YOGY Home YOGY Help

Search term: YBR236C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ABD1
SGD link S000000440
Alternative ID YBR236C
Description Methyltransferase, catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA
Synonyms YBR236C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1975 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA cap methyltransferase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g20650 GI:15232316
Caenorhabditis elegans (Cel) CE08368 GI:17505697
Drosophila melanogaster (Dme) 7298196 GI:17647567
Homo sapiens (Hsa) Hs4506567
(RNMT)		 GI:4506567 Q9UEB8
Saccharomyces cerevisiae (Sce) YBR236c
(S000000440)		 GI:6319713 P32783
Schizosaccharomyces pombe (Spo) SPCC330.10 GI:19075210 O74880
Encephalitozoon cuniculi (Ecu) ECU10g0380 GI:19074647 Q8SR66


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
HsaRNMT
SpoSPCC330.10
IGI
SpoSPCC330.10
IPI
SceS000000440
GO:0005654 nucleoplasm C
EXP
HsaRNMT
GO:0005829 cytosol C
IDA
SpoSPCC330.10
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IPI
SceS000000440
ISS
SpoSPCC330.10
GO:0032153 cell division site C
IDA
SpoSPCC330.10
GO:0070693 P-TEFb-cap methyltransferase complex C
IDA
SpoSPCC330.10
GO:0003723 RNA binding F
IMP
HsaRNMT
GO:0003824 catalytic activity F
ISS
AthAt3g20650
GO:0004482 mRNA (guanine-N7-)-methyltransferase
activity		 F
EXP
HsaRNMT
IDA
SceS000000440
IGI
SpoSPCC330.10
IMP
HsaRNMT
ISS
SceS000000440
GO:0001510 RNA methylation P
IC
SpoSPCC330.10
GO:0006370 mRNA capping P
IDA
SceS000000440
IGI
SpoSPCC330.10
IMP
HsaRNMT
ISS
AthAt3g20650
GO:0080009 mRNA methylation P
IGI
SpoSPCC330.10

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2816

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RNMT GI:4506567 Q9UEB8
Pan troglodytes (Ptr) RNMT GI:114672086
Canis familiaris (Cfa) RNMT GI:73945984
Mus musculus (Mmu) Rnmt
(MGI:1915147)		 GI:13385938 Q9D0L8
Rattus norvegicus (Rno) Rnmt
(RGD:1309242)		 GI:56605632
Gallus gallus (Gga) RNMT GI:50736564
Drosophila melanogaster (Dme) l(2)35Bd
(FBgn0001974)		 GI:24584376
Anopheles gambiae (Aga) AgaP_AGAP003460 GI:158290166
Caenorhabditis elegans (Cel) tag-72
(CE36918;
WBGene00006447)		 GI:71980935
Schizosaccharomyces pombe (Spo) pcm1
(SPCC330.10)		 GI:19075210 O74880
Saccharomyces cerevisiae (Sce) ABD1
(S000000440)		 GI:6319713 P32783
Kluyveromyces lactis (Kla) KLLA0F10527g GI:50311071
Eremothecium gossypii (Ego) AGOS_AFL026W GI:45198493
Magnaporthe grisea (Mgr) MGG_06505 GI:39977205
Neurospora crassa (Ncr) NCU03971.1 GI:32405354
Arabidopsis thaliana (Ath) AT3G20650 GI:42565060
Oryza sativa (Osa) Os08g0180000 GI:115475079


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
HsaRNMT
SpoSPCC330.10
IGI
SpoSPCC330.10
IPI
SceS000000440
ISS
DmeFBgn0001974
GO:0005654 nucleoplasm C
EXP
HsaRNMT
GO:0005829 cytosol C
IDA
SpoSPCC330.10
GO:0005845 mRNA cap binding complex C
ISO
MmuMGI:1915147
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IPI
SceS000000440
ISS
SpoSPCC330.10
GO:0032153 cell division site C
IDA
SpoSPCC330.10
GO:0070693 P-TEFb-cap methyltransferase complex C
IDA
SpoSPCC330.10
GO:0003723 RNA binding F
IMP
HsaRNMT
ISS
DmeFBgn0001974
GO:0003824 catalytic activity F
ISS
AthAt3g20650
GO:0004482 mRNA (guanine-N7-)-methyltransferase
activity		 F
EXP
HsaRNMT
IDA
SceS000000440
IGI
SpoSPCC330.10
IMP
HsaRNMT
ISO
MmuMGI:1915147
ISS
DmeFBgn0001974
SceS000000440
GO:0001510 RNA methylation P
IC
SpoSPCC330.10
GO:0006370 mRNA capping P
IDA
SceS000000440
IGI
SpoSPCC330.10
IMP
HsaRNMT
ISO
MmuMGI:1915147
ISS
AthAt3g20650
DmeFBgn0001974
GO:0080009 mRNA methylation P
IGI
SpoSPCC330.10
ISO
MmuMGI:1915147

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1916

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5872 ENSANGP00000013646
Ashbya gossypii (Ago) ago3167 AFL026W
Arabidopsis thaliana (Ath) ath14361 At3g20650.1
Arabidopsis thaliana (Ath) ath14362 At3g20650.2
Caenorhabditis elegans (Cel) cel2624 C25A1.3
(CE36918;
WBGene00006447)
Candida glabrata (Cgl) cgl3825 CAGL0K07051g
Cryptococcus neoformans (Cne) cne5283 179.m00132
Dictyostelium discoideum (Ddi) ddi6542 DDB0205479
Debaryomyces hansenii (Dha) dha4651 DEHA0F05940g
Drosophila melanogaster (Dme) dme2464 CG3688-PA
(FBgn0001974)
Danio rerio (Dre) dre10314 ENSDARP00000022448
Encephalitozoon cuniculi (Ecu) ecu563 19074647
Takifugu rubripes (Fru) fru11069 SINFRUP00000135983
Gallus gallus (Gga) gga10911 ENSGALP00000022479
(RNMT)
Homo sapiens (Hsa) hsa14760 ENSP00000262173
(RNMT)		 A8K946
Kluyveromyces lactis (Kla) kla4559 KLLA0F10527g
Mus musculus (Mmu) mmu12877 ENSMUSP00000009679
(MGI:1915147)		 Q9D0L8-1
Mus musculus (Mmu) mmu12876 ENSMUSP00000025427
(MGI:1915147)		 Q9D0L8-3
Neurospora crassa (Ncr) ncr3858 NCU03971.2
Oryza sativa (Osa) osa22258 3626.m00159
Plasmodium falciparum (Pfa) pfa2350 PF07_0020
Rattus norvegicus (Rno) rno14342 ENSRNOP00000022410
(RGD:1309242)		 Q5U2U7
Rattus norvegicus (Rno) rno14343 ENSRNOP00000022411
(RGD:1309242)
Saccharomyces cerevisiae (Sce) sce512 YBR236C
(S000000440)
Schizosaccharomyces pombe (Spo) spo3836 SPCC330.10 O74880
Yarrowia lipolytica (Yli) yli2271 YALI0C13618g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC330.10
IGI
SpoSPCC330.10
IPI
SceS000000440
ISS
DmeFBgn0001974
GO:0005829 cytosol C
IDA
SpoSPCC330.10
GO:0005845 mRNA cap binding complex C
ISO
MmuMGI:1915147
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IPI
SceS000000440
ISS
SpoSPCC330.10
GO:0032153 cell division site C
IDA
SpoSPCC330.10
GO:0070693 P-TEFb-cap methyltransferase complex C
IDA
SpoSPCC330.10
GO:0003723 RNA binding F
ISS
DmeFBgn0001974
GO:0003824 catalytic activity F
ISS
AthAt3g20650
GO:0004482 mRNA (guanine-N7-)-methyltransferase
activity		 F
IDA
SceS000000440
IGI
SpoSPCC330.10
ISO
MmuMGI:1915147
ISS
DmeFBgn0001974
SceS000000440
GO:0001510 RNA methylation P
IC
SpoSPCC330.10
GO:0006370 mRNA capping P
IDA
SceS000000440
IGI
SpoSPCC330.10
ISO
MmuMGI:1915147
ISS
AthAt3g20650
DmeFBgn0001974
GO:0080009 mRNA methylation P
IGI
SpoSPCC330.10
ISO
MmuMGI:1915147

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC330.10
(O74880)		 YBR236C
(S000000440)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC330.10
IGI
SpoSPCC330.10
IPI
SceS000000440
GO:0005829 cytosol C
IDA
SpoSPCC330.10
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
IPI
SceS000000440
ISS
SpoSPCC330.10
GO:0032153 cell division site C
IDA
SpoSPCC330.10
GO:0070693 P-TEFb-cap methyltransferase complex C
IDA
SpoSPCC330.10
GO:0004482 mRNA (guanine-N7-)-methyltransferase
activity		 F
IDA
SceS000000440
IGI
SpoSPCC330.10
ISS
SceS000000440
GO:0001510 RNA methylation P
IC
SpoSPCC330.10
GO:0006370 mRNA capping P
IDA
SceS000000440
IGI
SpoSPCC330.10
GO:0080009 mRNA methylation P
IGI
SpoSPCC330.10

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk