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Search term: YBR087W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RFC5
SGD link S000000291
Alternative ID YBR087W
Description Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon
Synonyms YBR087W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2035 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALINGINFORMATION STORAGE AND PROCESSING Replication factor C, subunit RFC3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g27740 GI:15241031
Caenorhabditis elegans (Cel) CE05396
(WBGene00004339)		 GI:17541990 Q18547
Drosophila melanogaster (Dme) 7297827 GI:7297827
Homo sapiens (Hsa) Hs4506489
(RFC3)		 GI:4506489 P40938
Homo sapiens (Hsa) Hs17440250 GI:17440250
Saccharomyces cerevisiae (Sce) YBR087w
(S000000291)		 GI:6319562 P38251
Schizosaccharomyces pombe (Spo) SPBC83.14c GI:19112438 O94697
Encephalitozoon cuniculi (Ecu) ECU10g0780i GI:19074687 Q8SR43


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC83.14c
GO:0005575 cellular_component C
ND
AthAt5g27740
GO:0005634 nucleus C
IDA
SpoSPBC83.14c
GO:0005654 nucleoplasm C
EXP
HsaRFC3
GO:0005663 DNA replication factor C complex C
IDA
HsaRFC3
SceS000000291
IMP
SceS000000291
ISS
SpoSPBC83.14c
TAS
HsaRFC3
GO:0005829 cytosol C
IDA
SpoSPBC83.14c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000000291
TAS
SpoSPBC83.14c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000000291
TAS
SpoSPBC83.14c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPBC83.14c
IPI
SceS000000291
GO:0043596 nuclear replication fork C
IC
SpoSPBC83.14c
GO:0003677 DNA binding F
IDA
HsaRFC3
GO:0003689 DNA clamp loader activity F
IDA
SceS000000291
ISS
SpoSPBC83.14c
TAS
HsaRFC3
GO:0005515 protein binding F
IPI
HsaRFC3
GO:0016887 ATPase activity F
IDA
HsaRFC3
GO:0000003 reproduction P
IMP
CelWBGene00004339
GO:0000731 DNA synthesis involved in DNA repair P
TAS
HsaRFC3
GO:0006200 ATP catabolic process P
ISS
SpoSPBC83.14c
GO:0006260 DNA replication P
EXP
HsaRFC3
IDA
HsaRFC3
GO:0006270 DNA-dependent DNA replication initiation P
ISS
SpoSPBC83.14c
GO:0006271 DNA strand elongation involved in DNA
replication		 P
TAS
HsaRFC3
GO:0006272 leading strand elongation P
IDA
SceS000000291
ISS
SpoSPBC83.14c
GO:0006281 DNA repair P
ISS
SpoSPBC83.14c
GO:0006297 nucleotide-excision repair, DNA gap
filling		 P
EXP
HsaRFC3
GO:0006298 mismatch repair P
TAS
SceS000000291
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00004339
GO:0007062 sister chromatid cohesion P
IMP
SceS000000291
IPI
SceS000000291
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004339
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt5g27740
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004339
GO:0040011 locomotion P
IMP
CelWBGene00004339
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004339
GO:0046683 response to organophosphorus P
IEP
HsaRFC3

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2188

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RFC3 GI:4506489 P40938
Pan troglodytes (Ptr) RFC3 GI:114649328
Canis familiaris (Cfa) RFC3 GI:73993384
Mus musculus (Mmu) Rfc3
(MGI:1916513)		 GI:124249204 Q3TKD1
Rattus norvegicus (Rno) Rfc3
(RGD:1306832)		 GI:57526873
Gallus gallus (Gga) RFC3 GI:57529302
Drosophila melanogaster (Dme) RfC38
(FBgn0028700)		 GI:19921136
Anopheles gambiae (Aga) AgaP_AGAP009047 GI:158299762
Caenorhabditis elegans (Cel) rfc-3
(CE05396;
WBGene00004339)		 GI:17541990 Q18547
Schizosaccharomyces pombe (Spo) rfc5
(SPBC83.14c)		 GI:19112438 O94697
Saccharomyces cerevisiae (Sce) RFC5
(S000000291)		 GI:6319562 P38251
Kluyveromyces lactis (Kla) KLLA0B12221g GI:50304249
Eremothecium gossypii (Ego) AGOS_ADL303C GI:45187570
Magnaporthe grisea (Mgr) MGG_03202 GI:39942244
Neurospora crassa (Ncr) NCU06769.1 GI:32413150
Arabidopsis thaliana (Ath) EMB2775 GI:15241031
Oryza sativa (Osa) Os03g0792600 GI:115455849
Plasmodium falciparum (Pfa) PF11_0117 GI:124803688


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC83.14c
GO:0005575 cellular_component C
ND
AthEMB2775
GO:0005634 nucleus C
IDA
SpoSPBC83.14c
GO:0005654 nucleoplasm C
EXP
HsaRFC3
GO:0005663 DNA replication factor C complex C
IDA
HsaRFC3
SceS000000291
IMP
SceS000000291
ISS
DmeFBgn0028700
PfaPF11_0117
SpoSPBC83.14c
TAS
HsaRFC3
GO:0005829 cytosol C
IDA
SpoSPBC83.14c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0028700
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000000291
TAS
SpoSPBC83.14c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000000291
TAS
SpoSPBC83.14c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPBC83.14c
IPI
SceS000000291
GO:0043596 nuclear replication fork C
IC
SpoSPBC83.14c
GO:0003677 DNA binding F
IDA
HsaRFC3
GO:0003689 DNA clamp loader activity F
IDA
SceS000000291
ISS
DmeFBgn0028700
SpoSPBC83.14c
TAS
HsaRFC3
GO:0005515 protein binding F
IPI
HsaRFC3
GO:0016887 ATPase activity F
IDA
HsaRFC3
ISS
DmeFBgn0028700
GO:0000003 reproduction P
IMP
CelWBGene00004339
GO:0000731 DNA synthesis involved in DNA repair P
TAS
HsaRFC3
GO:0006200 ATP catabolic process P
ISS
SpoSPBC83.14c
GO:0006260 DNA replication P
EXP
HsaRFC3
IDA
HsaRFC3
ISS
PfaPF11_0117
GO:0006270 DNA-dependent DNA replication initiation P
ISS
SpoSPBC83.14c
GO:0006271 DNA strand elongation involved in DNA
replication		 P
ISS
PfaPF11_0117
TAS
HsaRFC3
GO:0006272 leading strand elongation P
IDA
SceS000000291
ISS
SpoSPBC83.14c
GO:0006281 DNA repair P
ISS
SpoSPBC83.14c
GO:0006297 nucleotide-excision repair, DNA gap
filling		 P
EXP
HsaRFC3
GO:0006298 mismatch repair P
TAS
SceS000000291
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00004339
GO:0007062 sister chromatid cohesion P
IMP
SceS000000291
IPI
SceS000000291
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004339
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthEMB2775
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004339
GO:0040011 locomotion P
IMP
CelWBGene00004339
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004339
GO:0046683 response to organophosphorus P
IEP
HsaRFC3

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1856

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11156 ENSANGP00000019592
Ashbya gossypii (Ago) ago1438 ADL303C
Arabidopsis thaliana (Ath) ath25048 At5g27740.1
Caenorhabditis elegans (Cel) cel3756 C39E9.13
(CE05396;
WBGene00004339)
Candida glabrata (Cgl) cgl736 CAGL0D01738g
Cryptococcus neoformans (Cne) cne4968 186.m03880
Dictyostelium discoideum (Ddi) ddi10179 DDB0219872
Debaryomyces hansenii (Dha) dha3202 DEHA0D20229g
Drosophila melanogaster (Dme) dme1974 CG6258-PA
(FBgn0028700)
Danio rerio (Dre) dre1996 ENSDARP00000027633
Danio rerio (Dre) dre2134 ENSDARP00000048423
Encephalitozoon cuniculi (Ecu) ecu603 19074687
Takifugu rubripes (Fru) fru22910 SINFRUP00000140557
Takifugu rubripes (Fru) fru22909 SINFRUP00000170318
Gallus gallus (Gga) gga3075 ENSGALP00000027512
(RFC3)		 Q5ZJP0
Homo sapiens (Hsa) hsa8657 ENSP00000255484
Kluyveromyces lactis (Kla) kla1072 KLLA0B12221g
Mus musculus (Mmu) mmu21385 ENSMUSP00000039621
(MGI:1916513)		 Q8R323
Neurospora crassa (Ncr) ncr6583 NCU06769.2
Oryza sativa (Osa) osa62438 6675.m00225
Plasmodium falciparum (Pfa) pfa1062 PF11_0117
Rattus norvegicus (Rno) rno7956 ENSRNOP00000001444
(RGD:1306832)		 Q5M830
Saccharomyces cerevisiae (Sce) sce345 YBR087W
(S000000291)
Schizosaccharomyces pombe (Spo) spo3085 SPBC83.14c O94697
Yarrowia lipolytica (Yli) yli2583 YALI0C21692g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC83.14c
GO:0005575 cellular_component C
ND
AthAt5g27740
GO:0005634 nucleus C
IDA
SpoSPBC83.14c
GO:0005663 DNA replication factor C complex C
IDA
SceS000000291
IMP
SceS000000291
ISS
DmeFBgn0028700
PfaPF11_0117
SpoSPBC83.14c
GO:0005829 cytosol C
IDA
SpoSPBC83.14c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0028700
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000000291
TAS
SpoSPBC83.14c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000000291
TAS
SpoSPBC83.14c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPBC83.14c
IPI
SceS000000291
GO:0043596 nuclear replication fork C
IC
SpoSPBC83.14c
GO:0003689 DNA clamp loader activity F
IDA
SceS000000291
ISS
DmeFBgn0028700
SpoSPBC83.14c
GO:0016887 ATPase activity F
ISS
DmeFBgn0028700
GO:0000003 reproduction P
IMP
CelWBGene00004339
GO:0006200 ATP catabolic process P
ISS
SpoSPBC83.14c
GO:0006260 DNA replication P
ISS
PfaPF11_0117
GO:0006270 DNA-dependent DNA replication initiation P
ISS
SpoSPBC83.14c
GO:0006271 DNA strand elongation involved in DNA
replication		 P
ISS
PfaPF11_0117
GO:0006272 leading strand elongation P
IDA
SceS000000291
ISS
SpoSPBC83.14c
GO:0006281 DNA repair P
ISS
SpoSPBC83.14c
GO:0006298 mismatch repair P
TAS
SceS000000291
GO:0006974 response to DNA damage stimulus P
IMP
CelWBGene00004339
GO:0007062 sister chromatid cohesion P
IMP
SceS000000291
IPI
SceS000000291
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004339
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt5g27740
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004339
GO:0040011 locomotion P
IMP
CelWBGene00004339
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004339

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC83.14c
(O94697)		 YBR087W
(S000000291)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC83.14c
GO:0005634 nucleus C
IDA
SpoSPBC83.14c
GO:0005663 DNA replication factor C complex C
IDA
SceS000000291
IMP
SceS000000291
ISS
SpoSPBC83.14c
GO:0005829 cytosol C
IDA
SpoSPBC83.14c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000000291
TAS
SpoSPBC83.14c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000000291
TAS
SpoSPBC83.14c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPBC83.14c
IPI
SceS000000291
GO:0043596 nuclear replication fork C
IC
SpoSPBC83.14c
GO:0003689 DNA clamp loader activity F
IDA
SceS000000291
ISS
SpoSPBC83.14c
GO:0006200 ATP catabolic process P
ISS
SpoSPBC83.14c
GO:0006270 DNA-dependent DNA replication initiation P
ISS
SpoSPBC83.14c
GO:0006272 leading strand elongation P
IDA
SceS000000291
ISS
SpoSPBC83.14c
GO:0006281 DNA repair P
ISS
SpoSPBC83.14c
GO:0006298 mismatch repair P
TAS
SceS000000291
GO:0007062 sister chromatid cohesion P
IMP
SceS000000291
IPI
SceS000000291

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