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Search term: YBR114W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RAD16
SGD link S000000318
Alternative ID YBR114W
Description Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex
Synonyms YBR114W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1002 A---YP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Nucleotide excision repair protein RAD16

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g02670 GI:15217826
Arabidopsis thaliana (Ath) At1g05120 GI:15220993
Saccharomyces cerevisiae (Sce) YBR114w
(S000000318)		 GI:6319590 P31244
Schizosaccharomyces pombe (Spo) SPCC330.01c GI:19075201 P79051
Arabidopsis thaliana (Ath) At1g02670 GI:15217826
Arabidopsis thaliana (Ath) At1g05120 GI:15220993
Saccharomyces cerevisiae (Sce) YBR114w
(S000000318)		 GI:6319590 P31244
Schizosaccharomyces pombe (Spo) SPCC330.01c GI:19075201 P79051


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000318
GO:0000109 nucleotide-excision repair complex C
IPI
SpoSPCC330.01c
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000000318
GO:0005575 cellular_component C
ND
AthAt1g02670
GO:0005634 nucleus C
IC
SpoSPCC330.01c
IDA
SpoSPCC330.01c
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000000318
GO:0003677 DNA binding F
ISS
AthAt1g05120
At1g02670
GO:0003684 damaged DNA binding F
IDA
SceS000000318
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPCC330.01c
GO:0004386 helicase activity F
ISS
AthAt1g02670
RCA
SceS000000318
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000000318
ISS
SpoSPCC330.01c
GO:0005515 protein binding F
IPI
SpoSPCC330.01c
GO:0005524 ATP binding F
ISS
AthAt1g05120
At1g02670
SpoSPCC330.01c
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000318
GO:0008270 zinc ion binding F
ISS
SpoSPCC330.01c
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
SceS000000318
IMP
SceS000000318
GO:0006200 ATP catabolic process P
ISS
SpoSPCC330.01c
GO:0006281 DNA repair P
ISS
AthAt1g02670
GO:0006289 nucleotide-excision repair P
IGI
SpoSPCC330.01c
TAS
SpoSPCC330.01c
GO:0016567 protein ubiquitination P
ISS
SpoSPCC330.01c
GO:0034644 cellular response to UV P
IGI
SpoSPCC330.01c
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000000318

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38418

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) rad16
(SPCC970.01)		 GI:19075201 P36617
Saccharomyces cerevisiae (Sce) RAD16
(S000000318)		 GI:6319590 P31244
Kluyveromyces lactis (Kla) KLLA0B09240g GI:50303981
Eremothecium gossypii (Ego) AGOS_ADL345C GI:45187527
Magnaporthe grisea (Mgr) MGG_07014 GI:39978259
Neurospora crassa (Ncr) NCU03650.1 GI:32404678
Arabidopsis thaliana (Ath) AT1G05120 GI:15220993
Oryza sativa (Osa) Os07g0511500 GI:115472329
Plasmodium falciparum (Pfa) PFL2440w GI:124807036


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000318
ISS
PfaPFL2440w
GO:0000109 nucleotide-excision repair complex C
ISS
SpoSPCC970.01
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000000318
GO:0005634 nucleus C
IC
SpoSPCC970.01
IDA
SpoSPCC970.01
GO:0005816 spindle pole body C
IDA
SpoSPCC970.01
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000000318
GO:0000014 single-stranded DNA specific endodeoxyribonuclease
activity		 F
ISS
SpoSPCC970.01
GO:0003677 DNA binding F
ISS
AthAt1g05120
SpoSPCC970.01
GO:0003684 damaged DNA binding F
IDA
SceS000000318
GO:0004386 helicase activity F
RCA
SceS000000318
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000000318
GO:0005524 ATP binding F
ISS
AthAt1g05120
GO:0008026 ATP-dependent helicase activity F
ISS
PfaPFL2440w
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000318
GO:0046982 protein heterodimerization activity F
IPI
SpoSPCC970.01
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
SceS000000318
IMP
SceS000000318
GO:0006289 nucleotide-excision repair P
IGI
SpoSPCC970.01
ISS
PfaPFL2440w
GO:0006296 nucleotide-excision repair, DNA incision, 5'-to
lesion		 P
TAS
SpoSPCC970.01
GO:0006311 meiotic gene conversion P
IMP
SpoSPCC970.01
GO:0007534 gene conversion at mating-type
locus		 P
IMP
SpoSPCC970.01
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000000318

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_4133

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1395 ADL345C
Arabidopsis thaliana (Ath) ath464 At1g05120.1
Candida glabrata (Cgl) cgl3855 CAGL0K07766g
Cryptococcus neoformans (Cne) cne2920 167.m03207
Cryptococcus neoformans (Cne) cne2921 167.m03678
Dictyostelium discoideum (Ddi) ddi3561 DDB0168646
Debaryomyces hansenii (Dha) dha2678 DEHA0D08668g
Debaryomyces hansenii (Dha) dha2679 DEHA0D08690g
Drosophila melanogaster (Dme) dme11435 CG10445-PA
(FBgn0037531)
Kluyveromyces lactis (Kla) kla938 KLLA0B09240g
Neurospora crassa (Ncr) ncr3541 NCU03650.2
Oryza sativa (Osa) osa68400 6909.m00068
Plasmodium falciparum (Pfa) pfa5269 PFL2440w
Saccharomyces cerevisiae (Sce) sce375 YBR114W
(S000000318)
Schizosaccharomyces pombe (Spo) spo3097 SPCC330.01c P79051
Yarrowia lipolytica (Yli) yli5386 YALI0F01232g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000318
ISS
PfaPFL2440w
GO:0000109 nucleotide-excision repair complex C
IPI
SpoSPCC330.01c
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000000318
GO:0005634 nucleus C
IC
DmeFBgn0037531
SpoSPCC330.01c
IDA
SpoSPCC330.01c
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000000318
GO:0003677 DNA binding F
ISS
AthAt1g05120
GO:0003684 damaged DNA binding F
IDA
SceS000000318
GO:0003717 RNA polymerase II transcription termination factor
activity		 F
ISS
DmeFBgn0037531
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPCC330.01c
GO:0004386 helicase activity F
RCA
SceS000000318
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000000318
ISS
SpoSPCC330.01c
GO:0005515 protein binding F
IPI
SpoSPCC330.01c
GO:0005524 ATP binding F
ISS
AthAt1g05120
SpoSPCC330.01c
GO:0008026 ATP-dependent helicase activity F
ISS
PfaPFL2440w
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000318
GO:0008270 zinc ion binding F
ISS
SpoSPCC330.01c
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0037531
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
SceS000000318
IMP
SceS000000318
GO:0006200 ATP catabolic process P
ISS
SpoSPCC330.01c
GO:0006289 nucleotide-excision repair P
IGI
SpoSPCC330.01c
ISS
PfaPFL2440w
TAS
SpoSPCC330.01c
GO:0016567 protein ubiquitination P
ISS
SpoSPCC330.01c
GO:0034644 cellular response to UV P
IGI
SpoSPCC330.01c
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000000318

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC582.10c
(Q10332)		 YBR114W
(S000000318)
SPCC330.01c
(P79051)		 YBR114W
(S000000318)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000108 repairosome C
IDA
SceS000000318
GO:0000109 nucleotide-excision repair complex C
IPI
SpoSPCC330.01c
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000000318
ISS
SpoSPBC582.10c
GO:0005634 nucleus C
IC
SpoSPCC330.01c
IDA
SpoSPCC330.01c
GO:0005737 cytoplasm C
IDA
SpoSPBC582.10c
GO:0005829 cytosol C
IDA
SpoSPBC582.10c
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000000318
GO:0003684 damaged DNA binding F
IDA
SceS000000318
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPCC330.01c
GO:0004386 helicase activity F
RCA
SceS000000318
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000000318
ISS
SpoSPCC330.01c
GO:0005515 protein binding F
IPI
SpoSPCC330.01c
GO:0005524 ATP binding F
ISS
SpoSPCC330.01c
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000318
ISS
SpoSPBC582.10c
GO:0008270 zinc ion binding F
ISS
SpoSPCC330.01c
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
SceS000000318
IMP
SceS000000318
GO:0006200 ATP catabolic process P
ISS
SpoSPCC330.01c
SPBC582.10c
GO:0006289 nucleotide-excision repair P
IGI
SpoSPCC330.01c
ISS
SpoSPBC582.10c
TAS
SpoSPCC330.01c
GO:0016567 protein ubiquitination P
ISS
SpoSPCC330.01c
GO:0034644 cellular response to UV P
IGI
SpoSPCC330.01c
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000000318

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GO info in one table:

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