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Search term: YBL103C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RTG3
SGD link S000000199
Alternative ID YBL103C
Description Basic helix-loop-helix-leucine zipper (bHLH/Zip) transcription factor that forms a complex with another bHLH/Zip protein, Rtg1p, to activate the retrograde (RTG) and TOR pathways
Synonyms YBL103C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1318 -CDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Helix loop helix transcription factor EB

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE14416
(WBGene00020930)
GI:17542746 P91527
Caenorhabditis elegans (Cel) CE28499 GI:17542748 P91527
Drosophila melanogaster (Dme) 7290500 GI:18858233
Homo sapiens (Hsa) Hs6005934
(USF1)
GI:6005934 P22415
Homo sapiens (Hsa) Hs4507847
(USF2)
GI:4507847 Q15853
Homo sapiens (Hsa) Hs6912702
(TFEC)
GI:6912702 Q75KY0
Homo sapiens (Hsa) Hs8659574
(TFE3)
GI:8659574 P19532
Homo sapiens (Hsa) Hs18580565 GI:18580565
Homo sapiens (Hsa) Hs22060220 GI:19856774 P19484
Homo sapiens (Hsa) Hs4557755 GI:4557755 O75030
Saccharomyces cerevisiae (Sce) YBL103c
(S000000199)
GI:6319365 P38165
Saccharomyces cerevisiae (Sce) YJR060w
(S000003821)
GI:6322520 P17106
Schizosaccharomyces pombe (Spo) SPAC3F10.12c GI:19114856 Q10186


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000978
ISS
SpoSPAC3F10.12c
GO:0000776 kinetochore C
TAS
SceS000003821
GO:0005634 nucleus C
IDA
HsaUSF1
USF2
SceS000000199
S000003821
SpoSPAC3F10.12c
ISS
SpoSPAC3F10.12c
GO:0005667 transcription factor complex C
IDA
HsaUSF1
GO:0005737 cytoplasm C
IDA
SceS000000199
GO:0005739 mitochondrion C
IDA
SceS000003821
GO:0003677 DNA binding F
IDA
SceS000003821
ISS
SpoSPAC3F10.12c
GO:0003700 transcription factor activity F
IMP
SceS000003821
ISS
HsaTFE3
RCA
SceS000000199
TAS
HsaTFEC
GO:0003702 RNA polymerase II transcription factor
activity
F
RCA
SceS000003821
GO:0003704 specific RNA polymerase II transcription factor
activity
F
IDA
SceS000000199
NAS
SpoSPAC3F10.12c
RCA
SceS000003821
GO:0003705 RNA polymerase II transcription factor activity,
enhancer binding
F
IDA
HsaUSF1
IMP
HsaUSF1
USF2
GO:0003713 transcription coactivator activity F
TAS
HsaTFEC
GO:0003714 transcription corepressor activity F
TAS
HsaTFEC
GO:0005515 protein binding F
IPI
HsaTFE3
USF2
USF1
GO:0010843 promoter binding F
ISS
HsaTFE3
GO:0019237 centromeric DNA binding F
IDA
SceS000003821
GO:0019899 enzyme binding F
IPI
HsaUSF1
GO:0019901 protein kinase binding F
IPI
HsaUSF1
GO:0042802 identical protein binding F
IPI
HsaUSF2
GO:0042803 protein homodimerization activity F
IPI
HsaUSF2
USF1
TAS
HsaUSF1
GO:0042826 histone deacetylase binding F
IPI
HsaUSF1
GO:0043425 bHLH transcription factor binding F
IPI
HsaUSF2
USF1
GO:0043565 sequence-specific DNA binding F
IDA
HsaUSF2
USF1
SceS000003821
S000000199
GO:0046982 protein heterodimerization activity F
IPI
HsaUSF2
USF1
GO:0000003 reproduction P
IMP
CelWBGene00020930
GO:0000430 regulation of transcription from RNA polymerase II
promoter by glucose
P
IC
HsaUSF2
USF1
GO:0000432 positive regulation of transcription from RNA
polymerase II promoter by glucose
P
IMP
HsaUSF2
USF1
ISS
HsaUSF2
USF1
GO:0001666 response to hypoxia P
IMP
HsaUSF1
GO:0006333 chromatin assembly or disassembly P
IDA
SceS000003821
GO:0006366 transcription from RNA polymerase II
promoter
P
IDA
HsaUSF1
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
IDA
SceS000000199
GO:0006959 humoral immune response P
ISS
HsaTFE3
GO:0007059 chromosome segregation P
IMP
SceS000003821
GO:0009086 methionine biosynthetic process P
IMP
SceS000003821
GO:0009411 response to UV P
ISS
HsaUSF1
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter
P
TAS
HsaUSF1
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter
P
IMP
HsaUSF1
USF2
ISS
HsaTFE3
GO:0016481 negative regulation of transcription P
IMP
SceS000003821
GO:0019086 late viral mRNA transcription P
IC
HsaUSF2
IDA
HsaUSF1
GO:0019915 lipid storage P
IMP
CelWBGene00020930
GO:0031930 mitochondria-nucleus signaling
pathway
P
IDA
SceS000000199
GO:0032569 gene-specific transcription from RNA polymerase II
promoter
P
ISS
SpoSPAC3F10.12c
GO:0032869 cellular response to insulin stimulus P
IDA
HsaUSF1
GO:0042593 glucose homeostasis P
TAS
HsaUSF1
GO:0043193 positive regulation of gene-specific
transcription
P
IMP
SceS000003821
GO:0045990 regulation of transcription by carbon
catabolites
P
TAS
HsaUSF1
GO:0051918 negative regulation of fibrinolysis P
IC
HsaUSF1
GO:0055088 lipid homeostasis P
ISS
HsaUSF1
USF2

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48529

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RTG3
(S000000199)
GI:6319365 P38165
Kluyveromyces lactis (Kla) KLLA0E06479g GI:50308479


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000199
GO:0005737 cytoplasm C
IDA
SceS000000199
GO:0003700 transcription factor activity F
RCA
SceS000000199
GO:0003704 specific RNA polymerase II transcription factor
activity
F
IDA
SceS000000199
GO:0043565 sequence-specific DNA binding F
IDA
SceS000000199
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
IDA
SceS000000199
GO:0031930 mitochondria-nucleus signaling
pathway
P
IDA
SceS000000199

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_34639

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Mus musculus (Mmu) mmu28596 ENSMUSP00000076758
Rattus norvegicus (Rno) rno30978 ENSRNOP00000034267
(RGD:1559642)
Saccharomyces cerevisiae (Sce) sce239 YBL103C
(S000000199)