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Search term: YBR257W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name POP4
SGD link S000000461
Alternative ID YBR257W
Description Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends; binds to the RPR1 RNA subunit in RNase P
Synonyms YBR257W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4046 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNase MRP and P, subunit POP4/p29

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g43190 GI:15224240
Caenorhabditis elegans (Cel) CE18505
(WBGene00007603)		 GI:17505595 Q9XVT1
Drosophila melanogaster (Dme) 7295174 GI:7295174 Q9VSC6
Homo sapiens (Hsa) Hs5729986
(POP4)		 GI:5729986 O95707
Saccharomyces cerevisiae (Sce) YBR257w
(S000000461)		 GI:6319734 P38336
Schizosaccharomyces pombe (Spo) SPBC1703.01c GI:19112988 Q9P7W9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000172 ribonuclease MRP complex C
IDA
SceS000000461
ISS
SpoSPBC1703.01c
GO:0005655 nucleolar ribonuclease P complex C
IDA
SceS000000461
ISS
SpoSPBC1703.01c
GO:0005730 nucleolus C
IDA
SpoSPBC1703.01c
GO:0000171 ribonuclease MRP activity F
IDA
SceS000000461
IMP
SceS000000461
ISS
SpoSPBC1703.01c
GO:0004526 ribonuclease P activity F
IDA
SceS000000461
IMP
SceS000000461
ISS
AthAt2g43190
SpoSPBC1703.01c
GO:0005515 protein binding F
IPI
HsaPOP4
GO:0042802 identical protein binding F
IPI
HsaPOP4
GO:0000003 reproduction P
IMP
CelWBGene00007603
GO:0006364 rRNA processing P
IMP
SceS000000461
ISS
SpoSPBC1703.01c
TAS
SceS000000461
GO:0006379 mRNA cleavage P
IPI
SceS000000461
GO:0006399 tRNA metabolic process P
RCA
SceS000000461
GO:0008033 tRNA processing P
IMP
SceS000000461
ISS
SpoSPBC1703.01c
TAS
SceS000000461
GO:0016074 snoRNA metabolic process P
RCA
SceS000000461
GO:0034965 intronic box C/D snoRNA processing P
IDA
SceS000000461
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007603
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00007603

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38467

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) POP4
(S000000461)		 GI:6319734 P38336
Kluyveromyces lactis (Kla) KLLA0F02211g GI:50310321
Eremothecium gossypii (Ego) AGOS_AFR610W GI:45199128


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000172 ribonuclease MRP complex C
IDA
SceS000000461
GO:0005655 nucleolar ribonuclease P complex C
IDA
SceS000000461
GO:0000171 ribonuclease MRP activity F
IDA
SceS000000461
IMP
SceS000000461
GO:0004526 ribonuclease P activity F
IDA
SceS000000461
IMP
SceS000000461
GO:0006364 rRNA processing P
IMP
SceS000000461
TAS
SceS000000461
GO:0006379 mRNA cleavage P
IPI
SceS000000461
GO:0006399 tRNA metabolic process P
RCA
SceS000000461
GO:0008033 tRNA processing P
IMP
SceS000000461
TAS
SceS000000461
GO:0016074 snoRNA metabolic process P
RCA
SceS000000461
GO:0034965 intronic box C/D snoRNA processing P
IDA
SceS000000461

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2496

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8846 ENSANGP00000014077
Ashbya gossypii (Ago) ago3802 AFR610W
Arabidopsis thaliana (Ath) ath11509 At2g43190.1
Arabidopsis thaliana (Ath) ath11510 At2g43190.2
Arabidopsis thaliana (Ath) ath11511 At2g43190.3
Caenorhabditis elegans (Cel) cel2046 C15C6.4
(CE18505;
WBGene00007603)
Candida glabrata (Cgl) cgl2915 CAGL0I09152g
Dictyostelium discoideum (Ddi) ddi8066 DDB0187984
Debaryomyces hansenii (Dha) dha278 DEHA0A06237g
Drosophila melanogaster (Dme) dme8470 CG8038-PA
(FBgn0035831)
Danio rerio (Dre) dre21856 ENSDARP00000024490
(zgc:110597)		 Q503H3
Gallus gallus (Gga) gga4627 ENSGALP00000007087
Gallus gallus (Gga) gga4626 ENSGALP00000007088
Homo sapiens (Hsa) hsa16097 ENSP00000221770
(POP4)		 O95707
Kluyveromyces lactis (Kla) kla4179 KLLA0F02211g
Mus musculus (Mmu) mmu23734 ENSMUSP00000032585
(MGI:1913411)		 Q9CR08
Neurospora crassa (Ncr) ncr8441 NCU08660.2
Oryza sativa (Osa) osa35523 4731.m00203
Oryza sativa (Osa) osa57248 6219.m00186
Plasmodium falciparum (Pfa) pfa3165 PFF1355w
Rattus norvegicus (Rno) rno1622 ENSRNOP00000020474
(RGD:1305955)		 Q5M882
Saccharomyces cerevisiae (Sce) sce534 YBR257W
(S000000461)
Schizosaccharomyces pombe (Spo) spo3105 SPBC1703.01c Q9P7W9
Yarrowia lipolytica (Yli) yli1872 YALI0C03784g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000172 ribonuclease MRP complex C
IDA
SceS000000461
ISS
SpoSPBC1703.01c
GO:0005575 cellular_component C
ND
MmuMGI:1913411
GO:0005655 nucleolar ribonuclease P complex C
IDA
SceS000000461
ISS
SpoSPBC1703.01c
GO:0005730 nucleolus C
IDA
SpoSPBC1703.01c
GO:0030677 ribonuclease P complex C
ISS
DmeFBgn0035831
GO:0000171 ribonuclease MRP activity F
IDA
SceS000000461
IMP
SceS000000461
ISS
SpoSPBC1703.01c
GO:0003674 molecular_function F
ND
MmuMGI:1913411
GO:0004526 ribonuclease P activity F
IDA
SceS000000461
IMP
SceS000000461
ISS
AthAt2g43190
DmeFBgn0035831
SpoSPBC1703.01c
GO:0000003 reproduction P
IMP
CelWBGene00007603
GO:0006364 rRNA processing P
IMP
SceS000000461
ISS
SpoSPBC1703.01c
TAS
SceS000000461
GO:0006379 mRNA cleavage P
IPI
SceS000000461
GO:0006399 tRNA metabolic process P
RCA
SceS000000461
GO:0008033 tRNA processing P
IMP
SceS000000461
ISS
SpoSPBC1703.01c
TAS
SceS000000461
GO:0008150 biological_process P
ND
MmuMGI:1913411
GO:0016074 snoRNA metabolic process P
RCA
SceS000000461
GO:0034965 intronic box C/D snoRNA processing P
IDA
SceS000000461
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007603
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00007603

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1703.01c
(Q9P7W9)		 YBR257W
(S000000461)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000172 ribonuclease MRP complex C
IDA
SceS000000461
ISS
SpoSPBC1703.01c
GO:0005655 nucleolar ribonuclease P complex C
IDA
SceS000000461
ISS
SpoSPBC1703.01c
GO:0005730 nucleolus C
IDA
SpoSPBC1703.01c
GO:0000171 ribonuclease MRP activity F
IDA
SceS000000461
IMP
SceS000000461
ISS
SpoSPBC1703.01c
GO:0004526 ribonuclease P activity F
IDA
SceS000000461
IMP
SceS000000461
ISS
SpoSPBC1703.01c
GO:0006364 rRNA processing P
IMP
SceS000000461
ISS
SpoSPBC1703.01c
TAS
SceS000000461
GO:0006379 mRNA cleavage P
IPI
SceS000000461
GO:0006399 tRNA metabolic process P
RCA
SceS000000461
GO:0008033 tRNA processing P
IMP
SceS000000461
ISS
SpoSPBC1703.01c
TAS
SceS000000461
GO:0016074 snoRNA metabolic process P
RCA
SceS000000461
GO:0034965 intronic box C/D snoRNA processing P
IDA
SceS000000461

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