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Search term: YBR073W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RDH54
SGD link S000000277
Alternative ID YBR073W
Description DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in recombinational repair of DNA double-strand breaks during mitosis and meiosis; proposed to be involved in crossover interference
Synonyms YBR073W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0390 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA repair protein, SNF2 family

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g05480 GI:15220523
Arabidopsis thaliana (Ath) At2g16390 GI:15227191
Arabidopsis thaliana (Ath) At2g21450 GI:15226547
Arabidopsis thaliana (Ath) At2g25020 GI:15224664
Arabidopsis thaliana (Ath) At3g19210 GI:15230318
Arabidopsis thaliana (Ath) At3g24340 GI:15230098
Arabidopsis thaliana (Ath) At3g31900 GI:15231969
Arabidopsis thaliana (Ath) At3g32280_2 GI:15232097
Arabidopsis thaliana (Ath) At3g42670 GI:15229135
Arabidopsis thaliana (Ath) At5g20420 GI:15241352
Caenorhabditis elegans (Cel) CE23323 GI:17544426
Caenorhabditis elegans (Cel) CE25143
(WBGene00004298)
GI:17508659 Q9XW40
Drosophila melanogaster (Dme) 7295868
(FBgn0002989)
GI:17136368 O76460
Drosophila melanogaster (Dme) 7300917 GI:7300917
Homo sapiens (Hsa) Hs4506397 GI:4506397
Homo sapiens (Hsa) Hs6912622_2
(RAD54B)
GI:6912622 Q9UF71
Saccharomyces cerevisiae (Sce) YBR073w
(S000000277)
GI:6319547
Saccharomyces cerevisiae (Sce) YGL163c
(S000003131)
GI:6321275 P32863
Schizosaccharomyces pombe (Spo) SPAC15A10.03c GI:19115202 P41410
Schizosaccharomyces pombe (Spo) SPAC22F3.03c GI:19113950 Q09772
Arabidopsis thaliana (Ath) At1g05480 GI:15220523
Arabidopsis thaliana (Ath) At2g16390 GI:15227191
Arabidopsis thaliana (Ath) At2g21450 GI:15226547
Arabidopsis thaliana (Ath) At2g25020 GI:15224664
Arabidopsis thaliana (Ath) At3g19210 GI:15230318
Arabidopsis thaliana (Ath) At3g24340 GI:15230098
Arabidopsis thaliana (Ath) At3g31900 GI:15231969
Arabidopsis thaliana (Ath) At3g32280_2 GI:15232097
Arabidopsis thaliana (Ath) At3g42670 GI:15229135
Arabidopsis thaliana (Ath) At5g20420 GI:15241352
Caenorhabditis elegans (Cel) CE23323 GI:17544426
Caenorhabditis elegans (Cel) CE25143
(WBGene00004298)
GI:17508659 Q9XW40
Drosophila melanogaster (Dme) 7295868
(FBgn0002989)
GI:17136368 O76460
Drosophila melanogaster (Dme) 7300917 GI:7300917
Homo sapiens (Hsa) Hs4506397 GI:4506397
Homo sapiens (Hsa) Hs6912622_2
(RAD54B)
GI:6912622 Q9UF71
Saccharomyces cerevisiae (Sce) YBR073w
(S000000277)
GI:6319547
Saccharomyces cerevisiae (Sce) YGL163c
(S000003131)
GI:6321275 P32863
Schizosaccharomyces pombe (Spo) SPAC15A10.03c GI:19115202 P41410
Schizosaccharomyces pombe (Spo) SPAC22F3.03c GI:19113950 Q09772
Arabidopsis thaliana (Ath) At1g05480 GI:15220523
Arabidopsis thaliana (Ath) At2g16390 GI:15227191
Arabidopsis thaliana (Ath) At2g21450 GI:15226547
Arabidopsis thaliana (Ath) At2g25020 GI:15224664
Arabidopsis thaliana (Ath) At3g19210 GI:15230318
Arabidopsis thaliana (Ath) At3g24340 GI:15230098
Arabidopsis thaliana (Ath) At3g31900 GI:15231969
Arabidopsis thaliana (Ath) At3g32280_2 GI:15232097
Arabidopsis thaliana (Ath) At3g42670 GI:15229135
Arabidopsis thaliana (Ath) At5g20420 GI:15241352
Caenorhabditis elegans (Cel) CE23323 GI:17544426
Caenorhabditis elegans (Cel) CE25143
(WBGene00004298)
GI:17508659 Q9XW40
Drosophila melanogaster (Dme) 7295868
(FBgn0002989)
GI:17136368 O76460
Drosophila melanogaster (Dme) 7300917 GI:7300917
Homo sapiens (Hsa) Hs4506397 GI:4506397
Homo sapiens (Hsa) Hs6912622_2
(RAD54B)
GI:6912622 Q9UF71
Saccharomyces cerevisiae (Sce) YBR073w
(S000000277)
GI:6319547
Saccharomyces cerevisiae (Sce) YGL163c
(S000003131)
GI:6321275 P32863
Schizosaccharomyces pombe (Spo) SPAC15A10.03c GI:19115202 P41410
Schizosaccharomyces pombe (Spo) SPAC22F3.03c GI:19113950 Q09772


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt2g16390
At3g19210
At3g31900
GO:0005634 nucleus C
IC
SceS000000277
SpoSPAC22F3.03c
IDA
SpoSPAC15A10.03c
SPAC22F3.03c
IMP
SceS000003131
ISS
SpoSPAC15A10.03c
GO:0005730 nucleolus C
IDA
AthAt3g42670
GO:0005819 spindle C
IDA
SpoSPAC15A10.03c
GO:0005829 cytosol C
IDA
SpoSPAC22F3.03c
GO:0003674 molecular_function F
ND
AthAt3g32280
At3g31900
GO:0003676 nucleic acid binding F
ISS
AthAt2g16390
GO:0003677 DNA binding F
ISS
AthAt2g16390
At5g20420
At3g19210
At3g42670
At3g24340
At2g21450
SpoSPAC15A10.03c
GO:0003678 DNA helicase activity F
TAS
HsaRAD54B
GO:0003724 RNA helicase activity F
TAS
HsaRAD54B
GO:0004003 ATP-dependent DNA helicase activity F
ISS
DmeFBgn0002989
SpoSPAC22F3.03c
GO:0004386 helicase activity F
ISS
AthAt3g19210
At2g21450
At2g16390
At3g24340
At3g42670
At5g20420
RCA
SceS000003131
GO:0005524 ATP binding F
IC
SpoSPAC15A10.03c
ISS
AthAt2g16390
At3g42670
At3g19210
At2g21450
At5g20420
At3g24340
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000277
S000003131
GO:0015616 DNA translocase activity F
IDA
SceS000003131
S000000277
ISS
SpoSPAC15A10.03c
GO:0033170 protein-DNA loading ATPase activity F
TAS
SpoSPAC15A10.03c
GO:0000003 reproduction P
IMP
CelWBGene00004298
GO:0000722 telomere maintenance via recombination P
IMP
SceS000003131
GO:0000724 double-strand break repair via homologous
recombination
P
IDA
SpoSPAC22F3.03c
IMP
AthAt3g19210
ISS
SpoSPAC15A10.03c
GO:0000727 double-strand break repair via break-induced
replication
P
TAS
SceS000000277
GO:0006200 ATP catabolic process P
ISS
SpoSPAC15A10.03c
SPAC22F3.03c
GO:0006281 DNA repair P
IMP
SpoSPAC15A10.03c
ISS
AthAt3g19210
NAS
DmeFBgn0002989
GO:0006302 double-strand break repair P
IMP
DmeFBgn0002989
TAS
DmeFBgn0002989
GO:0006306 DNA methylation P
IMP
AthAt2g16390
GO:0006310 DNA recombination P
ISS
DmeFBgn0002989
GO:0006311 meiotic gene conversion P
IMP
SpoSPAC15A10.03c
GO:0006312 mitotic recombination P
TAS
HsaRAD54B
GO:0006338 chromatin remodeling P
IDA
SceS000003131
ISS
SpoSPAC15A10.03c
GO:0006417 regulation of translation P
TAS
DmeFBgn0002989
GO:0006915 apoptosis P
IMP
CelWBGene00004298
GO:0007131 reciprocal meiotic recombination P
IDA
SpoSPAC22F3.03c
IGI
SceS000000277
IMP
SceS000000277
SpoSPAC15A10.03c
TAS
DmeFBgn0002989
HsaRAD54B
SpoSPAC15A10.03c
GO:0008150 biological_process P
ND
AthAt3g32280
At3g31900
GO:0008298 intracellular mRNA localization P
TAS
DmeFBgn0002989
GO:0010212 response to ionizing radiation P
IMP
DmeFBgn0002989
GO:0010332 response to gamma radiation P
IEP
AthAt3g19210
GO:0030261 chromosome condensation P
TAS
DmeFBgn0002989
GO:0030422 production of siRNA involved in RNA
interference
P
IGI
AthAt2g16390
GO:0030491 heteroduplex formation P
IDA
SceS000003131
S000000277
ISS
SpoSPAC15A10.03c
GO:0031047 gene silencing by RNA P
IMP
AthAt3g42670
GO:0032079 positive regulation of endodeoxyribonuclease
activity
P
IDA
SceS000003131
GO:0032392 DNA geometric change P
IDA
SceS000003131
S000000277
GO:0033554 cellular response to stress P
IMP
CelWBGene00004298
GO:0045003 double-strand break repair via synthesis-dependent
strand annealing
P
IMP
DmeFBgn0002989
TAS
SceS000003131
GO:0045144 meiotic sister chromatid segregation P
IMP
SceS000000277
GO:0046843 dorsal appendage formation P
IMP
DmeFBgn0002989
GO:0048477 oogenesis P
IMP
DmeFBgn0002989
TAS
DmeFBgn0002989
GO:0051321 meiotic cell cycle P
RCA
SceS000003131

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
8240

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RAD54B GI:6912622 Q9UF71
Pan troglodytes (Ptr) RAD54B GI:114620949
Canis familiaris (Cfa) RAD54B GI:73999360
Mus musculus (Mmu) E130016E03Rik GI:88319960
Rattus norvegicus (Rno) RGD1306507 GI:109474671
Gallus gallus (Gga) RAD54B GI:45382655
Anopheles gambiae (Aga) AgaP_AGAP006945 GI:158286564
Schizosaccharomyces pombe (Spo) rdh54
(SPAC22F3.03c)
GI:63054489 Q09772
Saccharomyces cerevisiae (Sce) RDH54
(S000000277)
GI:37362617
Kluyveromyces lactis (Kla) KLLA0F11814g GI:50311185
Eremothecium gossypii (Ego) AGOS_AGL212W GI:45200885


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000000277
SpoSPAC22F3.03c
IDA
SpoSPAC22F3.03c
GO:0005829 cytosol C
IDA
SpoSPAC22F3.03c
GO:0003678 DNA helicase activity F
TAS
HsaRAD54B
GO:0003724 RNA helicase activity F
TAS
HsaRAD54B
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPAC22F3.03c
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000277
GO:0015616 DNA translocase activity F
IDA
SceS000000277
GO:0000724 double-strand break repair via homologous
recombination
P
IDA
SpoSPAC22F3.03c
GO:0000727 double-strand break repair via break-induced
replication
P
TAS
SceS000000277
GO:0006200 ATP catabolic process P
ISS
SpoSPAC22F3.03c
GO:0006312 mitotic recombination P
TAS
HsaRAD54B
GO:0007131 reciprocal meiotic recombination P
IDA
SpoSPAC22F3.03c
IGI
SceS000000277
IMP
SceS000000277
TAS
HsaRAD54B
GO:0030491 heteroduplex formation P
IDA
SceS000000277
GO:0032392 DNA geometric change P
IDA
SceS000000277
GO:0045144 meiotic sister chromatid segregation P
IMP
SceS000000277

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_820

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga2402 ENSANGP00000007696
Anopheles gambiae (Aga) aga10783 ENSANGP00000026244
Ashbya gossypii (Ago) ago2208 AEL297W
Ashbya gossypii (Ago) ago4100 AGL212W
Arabidopsis thaliana (Ath) ath14198 At3g19210.1
Caenorhabditis elegans (Cel) cel17139 W06D4.6
(CE25143;
WBGene00004298)
Candida glabrata (Cgl) cgl2703 CAGL0I04224g
Candida glabrata (Cgl) cgl4740 CAGL0M01958g
Cryptococcus neoformans (Cne) cne853 163.m06197
Cryptococcus neoformans (Cne) cne5814 179.m00689
Dictyostelium discoideum (Ddi) ddi5483 DDB0185308
Dictyostelium discoideum (Ddi) ddi9169 DDB0186351
Debaryomyces hansenii (Dha) dha2574 DEHA0D06248g
Debaryomyces hansenii (Dha) dha4699 DEHA0F07106g
Drosophila melanogaster (Dme) dme512 CG3736-PA
(FBgn0002989)
Danio rerio (Dre) dre23033 ENSDARP00000007237
Danio rerio (Dre) dre7161 ENSDARP00000029529
Takifugu rubripes (Fru) fru21626 SINFRUP00000158835
Takifugu rubripes (Fru) fru6997 SINFRUP00000161058
Takifugu rubripes (Fru) fru6998 SINFRUP00000174468
Gallus gallus (Gga) gga22726 ENSGALP00000016844
(RAD54L)
O12944
Gallus gallus (Gga) gga11351 ENSGALP00000025665
(RAD54B)
Q9DG67
Homo sapiens (Hsa) hsa1087 ENSP00000262745
Homo sapiens (Hsa) hsa30529 ENSP00000336606
(RAD54B)
Q9Y620
Kluyveromyces lactis (Kla) kla131 KLLA0A03069g
Kluyveromyces lactis (Kla) kla4616 KLLA0F11814g
Mus musculus (Mmu) mmu17827 ENSMUSP00000039366
Mus musculus (Mmu) mmu17825 ENSMUSP00000066977
(MGI:3605986)
Q6PFE3
Mus musculus (Mmu) mmu18679 ENSMUSP00000067025
Mus musculus (Mmu) mmu18677 ENSMUSP00000071140
Mus musculus (Mmu) mmu18678 ENSMUSP00000072447
Neurospora crassa (Ncr) ncr9815 NCU10090.2
Oryza sativa (Osa) osa29613 4331.m00204
Plasmodium falciparum (Pfa) pfa1900 PF08_0126
Rattus norvegicus (Rno) rno23692 ENSRNOP00000018004
(RGD:1310600)
B5DFE8
Saccharomyces cerevisiae (Sce) sce329 YBR073W
(S000000277)
Saccharomyces cerevisiae (Sce) sce2258 YGL163C
(S000003131)
Schizosaccharomyces pombe (Spo) spo264 SPAC15A10.03c P41410
Schizosaccharomyces pombe (Spo) spo1845 SPAC22F3.03c Q09772
Yarrowia lipolytica (Yli) yli1042 YALI0B07513g
Yarrowia lipolytica (Yli) yli4874 YALI0E24431g