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Search term: YBR065C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ECM2
SGD link S000000269
Alternative ID YBR065C
Description Pre-mRNA splicing factor, facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p
Synonyms YBR065C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0153 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted RNA-binding protein (RRM superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g07360 GI:18390760
Arabidopsis thaliana (Ath) At2g29580 GI:15227567
Arabidopsis thaliana (Ath) At5g04210 GI:15237649
Arabidopsis thaliana (Ath) At5g07060 GI:15240684
Caenorhabditis elegans (Cel) CE06432_1 GI:17542324
Drosophila melanogaster (Dme) 7296892 GI:7296892
Homo sapiens (Hsa) Hs22047306 GI:22047306
Homo sapiens (Hsa) Hs22053839 GI:22053839
Homo sapiens (Hsa) Hs22059653_2 GI:22059653
Homo sapiens (Hsa) Hs8922328
(RBM22)		 GI:8922328 Q9NW64
Saccharomyces cerevisiae (Sce) YBR065c
(S000000269)		 GI:6319539 P38241
Schizosaccharomyces pombe (Spo) SPCC550.02c GI:19075594 O59800
Arabidopsis thaliana (Ath) At1g07360 GI:18390760
Arabidopsis thaliana (Ath) At2g29580 GI:15227567
Arabidopsis thaliana (Ath) At5g04210 GI:15237649
Arabidopsis thaliana (Ath) At5g07060 GI:15240684
Caenorhabditis elegans (Cel) CE06432_1 GI:17542324
Drosophila melanogaster (Dme) 7296892 GI:7296892
Homo sapiens (Hsa) Hs22047306 GI:22047306
Homo sapiens (Hsa) Hs22053839 GI:22053839
Homo sapiens (Hsa) Hs22059653_2 GI:22059653
Homo sapiens (Hsa) Hs8922328
(RBM22)		 GI:8922328 Q9NW64
Saccharomyces cerevisiae (Sce) YBR065c
(S000000269)		 GI:6319539 P38241
Schizosaccharomyces pombe (Spo) SPCC550.02c GI:19075594 O59800
Arabidopsis thaliana (Ath) At1g07360 GI:18390760
Arabidopsis thaliana (Ath) At2g29580 GI:15227567
Arabidopsis thaliana (Ath) At5g04210 GI:15237649
Arabidopsis thaliana (Ath) At5g07060 GI:15240684
Caenorhabditis elegans (Cel) CE06432_1 GI:17542324
Drosophila melanogaster (Dme) 7296892 GI:7296892
Homo sapiens (Hsa) Hs22047306 GI:22047306
Homo sapiens (Hsa) Hs22053839 GI:22053839
Homo sapiens (Hsa) Hs22059653_2 GI:22059653
Homo sapiens (Hsa) Hs8922328
(RBM22)		 GI:8922328 Q9NW64
Saccharomyces cerevisiae (Sce) YBR065c
(S000000269)		 GI:6319539 P38241
Schizosaccharomyces pombe (Spo) SPCC550.02c GI:19075594 O59800


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g07360
At5g04210
At5g07060
GO:0005634 nucleus C
IDA
HsaRBM22
SceS000000269
SpoSPCC550.02c
GO:0005681 spliceosomal complex C
IDA
SpoSPCC550.02c
RCA
SceS000000269
GO:0003674 molecular_function F
ND
SceS000000269
GO:0003676 nucleic acid binding F
ISS
AthAt5g07060
GO:0003723 RNA binding F
ISS
AthAt5g07060
At5g04210
At2g29580
At1g07360
GO:0005515 protein binding F
IPI
HsaRBM22
GO:0048306 calcium-dependent protein binding F
IPI
HsaRBM22
GO:0000060 protein import into nucleus, translocation P
IDA
HsaRBM22
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
SpoSPCC550.02c
IGI
SceS000000269
GO:0008150 biological_process P
ND
AthAt5g07060
At1g07360
At5g04210
GO:0016071 mRNA metabolic process P
RCA
SceS000000269
GO:0031505 fungal-type cell wall organization P
IMP
SceS000000269

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38397

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) ECM2
(S000000269)		 GI:6319539 P38241
Eremothecium gossypii (Ego) AGOS_AGR032W GI:45201127


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000269
GO:0005681 spliceosomal complex C
RCA
SceS000000269
GO:0003674 molecular_function F
ND
SceS000000269
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
SceS000000269
GO:0016071 mRNA metabolic process P
RCA
SceS000000269
GO:0031505 fungal-type cell wall organization P
IMP
SceS000000269

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2116

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7064 ENSANGP00000012203
Ashbya gossypii (Ago) ago4342 AGR032W
Arabidopsis thaliana (Ath) ath714 At1g07360.1
Arabidopsis thaliana (Ath) ath9927 At2g29580.1
Caenorhabditis elegans (Cel) cel15311 T11G6.8
(CE33830;
WBGene00011722)
Candida glabrata (Cgl) cgl4406 CAGL0L07458g
Cryptococcus neoformans (Cne) cne2395 181.m08431
Dictyostelium discoideum (Ddi) ddi9759 DDB0219572
Debaryomyces hansenii (Dha) dha4701 DEHA0F07150g
Drosophila melanogaster (Dme) dme10810 CG14641-PA
(FBgn0037220)
Danio rerio (Dre) dre13374 ENSDARP00000004055
(rbm22)		 Q6NZZ9
Danio rerio (Dre) dre13375 ENSDARP00000042788
Takifugu rubripes (Fru) fru29428 SINFRUP00000152503
Gallus gallus (Gga) gga5910 ENSGALP00000007237
(RBM22)		 Q5ZM16
Gallus gallus (Gga) gga5911 ENSGALP00000007238
Homo sapiens (Hsa) hsa26015 ENSP00000199814
(RBM22)		 Q9NW64-1
Kluyveromyces lactis (Kla) kla4909 KLLA0F18502g
Mus musculus (Mmu) mmu12766 ENSMUSP00000025506
(MGI:1914060)		 Q8BHS3
Neurospora crassa (Ncr) ncr2912 NCU03007.2
Oryza sativa (Osa) osa14559 3016.m00077
Oryza sativa (Osa) osa81755 8226.m00122
Plasmodium falciparum (Pfa) pfa5243 PFL2310w
Rattus norvegicus (Rno) rno14224 ENSRNOP00000026087
(RGD:1305770)		 Q4V7D7
Saccharomyces cerevisiae (Sce) sce320 YBR065C
(S000000269)
Schizosaccharomyces pombe (Spo) spo4865 SPCC550.02c O59800
Yarrowia lipolytica (Yli) yli5276 YALI0E33847g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g07360
MmuMGI:1914060
PfaPFL2310w
GO:0005634 nucleus C
IC
DmeFBgn0037220
IDA
SceS000000269
SpoSPCC550.02c
GO:0005681 spliceosomal complex C
IDA
SpoSPCC550.02c
RCA
SceS000000269
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0037220
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0037220
GO:0003674 molecular_function F
ND
MmuMGI:1914060
SceS000000269
GO:0003723 RNA binding F
ISS
AthAt2g29580
At1g07360
GO:0003729 mRNA binding F
ISS
DmeFBgn0037220
GO:0000003 reproduction P
IMP
CelWBGene00011722
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0037220
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0037220
SpoSPCC550.02c
IGI
SceS000000269
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00011722
GO:0002119 nematode larval development P
IMP
CelWBGene00011722
GO:0008150 biological_process P
ND
AthAt1g07360
MmuMGI:1914060
PfaPFL2310w
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011722
GO:0016071 mRNA metabolic process P
RCA
SceS000000269
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00011722
GO:0031505 fungal-type cell wall organization P
IMP
SceS000000269
GO:0040007 growth P
IMP
CelWBGene00011722
GO:0040011 locomotion P
IMP
CelWBGene00011722
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00011722

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC550.02c
(O59800)		 YBR065C
(S000000269)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000269
SpoSPCC550.02c
GO:0005681 spliceosomal complex C
IDA
SpoSPCC550.02c
RCA
SceS000000269
GO:0003674 molecular_function F
ND
SceS000000269
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
SpoSPCC550.02c
IGI
SceS000000269
GO:0016071 mRNA metabolic process P
RCA
SceS000000269
GO:0031505 fungal-type cell wall organization P
IMP
SceS000000269

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s.khadayate@ucl.ac.uk