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Search term: YBR245C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ISW1
SGD link S000000449
Alternative ID YBR245C
Description Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase that forms a complex with Ioc2p and Ioc4p to regulate transcription elongation, and a complex with Ioc3p to repress transcription initiation
Synonyms YBR245C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0385 ACDHY-E

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Chromatin remodeling complex WSTF-ISWI, small subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g44980 GI:15225385
Arabidopsis thaliana (Ath) At3g06400 GI:15230713
Arabidopsis thaliana (Ath) At5g18620 GI:15238887
Arabidopsis thaliana (Ath) At5g66750 GI:15240074
Caenorhabditis elegans (Cel) CE00789 GI:17553296
Drosophila melanogaster (Dme) 7303422
(FBgn0011604)		 GI:17737463
Homo sapiens (Hsa) Hs14767157 GI:14767157
Homo sapiens (Hsa) Hs20536191 GI:20536191
Homo sapiens (Hsa) Hs21071044
(SMARCA1)		 GI:21071044 B1AJV0
Homo sapiens (Hsa) Hs21071046 GI:21071046
Homo sapiens (Hsa) Hs21071058
(SMARCA5)		 GI:21071058 O60264
Homo sapiens (Hsa) Hs21914927 GI:18574823
Homo sapiens (Hsa) Hs4757978 GI:4757978
Homo sapiens (Hsa) HsM8922362 GI:8922362
Saccharomyces cerevisiae (Sce) YBR245c
(S000000449)		 GI:6319722 P38144
Saccharomyces cerevisiae (Sce) YFR038w
(S000001934)		 GI:14318563
Saccharomyces cerevisiae (Sce) YOR304w
(S000005831)		 GI:6324879 Q08773
Encephalitozoon cuniculi (Ecu) ECU10g1320 GI:19074741 Q8SUC5
Arabidopsis thaliana (Ath) At2g44980 GI:15225385
Arabidopsis thaliana (Ath) At3g06400 GI:15230713
Arabidopsis thaliana (Ath) At5g18620 GI:15238887
Arabidopsis thaliana (Ath) At5g66750 GI:15240074
Caenorhabditis elegans (Cel) CE00789 GI:17553296
Drosophila melanogaster (Dme) 7303422
(FBgn0011604)		 GI:17737463
Homo sapiens (Hsa) Hs14767157 GI:14767157
Homo sapiens (Hsa) Hs20536191 GI:20536191
Homo sapiens (Hsa) Hs21071044
(SMARCA1)		 GI:21071044 B1AJV0
Homo sapiens (Hsa) Hs21071046 GI:21071046
Homo sapiens (Hsa) Hs21071058
(SMARCA5)		 GI:21071058 O60264
Homo sapiens (Hsa) Hs21914927 GI:18574823
Homo sapiens (Hsa) Hs4757978 GI:4757978
Homo sapiens (Hsa) HsM8922362 GI:8922362
Saccharomyces cerevisiae (Sce) YBR245c
(S000000449)		 GI:6319722 P38144
Saccharomyces cerevisiae (Sce) YFR038w
(S000001934)		 GI:14318563
Saccharomyces cerevisiae (Sce) YOR304w
(S000005831)		 GI:6324879 Q08773
Encephalitozoon cuniculi (Ecu) ECU10g1320 GI:19074741 Q8SUC5
Arabidopsis thaliana (Ath) At2g44980 GI:15225385
Arabidopsis thaliana (Ath) At3g06400 GI:15230713
Arabidopsis thaliana (Ath) At5g18620 GI:15238887
Arabidopsis thaliana (Ath) At5g66750 GI:15240074
Caenorhabditis elegans (Cel) CE00789 GI:17553296
Drosophila melanogaster (Dme) 7303422
(FBgn0011604)		 GI:17737463
Homo sapiens (Hsa) Hs14767157 GI:14767157
Homo sapiens (Hsa) Hs20536191 GI:20536191
Homo sapiens (Hsa) Hs21071044
(SMARCA1)		 GI:21071044 B1AJV0
Homo sapiens (Hsa) Hs21071046 GI:21071046
Homo sapiens (Hsa) Hs21071058
(SMARCA5)		 GI:21071058 O60264
Homo sapiens (Hsa) Hs21914927 GI:18574823
Homo sapiens (Hsa) Hs4757978 GI:4757978
Homo sapiens (Hsa) HsM8922362 GI:8922362
Saccharomyces cerevisiae (Sce) YBR245c
(S000000449)		 GI:6319722 P38144
Saccharomyces cerevisiae (Sce) YFR038w
(S000001934)		 GI:14318563
Saccharomyces cerevisiae (Sce) YOR304w
(S000005831)		 GI:6324879 Q08773
Encephalitozoon cuniculi (Ecu) ECU10g1320 GI:19074741 Q8SUC5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000786 nucleosome C
IDA
AthAt5g66750
GO:0000793 condensed chromosome C
IDA
HsaSMARCA5
GO:0005575 cellular_component C
ND
SceS000001934
GO:0005634 nucleus C
IDA
HsaSMARCA1
SMARCA5
IPI
SceS000005831
GO:0005654 nucleoplasm C
TAS
HsaSMARCA5
GO:0005667 transcription factor complex C
IPI
DmeFBgn0011604
GO:0005700 polytene chromosome C
IDA
DmeFBgn0011604
GO:0005730 nucleolus C
IDA
HsaSMARCA5
GO:0008623 chromatin accessibility complex C
IDA
DmeFBgn0011604
IPI
SceS000005831
ISS
SceS000005831
NAS
DmeFBgn0011604
TAS
DmeFBgn0011604
GO:0016585 chromatin remodeling complex C
ISS
DmeFBgn0011604
GO:0016587 ISW1 complex C
IPI
SceS000000449
GO:0016589 NURF complex C
IDA
DmeFBgn0011604
NAS
DmeFBgn0011604
TAS
DmeFBgn0011604
GO:0016590 ACF complex C
IDA
DmeFBgn0011604
NAS
DmeFBgn0011604
TAS
DmeFBgn0011604
GO:0031213 RSF complex C
IPI
DmeFBgn0011604
HsaSMARCA5
GO:0043596 nuclear replication fork C
IDA
HsaSMARCA5
GO:0000166 nucleotide binding F
TAS
DmeFBgn0011604
GO:0003674 molecular_function F
ND
SceS000001934
GO:0003677 DNA binding F
IDA
HsaSMARCA5
SceS000000449
ISS
AthAt2g44980
GO:0003678 DNA helicase activity F
TAS
DmeFBgn0011604
GO:0003697 single-stranded DNA binding F
IDA
SceS000005831
GO:0003702 RNA polymerase II transcription factor
activity		 F
TAS
HsaSMARCA5
GO:0004386 helicase activity F
ISS
AthAt2g44980
At5g66750
GO:0005515 protein binding F
IPI
DmeFBgn0011604
HsaSMARCA1
SMARCA5
GO:0005524 ATP binding F
IDA
HsaSMARCA5
ISS
AthAt2g44980
DmeFBgn0011604
GO:0008094 DNA-dependent ATPase activity F
IDA
DmeFBgn0011604
HsaSMARCA1
IGI
DmeFBgn0011604
ISS
AthAt5g18620
At3g06400
RCA
SceS000001934
GO:0015616 DNA translocase activity F
IDA
SceS000005831
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0011604
GO:0016887 ATPase activity F
IDA
AthAt5g66750
HsaSMARCA5
SceS000000449
NAS
DmeFBgn0011604
RCA
SceS000001934
GO:0030528 transcription regulator activity F
IMP
HsaSMARCA1
ISS
AthAt2g44980
GO:0031491 nucleosome binding F
IDA
SceS000000449
GO:0042393 histone binding F
IDA
HsaSMARCA5
GO:0042623 ATPase activity, coupled F
RCA
SceS000000449
S000001934
GO:0000183 chromatin silencing at rDNA P
IMP
SceS000005831
GO:0006312 mitotic recombination P
IMP
SceS000001934
GO:0006333 chromatin assembly or disassembly P
IDA
DmeFBgn0011604
TAS
DmeFBgn0011604
GO:0006334 nucleosome assembly P
IDA
DmeFBgn0011604
HsaSMARCA5
GO:0006338 chromatin remodeling P
IDA
HsaSMARCA1
SMARCA5
IGI
SceS000000449
S000005831
IMP
SceS000000449
S000005831
IPI
SceS000000449
S000005831
NAS
DmeFBgn0011604
TAS
DmeFBgn0011604
GO:0006346 methylation-dependent chromatin
silencing		 P
IMP
AthAt5g66750
GO:0006348 chromatin silencing at telomere P
IMP
SceS000005831
GO:0006350 transcription P
IDA
DmeFBgn0011604
GO:0006352 transcription initiation P
IDA
HsaSMARCA5
GO:0006354 RNA elongation P
IDA
SceS000000449
IMP
SceS000000449
GO:0006355 regulation of transcription, DNA-dependent P
IDA
DmeFBgn0011604
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
HsaSMARCA5
GO:0007420 brain development P
IMP
HsaSMARCA1
GO:0007517 muscle organ development P
IMP
DmeFBgn0011604
GO:0009294 DNA mediated transformation P
IMP
AthAt5g66750
GO:0009553 embryo sac development P
IMP
AthAt3g06400
GO:0009890 negative regulation of biosynthetic
process		 P
RCA
SceS000000449
GO:0016049 cell growth P
IMP
AthAt3g06400
GO:0016481 negative regulation of transcription P
RCA
SceS000000449
S000005831
GO:0016584 nucleosome positioning P
IDA
DmeFBgn0011604
HsaSMARCA5
SceS000005831
IGI
SceS000000449
IMP
SceS000000449
GO:0030182 neuron differentiation P
ISS
HsaSMARCA1
GO:0032197 transposition, RNA-mediated P
IMP
AthAt5g66750
GO:0032582 negative regulation of gene-specific
transcription		 P
IMP
DmeFBgn0011604
GO:0035076 ecdysone receptor-mediated signaling
pathway		 P
IGI
DmeFBgn0011604
GO:0042752 regulation of circadian rhythm P
IMP
DmeFBgn0011604
GO:0042766 nucleosome mobilization P
IDA
DmeFBgn0011604
TAS
DmeFBgn0011604
GO:0043044 ATP-dependent chromatin remodeling P
IMP
HsaSMARCA5
GO:0043193 positive regulation of gene-specific
transcription		 P
IMP
HsaSMARCA1
GO:0045941 positive regulation of transcription P
RCA
SceS000000449
S000005831
TAS
DmeFBgn0011604
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IMP
SceS000000449
GO:0046020 negative regulation of transcription from RNA
polymerase II promoter by pheromones		 P
IMP
SceS000005831
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0011604
GO:0051276 chromosome organization P
RCA
SceS000000449
GO:0060195 negative regulation of antisense RNA
transcription		 P
IGI
SceS000005831

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
55764

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SMARCA5 GI:21071058 O60264
Pan troglodytes (Ptr) SMARCA5 GI:114596223
Canis familiaris (Cfa) SMARCA5 GI:57096815
Mus musculus (Mmu) Smarca5
(MGI:1935129)		 GI:40254124 Q3U0F8
Rattus norvegicus (Rno) Smarca5 GI:34851567
Gallus gallus (Gga) SMARCA5 GI:118089929
Saccharomyces cerevisiae (Sce) ISW1
(S000000449)		 GI:6319722 P38144
Kluyveromyces lactis (Kla) KLLA0F06710g GI:50310725
Eremothecium gossypii (Ego) AGOS_AFL040W GI:45198479
Magnaporthe grisea (Mgr) MGG_01012 GI:145610651
Neurospora crassa (Ncr) NCU03875.1 GI:32405162
Arabidopsis thaliana (Ath) CHR11 GI:22330875
Arabidopsis thaliana (Ath) CHR17 GI:30686915
Oryza sativa (Osa) Os01g0367900 GI:115436572
Oryza sativa (Osa) Os05g0150300 GI:115462129