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Search term: YBR187W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name GDT1
SGD link S000000391
Alternative ID YBR187W
Description Putative protein of unknown function; expression is reduced in a gcr1 null mutant; GFP-fusion protein localizes to the vacuole; expression pattern and physical interactions suggest a possible role in ribosome biogenesis
Synonyms YBR187W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2881 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted membrane protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g25520 GI:15222613
Arabidopsis thaliana (Ath) At1g64150 GI:15222632
Arabidopsis thaliana (Ath) At1g68650 GI:15221462
Arabidopsis thaliana (Ath) At4g13590 GI:15236316
Arabidopsis thaliana (Ath) At5g36290 GI:9759042
Caenorhabditis elegans (Cel) CE27004
(WBGene00021847)
GI:17556152 Q9BL67
Caenorhabditis elegans (Cel) CE27005 GI:17556150 Q9BL67
Drosophila melanogaster (Dme) 7299965 GI:7299965
Homo sapiens (Hsa) Hs8923861 GI:8923861
Saccharomyces cerevisiae (Sce) YBR187w
(S000000391)
GI:6319664 P38301
Schizosaccharomyces pombe (Spo) SPAC17G8.08c GI:19114643 Q10320
Schizosaccharomyces pombe (Spo) SPAC186.05c GI:19115935 Q9P7Q0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000000391
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC17G8.08c
SPAC186.05c
GO:0005794 Golgi apparatus C
IDA
SpoSPAC17G8.08c
GO:0009507 chloroplast C
IDA
AthAt4g13590
GO:0009706 chloroplast inner membrane C
IDA
AthAt4g13590
GO:0009941 chloroplast envelope C
IDA
AthAt4g13590
GO:0003674 molecular_function F
ND
AthAt1g68650
At5g36290
SceS000000391
SpoSPAC17G8.08c
SPAC186.05c
GO:0008150 biological_process P
ND
AthAt5g36290
At1g68650
SceS000000391
SpoSPAC186.05c
SPAC17G8.08c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5411

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) TMEM165 GI:32189371
Pan troglodytes (Ptr) TMEM165 GI:114594726
Canis familiaris (Cfa) TMEM165 GI:73975293
Mus musculus (Mmu) Tmem165
(MGI:894407)
GI:111154067 B2RUD1
Rattus norvegicus (Rno) Tmem165 GI:67078416
Gallus gallus (Gga) TMEM165 GI:118090509
Drosophila melanogaster (Dme) CG4196
(FBgn0038297)
GI:21357589
Anopheles gambiae (Aga) AgaP_AGAP011962 GI:158300716
Caenorhabditis elegans (Cel) Y54F10AL.1
(CE27004;
WBGene00021847)
GI:17556152 Q9BL67
Schizosaccharomyces pombe (Spo) SPAC17G8.08c GI:19114643 Q10320
Schizosaccharomyces pombe (Spo) SPAC186.05c GI:19115935 Q9P7Q0
Saccharomyces cerevisiae (Sce) GDT1
(S000000391)
GI:6319664 P38301
Kluyveromyces lactis (Kla) KLLA0E23826g GI:50310021
Eremothecium gossypii (Ego) AGOS_AEL257W GI:45190350
Magnaporthe grisea (Mgr) MGG_12672 GI:145610376
Neurospora crassa (Ncr) NCU01990.1 GI:32417404
Arabidopsis thaliana (Ath) AT5G36290 GI:18421551
Oryza sativa (Osa) Os08g0528500 GI:115477433
Oryza sativa (Osa) Os11g0472500 GI:115485473


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000000391
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC17G8.08c
SPAC186.05c
GO:0005794 Golgi apparatus C
IDA
SpoSPAC17G8.08c
GO:0003674 molecular_function F
ND
AthAt5g36290
MmuMGI:894407
SceS000000391
SpoSPAC17G8.08c
SPAC186.05c
GO:0008150 biological_process P
ND
AthAt5g36290
SceS000000391
SpoSPAC186.05c
SPAC17G8.08c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1603

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9111 ENSANGP00000008699
Ashbya gossypii (Ago) ago2249 AEL257W
Arabidopsis thaliana (Ath) ath2713 At1g25520.1
Arabidopsis thaliana (Ath) ath6119 At1g68650.1
Arabidopsis thaliana (Ath) ath25412 At5g36290.1
Arabidopsis thaliana (Ath) ath25413 At5g36290.2
Caenorhabditis elegans (Cel) cel19750 Y54F10AL.1a
(CE27004;
WBGene00021847)
Caenorhabditis elegans (Cel) cel19751 Y54F10AL.1b
(CE27005)
Candida glabrata (Cgl) cgl4938 CAGL0M06457g
Cryptococcus neoformans (Cne) cne3258 167.m03608
Debaryomyces hansenii (Dha) dha4794 DEHA0F09273g
Drosophila melanogaster (Dme) dme12679 CG4196-PB
(FBgn0038297)
Drosophila melanogaster (Dme) dme12678 CG4196-PC
(FBgn0038297)
Danio rerio (Dre) dre27191 ENSDARP00000041598
Danio rerio (Dre) dre12365 ENSDARP00000047623
(tmem165)
Q8JJ62
Takifugu rubripes (Fru) fru30220 SINFRUP00000133468
Gallus gallus (Gga) gga18062 ENSGALP00000022363
(SRD5A3)
Homo sapiens (Hsa) hsa24112 ENSP00000257288
Kluyveromyces lactis (Kla) kla4023 KLLA0E23826g
Mus musculus (Mmu) mmu20245 ENSMUSP00000031144
(MGI:894407)
P52875
Neurospora crassa (Ncr) ncr1934 NCU01990.2
Oryza sativa (Osa) osa28638 4205.m00140
Oryza sativa (Osa) osa71199 7159.m00186
Oryza sativa (Osa) osa74414 7297.m00088
Rattus norvegicus (Rno) rno10281 ENSRNOP00000003010
(RGD:1306983)
Q4V899
Saccharomyces cerevisiae (Sce) sce455 YBR187W
(S000000391)
Schizosaccharomyces pombe (Spo) spo1560 SPAC17G8.08c Q10320
Schizosaccharomyces pombe (Spo) spo3411 SPAC186.05c Q9P7Q0
Yarrowia lipolytica (Yli) yli2014 YALI0C07304g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000000391
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC17G8.08c
SPAC186.05c
GO:0005794 Golgi apparatus C
IDA
SpoSPAC17G8.08c
GO:0003674 molecular_function F
ND
AthAt1g68650
At5g36290
MmuMGI:894407
SceS000000391
SpoSPAC17G8.08c
SPAC186.05c
GO:0008150 biological_process P
ND
AthAt5g36290
At1g68650
SceS000000391
SpoSPAC186.05c
SPAC17G8.08c

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC186.05c
(Q9P7Q0)
YBR187W
(S000000391)
SPAC17G8.08c
(Q10320)
YBR187W
(S000000391)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000000391
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC17G8.08c
SPAC186.05c
GO:0005794 Golgi apparatus C
IDA
SpoSPAC17G8.08c
GO:0003674 molecular_function F
ND
SceS000000391
SpoSPAC17G8.08c
SPAC186.05c
GO:0008150 biological_process P
ND
SceS000000391
SpoSPAC186.05c
SPAC17G8.08c

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s.khadayate@ucl.ac.uk