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Search term: YBR030W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RKM3
SGD link S000000234
Alternative ID YBR030W
Description Ribosomal lysine methyltransferase specific for monomethylation of Rpl42ap and Rpl42bp (lysine 40); nuclear SET domain containing protein
Synonyms YBR030W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1337 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED N-methyltransferase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g01920 GI:15223505
Arabidopsis thaliana (Ath) At1g14030 GI:15223054
Arabidopsis thaliana (Ath) At1g24610 GI:15221780
Arabidopsis thaliana (Ath) At3g07670 GI:15231493
Arabidopsis thaliana (Ath) At3g56570 GI:15228958
Arabidopsis thaliana (Ath) At5g14260 GI:15241353
Arabidopsis thaliana (Ath) At5g17240 GI:15237935
Caenorhabditis elegans (Cel) CE26269 GI:17556426
Drosophila melanogaster (Dme) 7290775 GI:7290775
Drosophila melanogaster (Dme) 7290777 GI:7290777
Drosophila melanogaster (Dme) 7292112 GI:7292112
Homo sapiens (Hsa) Hs8393013
(SETD4)
GI:8393013 Q9NVD3
Homo sapiens (Hsa) Hs14149938 GI:14149938
Saccharomyces cerevisiae (Sce) YBR030w
(S000000234)
GI:6319504 P38222
Saccharomyces cerevisiae (Sce) YDR198c
(S000002606)
GI:6320404 Q03942
Saccharomyces cerevisiae (Sce) YHL039w GI:6321748 P38732
Saccharomyces cerevisiae (Sce) YPL208w
(S000006129)
GI:6325048 Q08961
Schizosaccharomyces pombe (Spo) SPAC3C7.09 GI:19114522 O14135
Schizosaccharomyces pombe (Spo) SPBC1709.13c GI:19112238 O74738
Schizosaccharomyces pombe (Spo) SPCC1223.04c GI:19075849 O74405


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g56570
At1g01920
SceS000002606
GO:0005634 nucleus C
IDA
SceS000006129
S000000234
SpoSPAC3C7.09
SPBC1709.13c
SPCC1223.04c
GO:0005730 nucleolus C
IDA
SpoSPCC1223.04c
GO:0005737 cytoplasm C
IDA
SceS000006129
GO:0005829 cytosol C
IDA
SpoSPAC3C7.09
SPBC1709.13c
SPCC1223.04c
GO:0009507 chloroplast C
IDA
AthAt1g24610
At5g14260
At1g14030
GO:0009570 chloroplast stroma C
IDA
AthAt1g14030
GO:0003674 molecular_function F
ND
AthAt1g24610
At5g14260
At5g17240
At3g56570
At1g01920
GO:0016279 protein-lysine N-methyltransferase
activity
F
IDA
SceS000006129
S000002606
SpoSPCC1223.04c
IGI
SceS000000234
IMP
SceS000006129
S000000234
SpoSPBC1709.13c
ISS
SpoSPAC3C7.09
GO:0030785 [ribulose-bisphosphate carboxylase]-lysine
N-methyltransferase activity
F
ISS
AthAt1g14030
GO:0006479 protein amino acid methylation P
IDA
SpoSPCC1223.04c
IMP
SpoSPBC1709.13c
ISS
SpoSPAC3C7.09
GO:0008150 biological_process P
ND
AthAt1g24610
At3g56570
At5g17240
At5g14260
At3g07670
At1g01920
GO:0018022 peptidyl-lysine methylation P
IDA
SpoSPCC1223.04c
ISS
SpoSPAC3C7.09
GO:0018023 peptidyl-lysine trimethylation P
IMP
SceS000002606
GO:0018026 peptidyl-lysine monomethylation P
IDA
SceS000002606
IGI
SceS000000234
IMP
SceS000000234
GO:0018027 peptidyl-lysine dimethylation P
IDA
SceS000006129
IMP
SceS000006129
ISS
SpoSPBC1709.13c
GO:0042254 ribosome biogenesis P
NAS
SpoSPBC1709.13c
TAS
SpoSPCC1223.04c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117729

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) YBR030W
(S000000234)
GI:6319504 P38222
Kluyveromyces lactis (Kla) KLLA0B07161g GI:50303805


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000234
GO:0016279 protein-lysine N-methyltransferase
activity
F
IGI
SceS000000234
IMP
SceS000000234
GO:0018026 peptidyl-lysine monomethylation P
IGI
SceS000000234
IMP
SceS000000234

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3209

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago381 AAR193C
Ashbya gossypii (Ago) ago2281 AEL225C
Arabidopsis thaliana (Ath) ath17048 At3g56570.1
Candida glabrata (Cgl) cgl390 CAGL0B04279g
Candida glabrata (Cgl) cgl5040 CAGL0M08844g
Cryptococcus neoformans (Cne) cne4821 186.m03697
Dictyostelium discoideum (Ddi) ddi1605 DDB0167139
Debaryomyces hansenii (Dha) dha739 DEHA0B01342g
Debaryomyces hansenii (Dha) dha3845 DEHA0E13662g
Danio rerio (Dre) dre29993 ENSDARP00000017780
Gallus gallus (Gga) gga4452 ENSGALP00000003511
Gallus gallus (Gga) gga4453 ENSGALP00000003512
(SETD6)
Q5ZK17
Homo sapiens (Hsa) hsa12280 ENSP00000219315
(SETD6)
Q8TBK2-1
Homo sapiens (Hsa) hsa12281 ENSP00000310082
(SETD6)
Q8TBK2-2
Kluyveromyces lactis (Kla) kla311 KLLA0A07084g
Kluyveromyces lactis (Kla) kla847 KLLA0B07161g
Mus musculus (Mmu) mmu26496 ENSMUSP00000034096
(MGI:1913333)
Q9CWY3
Neurospora crassa (Ncr) ncr9571 NCU09827.2
Oryza sativa (Osa) osa47530 5644.m00207
Oryza sativa (Osa) osa47963 5798.m00146
Rattus norvegicus (Rno) rno14538 ENSRNOP00000016626
(RGD:1560538)
Saccharomyces cerevisiae (Sce) sce283 YBR030W
(S000000234)
Saccharomyces cerevisiae (Sce) sce1306 YDR257C
(S000002665)
Schizosaccharomyces pombe (Spo) spo1249 SPAC688.14 Q9P6L2
Schizosaccharomyces pombe (Spo) spo1142 SPBC16C6.01c O42925
Yarrowia lipolytica (Yli) yli1092 YALI0B08624g
Yarrowia lipolytica (Yli) yli6516 YALI0F28061g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g56570
MmuMGI:1913333
GO:0005634 nucleus C
IDA
SceS000000234
S000002665
SpoSPAC688.14
SPBC16C6.01c
GO:0005829 cytosol C
IDA
SpoSPBC16C6.01c
GO:0003674 molecular_function F
ND
AthAt3g56570
MmuMGI:1913333
GO:0016279 protein-lysine N-methyltransferase
activity
F
IDA
SpoSPAC688.14
IGI
SceS000000234
S000002665
IMP
SceS000002665
S000000234
ISS
SpoSPBC16C6.01c
GO:0006479 protein amino acid methylation P
IDA
SpoSPAC688.14
ISS
SpoSPBC16C6.01c
GO:0008150 biological_process P
ND
AthAt3g56570
MmuMGI:1913333
GO:0018022 peptidyl-lysine methylation P
IDA
SpoSPAC688.14
ISS
SpoSPBC16C6.01c
GO:0018026 peptidyl-lysine monomethylation P
IGI
SceS000000234
S000002665
IMP
SceS000000234
S000002665
GO:0043555 regulation of translation in response to
stress
P
IMP
SpoSPAC688.14

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