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Search term: YBR049C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name REB1
SGD link S000000253
Alternative ID YBR049C
Description RNA polymerase I enhancer binding protein; DNA binding protein which binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription
Synonyms YBR049C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0051 A--HYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase I termination factor, Myb superfamily

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g41020 GI:15237544
Homo sapiens (Hsa) Hs10863947 GI:10863947
Homo sapiens (Hsa) Hs6678455 GI:6678455
Saccharomyces cerevisiae (Sce) YBR049c
(S000000253)		 GI:6319523 P21538
Saccharomyces cerevisiae (Sce) YDR026c GI:6320229 Q12457
Schizosaccharomyces pombe (Spo) SPAC22F8.07c GI:19115642 Q9UUI6
Schizosaccharomyces pombe (Spo) SPAC31G5.10 GI:19114922 O14108
Schizosaccharomyces pombe (Spo) SPBC1198.11c GI:19111872 Q9P6H9
Arabidopsis thaliana (Ath) At5g41020 GI:15237544
Homo sapiens (Hsa) Hs10863947 GI:10863947
Homo sapiens (Hsa) Hs6678455 GI:6678455
Saccharomyces cerevisiae (Sce) YBR049c
(S000000253)		 GI:6319523 P21538
Saccharomyces cerevisiae (Sce) YDR026c GI:6320229 Q12457
Schizosaccharomyces pombe (Spo) SPAC22F8.07c GI:19115642 Q9UUI6
Schizosaccharomyces pombe (Spo) SPAC31G5.10 GI:19114922 O14108
Schizosaccharomyces pombe (Spo) SPBC1198.11c GI:19111872 Q9P6H9
Arabidopsis thaliana (Ath) At5g41020 GI:15237544
Homo sapiens (Hsa) Hs10863947 GI:10863947
Homo sapiens (Hsa) Hs6678455 GI:6678455
Saccharomyces cerevisiae (Sce) YBR049c
(S000000253)		 GI:6319523 P21538
Saccharomyces cerevisiae (Sce) YDR026c GI:6320229 Q12457
Schizosaccharomyces pombe (Spo) SPAC22F8.07c GI:19115642 Q9UUI6
Schizosaccharomyces pombe (Spo) SPAC31G5.10 GI:19114922 O14108
Schizosaccharomyces pombe (Spo) SPBC1198.11c GI:19111872 Q9P6H9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceYDR026c
SpoSPAC22F8.07c
IDA
SpoSPAC22F8.07c
SPAC31G5.10
ISS
SpoSPBC1198.11c
TAS
SceS000000253
GO:0005730 nucleolus C
IDA
SceYDR026c
SpoSPAC31G5.10
NAS
SpoSPBC1198.11c
GO:0005840 ribosome C
IDA
SceYDR026c
GO:0003677 DNA binding F
IDA
SpoSPAC22F8.07c
IPI
SceYDR026c
ISS
AthAt5g41020
SpoSPAC31G5.10
GO:0003700 transcription factor activity F
ISS
AthAt5g41020
GO:0003702 RNA polymerase II transcription factor
activity		 F
IDA
SceS000000253
GO:0003716 RNA polymerase I transcription termination factor
activity		 F
TAS
SceS000000253
SpoSPBC1198.11c
GO:0042802 identical protein binding F
IPI
SpoSPAC22F8.07c
GO:0043110 rDNA spacer replication fork barrier
binding		 F
IDA
SpoSPAC22F8.07c
TAS
SpoSPBC1198.11c
GO:0043565 sequence-specific DNA binding F
IDA
SceS000000253
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
SceS000000253
GO:0006363 termination of RNA polymerase I
transcription		 P
IMP
SpoSPBC1198.11c
TAS
SceS000000253
GO:0008150 biological_process P
ND
SceYDR026c
SpoSPAC31G5.10
GO:0031582 replication fork arrest at rDNA
repeats		 P
IMP
SpoSPBC1198.11c
GO:0071171 site-specific DNA replication termination at RTS1
barrier		 P
IMP
SpoSPAC22F8.07c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38389

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) REB1
(S000000253)		 GI:6319523 P21538
Kluyveromyces lactis (Kla) REB1_KLULA GI:50310517
Eremothecium gossypii (Ego) AGOS_ABL092W GI:45185138


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
TAS
SceS000000253
GO:0003702 RNA polymerase II transcription factor
activity		 F
IDA
SceS000000253
GO:0003716 RNA polymerase I transcription termination factor
activity		 F
TAS
SceS000000253
GO:0043565 sequence-specific DNA binding F
IDA
SceS000000253
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
SceS000000253
GO:0006363 termination of RNA polymerase I
transcription		 P
TAS
SceS000000253

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3201

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago500 ABL092W
Candida glabrata (Cgl) cgl2498 CAGL0H09988g
Candida glabrata (Cgl) cgl4024 CAGL0K11770g
Cryptococcus neoformans (Cne) cne2666 183.m01841
Debaryomyces hansenii (Dha) dha3827 DEHA0E13266g
Danio rerio (Dre) dre18138 ENSDARP00000028305
(zgc:92448)		 Q6DG03
Danio rerio (Dre) dre18137 ENSDARP00000028551
(zgc:92448)		 Q5RGE9
Takifugu rubripes (Fru) fru9505 SINFRUP00000161750
Takifugu rubripes (Fru) fru9504 SINFRUP00000161751
Takifugu rubripes (Fru) fru9506 SINFRUP00000172124
Gallus gallus (Gga) gga25 ENSGALP00000010691
Gallus gallus (Gga) gga26 ENSGALP00000010692
(RCJMB04_9c4)		 Q5ZKU3
Gallus gallus (Gga) gga24 ENSGALP00000010693
Homo sapiens (Hsa) hsa28907 ENSP00000332171
(DMTF1)		 Q9Y222-1
Kluyveromyces lactis (Kla) kla4278 KLLA0F04389g
Mus musculus (Mmu) mmu19665 ENSMUSP00000061671
(MGI:1344415)		 Q8CE22-4
Neurospora crassa (Ncr) ncr2250 NCU02315.2
Rattus norvegicus (Rno) rno20711 ENSRNOP00000007948
(RGD:70966)		 Q66HG1-2
Rattus norvegicus (Rno) rno20710 ENSRNOP00000008095
Rattus norvegicus (Rno) rno20712 ENSRNOP00000008291
(RGD:70966)
Rattus norvegicus (Rno) rno20709 ENSRNOP00000046030
(RGD:70966)		 Q66HG1-1
Saccharomyces cerevisiae (Sce) sce302 YBR049C
(S000000253)
Schizosaccharomyces pombe (Spo) spo3479 SPAC22F8.07c Q9UUI6
Schizosaccharomyces pombe (Spo) spo3078 SPBC1198.11c Q9P6H9
Yarrowia lipolytica (Yli) yli6202 YALI0F20460g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SpoSPAC22F8.07c
IDA
SpoSPAC22F8.07c
ISS
SpoSPBC1198.11c
TAS
SceS000000253
GO:0005730 nucleolus C
NAS
SpoSPBC1198.11c
GO:0003677 DNA binding F
IDA
SpoSPAC22F8.07c
GO:0003702 RNA polymerase II transcription factor
activity		 F
IDA
SceS000000253
GO:0003716 RNA polymerase I transcription termination factor
activity		 F
TAS
SceS000000253
SpoSPBC1198.11c
GO:0042802 identical protein binding F
IPI
SpoSPAC22F8.07c
GO:0043110 rDNA spacer replication fork barrier
binding		 F
IDA
SpoSPAC22F8.07c
TAS
SpoSPBC1198.11c
GO:0043565 sequence-specific DNA binding F
IDA
SceS000000253
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
SceS000000253
GO:0006363 termination of RNA polymerase I
transcription		 P
IMP
SpoSPBC1198.11c
TAS
SceS000000253
GO:0031582 replication fork arrest at rDNA
repeats		 P
IMP
SpoSPBC1198.11c
GO:0071171 site-specific DNA replication termination at RTS1
barrier		 P
IMP
SpoSPAC22F8.07c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC22F8.07c
(Q9UUI6)		 YBR049C
(S000000253)
SPBC1198.11c
(Q9P6H9)		 YBR049C
(S000000253)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SpoSPAC22F8.07c
IDA
SpoSPAC22F8.07c
ISS
SpoSPBC1198.11c
TAS
SceS000000253
GO:0005730 nucleolus C
NAS
SpoSPBC1198.11c
GO:0003677 DNA binding F
IDA
SpoSPAC22F8.07c
GO:0003702 RNA polymerase II transcription factor
activity		 F
IDA
SceS000000253
GO:0003716 RNA polymerase I transcription termination factor
activity		 F
TAS
SceS000000253
SpoSPBC1198.11c
GO:0042802 identical protein binding F
IPI
SpoSPAC22F8.07c
GO:0043110 rDNA spacer replication fork barrier
binding		 F
IDA
SpoSPAC22F8.07c
TAS
SpoSPBC1198.11c
GO:0043565 sequence-specific DNA binding F
IDA
SceS000000253
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
SceS000000253
GO:0006363 termination of RNA polymerase I
transcription		 P
IMP
SpoSPBC1198.11c
TAS
SceS000000253
GO:0031582 replication fork arrest at rDNA
repeats		 P
IMP
SpoSPBC1198.11c
GO:0071171 site-specific DNA replication termination at RTS1
barrier		 P
IMP
SpoSPAC22F8.07c

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GO info in one table:

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