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Search term: YBR002C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RER2
SGD link S000000206
Alternative ID YBR002C
Description Cis-prenyltransferase involved in dolichol synthesis; participates in endoplasmic reticulum (ER) protein sorting
Synonyms YBR002C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1602 ACDHYPE

KOGs classification KOGs description
METABOLISM Cis-prenyltransferase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g17570 GI:15227864
Arabidopsis thaliana (Ath) At2g23400 GI:15227828
Arabidopsis thaliana (Ath) At2g23410 GI:7447521
Arabidopsis thaliana (Ath) At5g58770 GI:15237748
Arabidopsis thaliana (Ath) At5g58780 GI:15237750
Arabidopsis thaliana (Ath) At5g60500 GI:15239357
Arabidopsis thaliana (Ath) At5g60510 GI:15239358
Caenorhabditis elegans (Cel) CE12968_1 GI:17542134
Drosophila melanogaster (Dme) 7290854 GI:7290854
Homo sapiens (Hsa) Hs13376337 GI:13376337
Saccharomyces cerevisiae (Sce) YBR002c
(S000000206)		 GI:6319474 P35196
Saccharomyces cerevisiae (Sce) YMR101c
(S000004707)		 GI:6323748 Q03175
Schizosaccharomyces pombe (Spo) SPAC4D7.04c GI:19115869 O14171
Encephalitozoon cuniculi (Ecu) ECU09g1870 GI:19173309


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
IDA
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0005811 lipid particle C
IDA
SceS000004707
GO:0009507 chloroplast C
IDA
AthAt5g58770
GO:0004659 prenyltransferase activity F
IDA
SceS000004707
S000000206
ISS
SpoSPAC4D7.04c
GO:0045547 dehydrodolichyl diphosphate synthase
activity		 F
IDA
SceS000000206
S000004707
IGI
AthAt5g58770
At5g58780
At2g23400
At2g23410
ISS
SceS000004707
GO:0006486 protein amino acid glycosylation P
IDA
SceS000004707
S000000206
IMP
SceS000000206
S000004707
ISS
SpoSPAC4D7.04c
GO:0006487 protein amino acid N-linked glycosylation P
NAS
SpoSPAC4D7.04c
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000000206
GO:0019408 dolichol biosynthetic process P
IDA
SceS000000206
IGI
AthAt5g58780
At2g23400
At5g58770
At2g23410
ISS
SpoSPAC4D7.04c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
32615

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DHDDS GI:45580742
Pan troglodytes (Ptr) DHDDS GI:114554899
Canis familiaris (Cfa) DHDDS GI:73950553
Mus musculus (Mmu) Dhdds
(MGI:1914672)		 GI:27754093 Q99KU1
Rattus norvegicus (Rno) Dhdds
(RGD:1311560)		 GI:58865532
Gallus gallus (Gga) DHDDS GI:118101494
Drosophila melanogaster (Dme) CG10778
(FBgn0029980)		 GI:18857969
Anopheles gambiae (Aga) AgaP_AGAP002026 GI:158301316
Anopheles gambiae (Aga) AgaP_AGAP012908 GI:58375626
Caenorhabditis elegans (Cel) T01G1.4
(CE37928;
WBGene00044025)		 GI:71993029
Schizosaccharomyces pombe (Spo) SPAC4D7.04c GI:19115869 O14171
Saccharomyces cerevisiae (Sce) RER2
(S000000206)		 GI:6319474 P35196
Kluyveromyces lactis (Kla) KLLA0E17259g GI:50309435
Eremothecium gossypii (Ego) AGOS_AER003C GI:45190609
Magnaporthe grisea (Mgr) MGG_12110 GI:145607055
Neurospora crassa (Ncr) NCU03460.1 GI:32404210
Arabidopsis thaliana (Ath) AT2G17570 GI:18398467
Oryza sativa (Osa) Os07g0607700 GI:115473277
Oryza sativa (Osa) Os06g0167400 GI:115466642
Plasmodium falciparum (Pfa) MAL8P1.22 GI:124512256


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914672
GO:0005783 endoplasmic reticulum C
IDA
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0003674 molecular_function F
ND
MmuMGI:1914672
GO:0004659 prenyltransferase activity F
IDA
SceS000000206
ISS
PfaMAL8P1.22
SpoSPAC4D7.04c
GO:0005515 protein binding F
IPI
HsaDHDDS
GO:0045547 dehydrodolichyl diphosphate synthase
activity		 F
IDA
SceS000000206
GO:0006486 protein amino acid glycosylation P
IDA
SceS000000206
IMP
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0006487 protein amino acid N-linked glycosylation P
NAS
SpoSPAC4D7.04c
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000000206
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0029980
GO:0008150 biological_process P
ND
MmuMGI:1914672
GO:0019408 dolichol biosynthetic process P
IDA
SceS000000206
ISS
PfaMAL8P1.22
SpoSPAC4D7.04c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_330

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12929 ENSANGP00000023121
Anopheles gambiae (Aga) aga4133 ENSANGP00000024653
Ashbya gossypii (Ago) ago570 ABL022W
Ashbya gossypii (Ago) ago2508 AER003C
Arabidopsis thaliana (Ath) ath8602 At2g17570.1
Arabidopsis thaliana (Ath) ath9250 At2g23400.1
Arabidopsis thaliana (Ath) ath9251 At2g23410.1
Arabidopsis thaliana (Ath) ath27933 At5g58770.1
Arabidopsis thaliana (Ath) ath27934 At5g58780.1
Arabidopsis thaliana (Ath) ath27935 At5g58782.1
Arabidopsis thaliana (Ath) ath27936 At5g58784.1
Arabidopsis thaliana (Ath) ath28131 At5g60500.1
Arabidopsis thaliana (Ath) ath28132 At5g60510.1
Caenorhabditis elegans (Cel) cel14239 T01G1.4
(CE37928;
WBGene00044025)
Candida glabrata (Cgl) cgl602 CAGL0C04279g
Candida glabrata (Cgl) cgl3665 CAGL0K03355g
Cryptococcus neoformans (Cne) cne567 163.m06427
Dictyostelium discoideum (Ddi) ddi11300 DDB0183890
Debaryomyces hansenii (Dha) dha2974 DEHA0D15070g
Debaryomyces hansenii (Dha) dha6172 DEHA0G10670g
Drosophila melanogaster (Dme) dme16904 CG10778-PA
(FBgn0029980)
Danio rerio (Dre) dre6733 ENSDARP00000048918
Escherichia coli (Eco) eco175 16128167
Encephalitozoon cuniculi (Ecu) ecu1460 19173309
Takifugu rubripes (Fru) fru18546 SINFRUP00000129778
Takifugu rubripes (Fru) fru18545 SINFRUP00000171377
Gallus gallus (Gga) gga12737 ENSGALP00000000524
(DHDDS)
Gallus gallus (Gga) gga12738 ENSGALP00000000525
Homo sapiens (Hsa) hsa621 ENSP00000236342
(DHDDS)		 Q86SQ9-3
Homo sapiens (Hsa) hsa619 ENSP00000349557
(DHDDS)		 Q86SQ9-1
Homo sapiens (Hsa) hsa620 ENSP00000353104
(DHDDS)		 Q86SQ9-2
Kluyveromyces lactis (Kla) kla1101 KLLA0B12848g
Kluyveromyces lactis (Kla) kla3724 KLLA0E17259g
Mus musculus (Mmu) mmu19064 ENSMUSP00000012262
(MGI:1914672)		 Q99KU1-1
Neurospora crassa (Ncr) ncr3355 NCU03460.2
Oryza sativa (Osa) osa12333 2822.m00124
Oryza sativa (Osa) osa15085 3025.m00145
Oryza sativa (Osa) osa34768 4711.m00140
Oryza sativa (Osa) osa46902 5539.m00106
Plasmodium falciparum (Pfa) pfa2006 MAL8P1.22
Rattus norvegicus (Rno) rno24095 ENSRNOP00000020051
(RGD:1311560)		 Q5U2T2
Saccharomyces cerevisiae (Sce) sce253 YBR002C
(S000000206)
Saccharomyces cerevisiae (Sce) sce4855 YMR101C
(S000004707)
Schizosaccharomyces pombe (Spo) spo1650 SPAC4D7.04c O14171
Yarrowia lipolytica (Yli) yli2471 YALI0C18799g
Yarrowia lipolytica (Yli) yli3433 YALI0D17556g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914672
GO:0005783 endoplasmic reticulum C
IDA
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0005811 lipid particle C
IDA
SceS000004707
GO:0009507 chloroplast C
IDA
AthAt5g58770
GO:0003674 molecular_function F
ND
MmuMGI:1914672
GO:0004659 prenyltransferase activity F
IDA
SceS000004707
S000000206
ISS
PfaMAL8P1.22
SpoSPAC4D7.04c
GO:0045547 dehydrodolichyl diphosphate synthase
activity		 F
IDA
SceS000000206
S000004707
IGI
AthAt5g58770
At5g58780
At2g23400
At5g58782
At2g23410
At5g58784
ISS
SceS000004707
GO:0006486 protein amino acid glycosylation P
IDA
SceS000004707
S000000206
IMP
SceS000000206
S000004707
ISS
SpoSPAC4D7.04c
GO:0006487 protein amino acid N-linked glycosylation P
NAS
SpoSPAC4D7.04c
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000000206
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0029980
GO:0008150 biological_process P
ND
MmuMGI:1914672
GO:0019408 dolichol biosynthetic process P
IDA
SceS000000206
IGI
AthAt5g58780
At2g23400
At5g58770
At2g23410
At5g58782
At5g58784
ISS
PfaMAL8P1.22
SpoSPAC4D7.04c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4D7.04c
(O14171)		 YBR002C
(S000000206)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005783 endoplasmic reticulum C
IDA
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0004659 prenyltransferase activity F
IDA
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0045547 dehydrodolichyl diphosphate synthase
activity		 F
IDA
SceS000000206
GO:0006486 protein amino acid glycosylation P
IDA
SceS000000206
IMP
SceS000000206
ISS
SpoSPAC4D7.04c
GO:0006487 protein amino acid N-linked glycosylation P
NAS
SpoSPAC4D7.04c
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000000206
GO:0019408 dolichol biosynthetic process P
IDA
SceS000000206
ISS
SpoSPAC4D7.04c

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GO info in one table:

s.khadayate@ucl.ac.uk