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Search term: YBR186W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PCH2
SGD link S000000390
Alternative ID YBR186W
Description Nucleolar component of the pachytene checkpoint, which prevents chromosome segregation when recombination and chromosome synapsis are defective; also represses meiotic interhomolog recombination in the rDNA
Synonyms YBR186W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0744 ACDHY--

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING AAA+-type ATPase

Species KOG link NCBI link UniProt link
Drosophila melanogaster (Dme) 7299049 GI:20151587
Arabidopsis thaliana (Ath) At4g24710 GI:15233941
Homo sapiens (Hsa) Hs11321607
(TRIP13)		 GI:11321607 Q15645
Caenorhabditis elegans (Cel) CE01547
(WBGene00008641)		 GI:17533043 Q09535
Saccharomyces cerevisiae (Sce) YBR186w
(S000000390)		 GI:9755327 P38126
Drosophila melanogaster (Dme) 7299049 GI:20151587
Arabidopsis thaliana (Ath) At4g24710 GI:15233941
Homo sapiens (Hsa) Hs11321607
(TRIP13)		 GI:11321607 Q15645
Caenorhabditis elegans (Cel) CE01547
(WBGene00008641)		 GI:17533043 Q09535
Saccharomyces cerevisiae (Sce) YBR186w
(S000000390)		 GI:9755327 P38126


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
TAS
HsaTRIP13
GO:0005730 nucleolus C
IDA
SceS000000390
GO:0003674 molecular_function F
ND
SceS000000390
GO:0003712 transcription cofactor activity F
TAS
HsaTRIP13
GO:0005515 protein binding F
IPI
HsaTRIP13
GO:0005524 ATP binding F
NAS
HsaTRIP13
GO:0016887 ATPase activity F
ISS
AthAt4g24710
GO:0042802 identical protein binding F
IPI
HsaTRIP13
GO:0006366 transcription from RNA polymerase II
promoter		 P
TAS
HsaTRIP13
GO:0007126 meiosis P
IMP
CelWBGene00008641
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008641
GO:0040020 regulation of meiosis P
TAS
SceS000000390

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3125

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) TRIP13 GI:11321607 Q15645
Pan troglodytes (Ptr) TRIP13 GI:114598830
Canis familiaris (Cfa) TRIP13 GI:74003129
Mus musculus (Mmu) Trip13
(MGI:1916966)		 GI:110625724 A0JNT8
Rattus norvegicus (Rno) Trip13
(RGD:1308516)		 GI:58865438
Gallus gallus (Gga) TRIP13 GI:118086321
Drosophila melanogaster (Dme) CG31453
(FBgn0051453)		 GI:28573181
Anopheles gambiae (Aga) AgaP_AGAP001522 GI:158301936
Caenorhabditis elegans (Cel) pch-2
(CE01547;
WBGene00008641)		 GI:17533043 Q09535
Saccharomyces cerevisiae (Sce) PCH2
(S000000390)		 GI:9755327 P38126
Eremothecium gossypii (Ego) AGOS_AEL258W GI:45190349
Arabidopsis thaliana (Ath) AT4G24710 GI:79485764
Oryza sativa (Osa) Os04g0479000 GI:115458982


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0001673 male germ cell nucleus C
IDA
MmuMGI:1916966
GO:0005634 nucleus C
TAS
HsaTRIP13
GO:0005730 nucleolus C
IDA
SceS000000390
GO:0003674 molecular_function F
ND
SceS000000390
GO:0003712 transcription cofactor activity F
TAS
HsaTRIP13
GO:0005515 protein binding F
IPI
HsaTRIP13
MmuMGI:1916966
GO:0005524 ATP binding F
NAS
HsaTRIP13
GO:0016887 ATPase activity F
ISS
AthAt4g24710
GO:0042802 identical protein binding F
IPI
HsaTRIP13
MmuMGI:1916966
GO:0000239 pachytene P
IMP
MmuMGI:1916966
GO:0001556 oocyte maturation P
IMP
MmuMGI:1916966
GO:0006302 double-strand break repair P
IMP
MmuMGI:1916966
GO:0006366 transcription from RNA polymerase II
promoter		 P
TAS
HsaTRIP13
GO:0007126 meiosis P
IMP
CelWBGene00008641
GO:0007131 reciprocal meiotic recombination P
IMP
MmuMGI:1916966
GO:0007141 male meiosis I P
IMP
MmuMGI:1916966
GO:0007144 female meiosis I P
IMP
MmuMGI:1916966
GO:0007286 spermatid development P
IMP
MmuMGI:1916966
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008641
GO:0040020 regulation of meiosis P
TAS
SceS000000390

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3260

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3618 ENSANGP00000011549
Ashbya gossypii (Ago) ago2248 AEL258W
Arabidopsis thaliana (Ath) ath20440 At4g24710.1
Caenorhabditis elegans (Cel) cel5868 F10B5.5
(CE01547;
WBGene00008641)
Candida glabrata (Cgl) cgl4937 CAGL0M06435g
Cryptococcus neoformans (Cne) cne3486 176.m02492
Dictyostelium discoideum (Ddi) ddi5034 DDB0205041
Debaryomyces hansenii (Dha) dha4792 DEHA0F09229g
Drosophila melanogaster (Dme) dme11528 CG31453-PA
(FBgn0051453)
Danio rerio (Dre) dre28067 ENSDARP00000049098
(trip13)		 Q6PH52
Takifugu rubripes (Fru) fru7963 SINFRUP00000145225
Gallus gallus (Gga) gga10355 ENSGALP00000020406
(TRIP13)
Homo sapiens (Hsa) hsa24985 ENSP00000166345
(TRIP13)		 Q15645-1
Homo sapiens (Hsa) hsa24984 ENSP00000346185
(TRIP13)		 C9K0T3
Kluyveromyces lactis (Kla) kla4024 KLLA0E23848g
Mus musculus (Mmu) mmu7250 ENSMUSP00000022053
(MGI:1916966)		 Q3UA06
Oryza sativa (Osa) osa42634 5414.m00223
Plasmodium falciparum (Pfa) pfa855 PF11_0405
Rattus norvegicus (Rno) rno346 ENSRNOP00000021532
(RGD:1308516)		 Q5XHZ9
Saccharomyces cerevisiae (Sce) sce454 YBR186W
(S000000390)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0001673 male germ cell nucleus C
IDA
MmuMGI:1916966
GO:0005575 cellular_component C
ND
PfaPF11_0405
GO:0005730 nucleolus C
IDA
SceS000000390
GO:0003674 molecular_function F
ND
SceS000000390
GO:0005515 protein binding F
IPI
MmuMGI:1916966
GO:0016887 ATPase activity F
ISS
AthAt4g24710
GO:0042802 identical protein binding F
IPI
MmuMGI:1916966
GO:0000239 pachytene P
IMP
MmuMGI:1916966
GO:0001556 oocyte maturation P
IMP
MmuMGI:1916966
GO:0006302 double-strand break repair P
IMP
MmuMGI:1916966
GO:0007126 meiosis P
IMP
CelWBGene00008641
GO:0007131 reciprocal meiotic recombination P
IMP
MmuMGI:1916966
GO:0007141 male meiosis I P
IMP
MmuMGI:1916966
GO:0007144 female meiosis I P
IMP
MmuMGI:1916966
GO:0007286 spermatid development P
IMP
MmuMGI:1916966
GO:0008150 biological_process P
ND
PfaPF11_0405
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008641
GO:0040020 regulation of meiosis P
TAS
SceS000000390

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GO info in one table:

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