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Search term: YBR256C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RIB5
SGD link S000000460
Alternative ID YBR256C
Description Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway
Synonyms YBR256C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3310 A---YP-

KOGs classification KOGs description
METABOLISM Riboflavin synthase alpha chain

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g20690 GI:15225407
Saccharomyces cerevisiae (Sce) YBR256c
(S000000460)
GI:6319733 P38145
Schizosaccharomyces pombe (Spo) SPCC1450.13c GI:19075812 Q9Y7P0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005625 soluble fraction C
IDA
SceS000000460
GO:0005634 nucleus C
IDA
SpoSPCC1450.13c
GO:0005829 cytosol C
IDA
SpoSPCC1450.13c
GO:0009507 chloroplast C
IDA
AthAt2g20690
GO:0004746 riboflavin synthase activity F
IDA
AthAt2g20690
SceS000000460
SpoSPCC1450.13c
ISS
SceS000000460
GO:0005488 binding F
ISS
AthAt2g20690
GO:0006082 organic acid metabolic process P
RCA
SceS000000460
GO:0006519 cellular amino acid and derivative metabolic
process
P
RCA
SceS000000460
GO:0006725 cellular aromatic compound metabolic
process
P
RCA
SceS000000460
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000000460
GO:0009231 riboflavin biosynthetic process P
IDA
AthAt2g20690
SpoSPCC1450.13c
IMP
SceS000000460
GO:0009636 response to toxin P
RCA
SceS000000460
GO:0033554 cellular response to stress P
IEP
SpoSPCC1450.13c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5437

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPCC1450.13c GI:19075812 Q9Y7P0
Saccharomyces cerevisiae (Sce) RIB5
(S000000460)
GI:6319733 P38145
Kluyveromyces lactis (Kla) KLLA0D15895g GI:50307561
Eremothecium gossypii (Ego) AGOS_AGR241W GI:45201337
Magnaporthe grisea (Mgr) MGG_04586 GI:39945208
Neurospora crassa (Ncr) NCU07456.1 GI:32414525
Arabidopsis thaliana (Ath) AT2G20690 GI:18399445
Oryza sativa (Osa) Os12g0541000 GI:115488930


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005625 soluble fraction C
IDA
SceS000000460
GO:0005634 nucleus C
IDA
SpoSPCC1450.13c
GO:0005829 cytosol C
IDA
SpoSPCC1450.13c
GO:0009507 chloroplast C
IDA
AthAt2g20690
GO:0004746 riboflavin synthase activity F
IDA
AthAt2g20690
SceS000000460
SpoSPCC1450.13c
ISS
SceS000000460
GO:0005488 binding F
ISS
AthAt2g20690
GO:0006082 organic acid metabolic process P
RCA
SceS000000460
GO:0006519 cellular amino acid and derivative metabolic
process
P
RCA
SceS000000460
GO:0006725 cellular aromatic compound metabolic
process
P
RCA
SceS000000460
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000000460
GO:0009231 riboflavin biosynthetic process P
IDA
AthAt2g20690
SpoSPCC1450.13c
IMP
SceS000000460
GO:0009636 response to toxin P
RCA
SceS000000460
GO:0033554 cellular response to stress P
IEP
SpoSPCC1450.13c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3475

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago4552 AGR241W
Arabidopsis thaliana (Ath) ath8941 At2g20690.1
Candida glabrata (Cgl) cgl885 CAGL0D05302g
Cryptococcus neoformans (Cne) cne5668 179.m00530
Debaryomyces hansenii (Dha) dha2980 DEHA0D15202g
Escherichia coli (Eco) eco1622 16129620
Kluyveromyces lactis (Kla) kla2759 KLLA0D15895g
Neurospora crassa (Ncr) ncr7258 NCU07456.2
Oryza sativa (Osa) osa31493 4424.m00156
Saccharomyces cerevisiae (Sce) sce533 YBR256C
(S000000460)
Schizosaccharomyces pombe (Spo) spo4115 SPCC1450.13c Q9Y7P0
Yarrowia lipolytica (Yli) yli1770 YALI0C01111g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005625 soluble fraction C
IDA
SceS000000460
GO:0005634 nucleus C
IDA
SpoSPCC1450.13c
GO:0005829 cytosol C
IDA
SpoSPCC1450.13c
GO:0009507 chloroplast C
IDA
AthAt2g20690
GO:0004746 riboflavin synthase activity F
IDA
AthAt2g20690
SceS000000460
SpoSPCC1450.13c
ISS
SceS000000460
GO:0005488 binding F
ISS
AthAt2g20690
GO:0006082 organic acid metabolic process P
RCA
SceS000000460
GO:0006519 cellular amino acid and derivative metabolic
process
P
RCA
SceS000000460
GO:0006725 cellular aromatic compound metabolic
process
P
RCA
SceS000000460
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000000460
GO:0009231 riboflavin biosynthetic process P
IDA
AthAt2g20690
SpoSPCC1450.13c
IMP
SceS000000460
GO:0009636 response to toxin P
RCA
SceS000000460
GO:0033554 cellular response to stress P
IEP
SpoSPCC1450.13c

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPCC1450.13c
(Q9Y7P0)
YBR256C
(S000000460)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005625 soluble fraction C
IDA
SceS000000460
GO:0005634 nucleus C
IDA
SpoSPCC1450.13c
GO:0005829 cytosol C
IDA
SpoSPCC1450.13c
GO:0004746 riboflavin synthase activity F
IDA
SceS000000460
SpoSPCC1450.13c
ISS
SceS000000460
GO:0006082 organic acid metabolic process P
RCA
SceS000000460
GO:0006519 cellular amino acid and derivative metabolic
process
P
RCA
SceS000000460
GO:0006725 cellular aromatic compound metabolic
process
P
RCA
SceS000000460
GO:0006807 nitrogen compound metabolic process P
RCA
SceS000000460
GO:0009231 riboflavin biosynthetic process P
IDA
SpoSPCC1450.13c
IMP
SceS000000460
GO:0009636 response to toxin P
RCA
SceS000000460
GO:0033554 cellular response to stress P
IEP
SpoSPCC1450.13c

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GO info in one table:

s.khadayate@ucl.ac.uk