO:0000244 assembly of spliceosomal tri-snRNP P
ISO
MmuMGI:90676
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0036277
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036277
IPI
SceS000000122
ISS
DmeFBgn0036277
SpoSPCC1620.01c
NAS
HsaLSM2
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000122
GO:0006364 rRNA processing P
ISS
SpoSPCC1620.01c
GO:0006402 mRNA catabolic process P
ISO
MmuMGI:90676
ISS
SpoSPCC1620.01c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00001808
GO:0008380 RNA splicing P
EXP
HsaLSM2
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00001808
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000000122
GO:0040007 growth P
IMP
CelWBGene00001808
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00001808
GO:0040011 locomotion P
IMP
CelWBGene00001808
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00001808

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2766

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga516 ENSANGP00000010025
Ashbya gossypii (Ago) ago3374 AFR182C
Arabidopsis thaliana (Ath) ath272 At1g03330.1
Caenorhabditis elegans (Cel) cel15240 T10G3.6
(CE37990;
WBGene00001808)
Candida glabrata (Cgl) cgl1844 CAGL0G05115g
Cryptococcus neoformans (Cne) cne5311 179.m00162
Dictyostelium discoideum (Ddi) ddi6864 DDB0204666
Debaryomyces hansenii (Dha) dha5393 DEHA0F22616g
Drosophila melanogaster (Dme) dme9229 CG10418-PA
(FBgn0036277)
Danio rerio (Dre) dre20445 ENSDARP00000009366
Encephalitozoon cuniculi (Ecu) ecu1453 19173302
Homo sapiens (Hsa) hsa26856 ENSP00000229715
Kluyveromyces lactis (Kla) kla4499 KLLA0F09207g
Mus musculus (Mmu) mmu11521 ENSMUSP00000007266
(MGI:90676)		 O35901
Mus musculus (Mmu) mmu11520 ENSMUSP00000058307
Neurospora crassa (Ncr) ncr7186 NCU07382.2
Oryza sativa (Osa) osa68173 7013.m00107
Plasmodium falciparum (Pfa) pfa3653 PFE1020w
Saccharomyces cerevisiae (Sce) sce151 YBL026W
(S000000122)
Schizosaccharomyces pombe (Spo) spo1532 SPCC1620.01c O94408
Yarrowia lipolytica (Yli) yli5698 YALI0F08459g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000122
GO:0005634 nucleus C
IC
DmeFBgn0036277
IDA
SpoSPCC1620.01c
ISS
AthAt1g03330
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0036277
NAS
SpoSPCC1620.01c
GO:0005688 U6 snRNP C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
NAS
DmeFBgn0036277
TAS
SceS000000122
GO:0005730 nucleolus C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000122
ISS
AthAt1g03330
SpoSPCC1620.01c
GO:0005737 cytoplasm C
ISO
MmuMGI:90676
GO:0005829 cytosol C
IDA
SpoSPCC1620.01c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0036277
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000122
ISO
MmuMGI:90676
ISS
SpoSPCC1620.01c
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036277
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0036277
GO:0003674 molecular_function F
ND
AthAt1g03330
GO:0003723 RNA binding F
IDA
SceS000000122
IPI
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005515 protein binding F
IPI
MmuMGI:90676
GO:0019901 protein kinase binding F
IDA
MmuMGI:90676
GO:0000003 reproduction P
IMP
CelWBGene00001808
GO:0000244 assembly of spliceosomal tri-snRNP P
ISO
MmuMGI:90676
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0036277
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036277
IPI
SceS000000122
ISS
DmeFBgn0036277
SpoSPCC1620.01c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000122
GO:0006364 rRNA processing P
ISS
SpoSPCC1620.01c
GO:0006402 mRNA catabolic process P
ISO
MmuMGI:90676
ISS
SpoSPCC1620.01c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00001808
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00001808
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000000122
GO:0040007 growth P
IMP
CelWBGene00001808
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00001808
GO:0040011 locomotion P
IMP
CelWBGene00001808
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00001808

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1620.01c
(O94408)		 YBL026W
(S000000122)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000122
GO:0005634 nucleus C
IDA
SpoSPCC1620.01c
GO:0005681 spliceosomal complex C
NAS
SpoSPCC1620.01c
GO:0005688 U6 snRNP C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
TAS
SceS000000122
GO:0005730 nucleolus C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IPI
SceS000000122
ISS
SpoSPCC1620.01c
GO:0005829 cytosol C
IDA
SpoSPCC1620.01c
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000000122
ISS
SpoSPCC1620.01c
GO:0003723 RNA binding F
IDA
SceS000000122
IPI
SceS000000122
ISS
SpoSPCC1620.01c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000000122
ISS
SpoSPCC1620.01c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
TAS
SceS000000122
GO:0006364 rRNA processing P
ISS
SpoSPCC1620.01c
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1620.01c
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000000122

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Include wild-cards:   

Search for GO info:  

GO info in one table:

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