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Search term: YBR154C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPB5
SGD link S000000358
Alternative ID YBR154C
Description RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects transactivation
Synonyms YBR154C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3218 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g41340 GI:15227327
Arabidopsis thaliana (Ath) At3g16680 GI:15228284
Arabidopsis thaliana (Ath) At3g22320 GI:15228724
Arabidopsis thaliana (Ath) At3g54490 GI:15232524
Arabidopsis thaliana (Ath) At3g57080 GI:15230206
Arabidopsis thaliana (Ath) At5g57980 GI:15242916
Caenorhabditis elegans (Cel) CE23831
(WBGene00019246)		 GI:17507947 Q9N5K2
Drosophila melanogaster (Dme) 7303678
(FBgn0033571)		 GI:19922004
Homo sapiens (Hsa) Hs13633291 GI:13633291
Homo sapiens (Hsa) Hs17458856 GI:17458856
Homo sapiens (Hsa) Hs14589951
(POLR2E)		 GI:14589951 P19388
Saccharomyces cerevisiae (Sce) YBR154c
(S000000358)		 GI:6319630 P20434
Schizosaccharomyces pombe (Spo) SPAC23C4.15 GI:19114099 Q09191
Encephalitozoon cuniculi (Ecu) ECU07g0960 GI:19074518 Q8SRJ3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthAt3g22320
GO:0005634 nucleus C
IDA
HsaPOLR2E
SpoSPAC23C4.15
GO:0005654 nucleoplasm C
EXP
HsaPOLR2E
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2E
SceS000000358
IPI
AthAt3g22320
ISS
DmeFBgn0033571
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000000358
IGI
SpoSPAC23C4.15
TAS
SceS000000358
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000000358
IGI
SpoSPAC23C4.15
GO:0005829 cytosol C
IDA
SpoSPAC23C4.15
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IDA
SpoSPAC23C4.15
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt3g57080
GO:0003677 DNA binding F
ISS
AthAt3g22320
At3g54490
At3g57080
At2g41340
At5g57980
GO:0003899 DNA-directed RNA polymerase activity F
IC
SceS000000358
IDA
SceS000000358
IGI
SpoSPAC23C4.15
ISS
AthAt3g57080
At2g41340
At3g54490
At5g57980
At3g22320
DmeFBgn0033571
GO:0004672 protein kinase activity F
IDA
HsaPOLR2E
GO:0005515 protein binding F
IPI
SpoSPAC23C4.15
GO:0000003 reproduction P
IMP
CelWBGene00019246
GO:0006350 transcription P
ISS
AthAt5g57980
At3g57080
At3g54490
At3g22320
At2g41340
GO:0006360 transcription from RNA polymerase I
promoter		 P
IGI
SpoSPAC23C4.15
IMP
SceS000000358
RCA
SceS000000358
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2E
SpoSPAC23C4.15
IGI
SceS000000358
IMP
SceS000000358
ISS
DmeFBgn0033571
RCA
SceS000000358
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2E
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2E
GO:0006383 transcription from RNA polymerase III
promoter		 P
IGI
SpoSPAC23C4.15
IMP
SceS000000358
GO:0008380 RNA splicing P
EXP
HsaPOLR2E
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00019246
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00019246
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000000358
GO:0051049 regulation of transport P
RCA
SceS000000358

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2018

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR2E GI:14589951 P19388
Pan troglodytes (Ptr) POLR2E GI:114674426
Canis familiaris (Cfa) POLR2E GI:73987353
Mus musculus (Mmu) Polr2e
(MGI:1913670)		 GI:124249077 Q3U2B9
Rattus norvegicus (Rno) Polr2e GI:109480253
Gallus gallus (Gga) POLR2E GI:118103219
Drosophila melanogaster (Dme) Rpb5
(FBgn0033571)		 GI:19922004
Anopheles gambiae (Aga) AgaP_AGAP010064 GI:31235339
Caenorhabditis elegans (Cel) rpb-5
(CE23831;
WBGene00019246)		 GI:17507947 Q9N5K2
Schizosaccharomyces pombe (Spo) rpb5
(SPAC23C4.15)		 GI:19114099 Q09191
Saccharomyces cerevisiae (Sce) RPB5
(S000000358)		 GI:6319630 P20434
Kluyveromyces lactis (Kla) KLLA0F21098g GI:50311991
Eremothecium gossypii (Ego) AGOS_AER036W GI:45190642
Magnaporthe grisea (Mgr) MGG_06083 GI:39975981
Neurospora crassa (Ncr) NCU05305.1 GI:32408361
Arabidopsis thaliana (Ath) NRPB5 GI:15228724
Oryza sativa (Osa) Os01g0805800 GI:115440569
Plasmodium falciparum (Pfa) PF13_0341 GI:124514006


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthNRPB5
GO:0005575 cellular_component C
ND
MmuMGI:1913670
GO:0005634 nucleus C
IDA
HsaPOLR2E
SpoSPAC23C4.15
GO:0005654 nucleoplasm C
EXP
HsaPOLR2E
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2E
SceS000000358
IPI
AthNRPB5
ISS
DmeFBgn0033571
PfaPF13_0341
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000000358
IGI
SpoSPAC23C4.15
TAS
SceS000000358
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000000358
IGI
SpoSPAC23C4.15
GO:0005829 cytosol C
IDA
SpoSPAC23C4.15
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IDA
SpoSPAC23C4.15
GO:0003674 molecular_function F
ND
MmuMGI:1913670
GO:0003677 DNA binding F
ISS
AthNRPB5
GO:0003899 DNA-directed RNA polymerase activity F
IC
SceS000000358
IDA
SceS000000358
IGI
SpoSPAC23C4.15
ISS
AthNRPB5
DmeFBgn0033571
GO:0004672 protein kinase activity F
IDA
HsaPOLR2E
GO:0005515 protein binding F
IPI
SpoSPAC23C4.15
GO:0000003 reproduction P
IMP
CelWBGene00019246
GO:0006350 transcription P
ISS
AthNRPB5
GO:0006360 transcription from RNA polymerase I
promoter		 P
IGI
SpoSPAC23C4.15
IMP
SceS000000358
RCA
SceS000000358
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2E
SpoSPAC23C4.15
IGI
SceS000000358
IMP
SceS000000358
ISS
DmeFBgn0033571
PfaPF13_0341
RCA
SceS000000358
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2E
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2E
GO:0006383 transcription from RNA polymerase III
promoter		 P
IGI
SpoSPAC23C4.15
IMP
SceS000000358
GO:0008150 biological_process P
ND
MmuMGI:1913670
GO:0008380 RNA splicing P
EXP
HsaPOLR2E
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00019246
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00019246
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000000358
GO:0051049 regulation of transport P
RCA
SceS000000358

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1654

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12364 ENSANGP00000006082
Ashbya gossypii (Ago) ago2541 AER036W
Arabidopsis thaliana (Ath) ath14540 At3g22320.1
Caenorhabditis elegans (Cel) cel11442 H27M09.2
(CE23831;
WBGene00019246)
Candida glabrata (Cgl) cgl2859 CAGL0I07799g
Cryptococcus neoformans (Cne) cne2473 181.m08514
Dictyostelium discoideum (Ddi) ddi13428 DDB0216287
Debaryomyces hansenii (Dha) dha6180 DEHA0G10846g
Drosophila melanogaster (Dme) dme4408 CG11979-PA
(FBgn0033571)
Danio rerio (Dre) dre14595 ENSDARP00000028718
(zgc:101098)		 Q6DEG5
Encephalitozoon cuniculi (Ecu) ecu1904 19074518
Takifugu rubripes (Fru) fru14149 SINFRUP00000130412
Takifugu rubripes (Fru) fru14148 SINFRUP00000166655
Gallus gallus (Gga) gga14128 ENSGALP00000004071
(POLR2E)
Homo sapiens (Hsa) hsa15199 ENSP00000215587
(POLR2E)		 P19388
Kluyveromyces lactis (Kla) kla5027 KLLA0F21098g
Mus musculus (Mmu) mmu2485 ENSMUSP00000004786
(MGI:1913670)		 Q80UW8
Neurospora crassa (Ncr) ncr5150 NCU05305.2
Oryza sativa (Osa) osa34583 4753.m00189
Oryza sativa (Osa) osa47222 5550.m00145
Plasmodium falciparum (Pfa) pfa4447 PF13_0341
Rattus norvegicus (Rno) rno26290 ENSRNOP00000018169
(RGD:1589817)		 B0BNE2
Saccharomyces cerevisiae (Sce) sce420 YBR154C
(S000000358)
Schizosaccharomyces pombe (Spo) spo3847 SPAC23C4.15 Q09191
Yarrowia lipolytica (Yli) yli2970 YALI0D06457g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthAt3g22320
GO:0005575 cellular_component C
ND
MmuMGI:1913670
GO:0005634 nucleus C
IDA
SpoSPAC23C4.15
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000000358
IPI
AthAt3g22320
ISS
DmeFBgn0033571
PfaPF13_0341
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000000358
IGI
SpoSPAC23C4.15
TAS
SceS000000358
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000000358
IGI
SpoSPAC23C4.15
GO:0005829 cytosol C
IDA
SpoSPAC23C4.15
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IDA
SpoSPAC23C4.15
GO:0003674 molecular_function F
ND
MmuMGI:1913670
GO:0003677 DNA binding F
ISS
AthAt3g22320
GO:0003899 DNA-directed RNA polymerase activity F
IC
SceS000000358
IDA
SceS000000358
IGI
SpoSPAC23C4.15
ISS
AthAt3g22320
DmeFBgn0033571
GO:0005515 protein binding F
IPI
SpoSPAC23C4.15
GO:0000003 reproduction P
IMP
CelWBGene00019246
GO:0006350 transcription P
ISS
AthAt3g22320
GO:0006360 transcription from RNA polymerase I
promoter		 P
IGI
SpoSPAC23C4.15
IMP
SceS000000358
RCA
SceS000000358
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
SpoSPAC23C4.15
IGI
SceS000000358
IMP
SceS000000358
ISS
DmeFBgn0033571
PfaPF13_0341
RCA
SceS000000358
GO:0006383 transcription from RNA polymerase III
promoter		 P
IGI
SpoSPAC23C4.15
IMP
SceS000000358
GO:0008150 biological_process P
ND
MmuMGI:1913670
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00019246
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00019246
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000000358
GO:0051049 regulation of transport P
RCA
SceS000000358

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC23C4.15
(Q09191)		 YBR154C
(S000000358)