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Search term: YBR260C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RGD1
SGD link S000000464
Alternative ID YBR260C
Description GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, possibly involved in control of actin cytoskeleton organization
Synonyms YBR260C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1450 -CDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Predicted Rho GTPase-activating protein

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE00918
(WBGene00008006)		 GI:17552554 P46941
Drosophila melanogaster (Dme) 7293421 GI:7293421
Homo sapiens (Hsa) Hs14210510 GI:14210510
Homo sapiens (Hsa) Hs19923546 GI:19923546
Homo sapiens (Hsa) Hs20558968 GI:20558968
Homo sapiens (Hsa) Hs8922106 GI:8922106
Saccharomyces cerevisiae (Sce) YBR260c
(S000000464)		 GI:6319737 P38339
Saccharomyces cerevisiae (Sce) YER155c
(S000000957)		 GI:6321003 P39960
Schizosaccharomyces pombe (Spo) SPBC23G7.08c GI:19112658 O94466


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000131 incipient cellular bud site C
IDA
SceS000000957
GO:0005737 cytoplasm C
IDA
SceS000000957
GO:0005739 mitochondrion C
IDA
SceS000000957
GO:0005829 cytosol C
IDA
SpoSPBC23G7.08c
GO:0005886 plasma membrane C
IDA
SceS000000957
GO:0005933 cellular bud C
IDA
SceS000000464
RCA
SceS000000957
GO:0005934 cellular bud tip C
IDA
SceS000000957
GO:0005935 cellular bud neck C
RCA
SceS000000957
GO:0005938 cell cortex C
IDA
SceS000000957
GO:0030427 site of polarized growth C
RCA
SceS000000957
GO:0030479 actin cortical patch C
IDA
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0032153 cell division site C
IDA
SpoSPBC23G7.08c
GO:0043332 mating projection tip C
IDA
SceS000000464
S000000957
GO:0005085 guanyl-nucleotide exchange factor
activity		 F
RCA
SceS000000957
GO:0005088 Ras guanyl-nucleotide exchange factor
activity		 F
RCA
SceS000000957
GO:0005100 Rho GTPase activator activity F
IDA
SceS000000957
S000000464
IGI
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0070273 phosphatidylinositol-4-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0080025 phosphatidylinositol-3,5-bisphosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0000003 reproduction P
RCA
SceS000000464
S000000957
GO:0000226 microtubule cytoskeleton organization P
IGI
SceS000000957
GO:0001101 response to acid P
IMP
SceS000000464
GO:0007047 cellular cell wall organization P
RCA
SceS000000464
S000000957
GO:0007117 budding cell bud growth P
TAS
SceS000000957
GO:0007231 osmosensory signaling pathway P
IGI
SceS000000464
GO:0007264 small GTPase mediated signal transduction P
RCA
SceS000000464
GO:0009966 regulation of signal transduction P
RCA
SceS000000464
GO:0019953 sexual reproduction P
RCA
SceS000000957
GO:0030010 establishment of cell polarity P
TAS
SceS000000957
GO:0030036 actin cytoskeleton organization P
IGI
SceS000000957
ISS
SpoSPBC23G7.08c
TAS
SceS000000957
GO:0031505 fungal-type cell wall organization P
TAS
SceS000000957
GO:0032319 regulation of Rho GTPase activity P
ISS
SpoSPBC23G7.08c
GO:0035024 negative regulation of Rho protein signal
transduction		 P
IGI
SceS000000957
IMP
SceS000000957
GO:0051049 regulation of transport P
RCA
SceS000000957
GO:0051301 cell division P
RCA
SceS000000957
S000000464

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40829

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) rga7
(SPBC23G7.08c)		 GI:19112658 O94466
Saccharomyces cerevisiae (Sce) RGD1
(S000000464)		 GI:6319737 P38339
Kluyveromyces lactis (Kla) KLLA0F02123g GI:50310313
Eremothecium gossypii (Ego) AGOS_AFR616W GI:45199134
Magnaporthe grisea (Mgr) MGG_03048 GI:145609704
Neurospora crassa (Ncr) NCU00553.1 GI:32408503


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPBC23G7.08c
GO:0005933 cellular bud C
IDA
SceS000000464
GO:0030479 actin cortical patch C
IDA
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0032153 cell division site C
IDA
SpoSPBC23G7.08c
GO:0043332 mating projection tip C
IDA
SceS000000464
GO:0005100 Rho GTPase activator activity F
IDA
SceS000000464
IGI
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0070273 phosphatidylinositol-4-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0080025 phosphatidylinositol-3,5-bisphosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0000003 reproduction P
RCA
SceS000000464
GO:0001101 response to acid P
IMP
SceS000000464
GO:0007047 cellular cell wall organization P
RCA
SceS000000464
GO:0007231 osmosensory signaling pathway P
IGI
SceS000000464
GO:0007264 small GTPase mediated signal transduction P
RCA
SceS000000464
GO:0009966 regulation of signal transduction P
RCA
SceS000000464
GO:0030036 actin cytoskeleton organization P
ISS
SpoSPBC23G7.08c
GO:0032319 regulation of Rho GTPase activity P
ISS
SpoSPBC23G7.08c
GO:0051301 cell division P
RCA
SceS000000464

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_6371

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3808 AFR616W
Candida glabrata (Cgl) cgl2918 CAGL0I09218g
Cryptococcus neoformans (Cne) cne1352 180.m00299
Debaryomyces hansenii (Dha) dha1838 DEHA0C09262g
Danio rerio (Dre) dre10869 ENSDARP00000031603
(LOC568949)
Danio rerio (Dre) dre25281 ENSDARP00000049920
Danio rerio (Dre) dre3107 ENSDARP00000050139
Takifugu rubripes (Fru) fru18865 SINFRUP00000129417
Takifugu rubripes (Fru) fru13413 SINFRUP00000145589
Takifugu rubripes (Fru) fru30778 SINFRUP00000150630
Kluyveromyces lactis (Kla) kla4175 KLLA0F02123g
Mus musculus (Mmu) mmu2325 ENSMUSP00000009825
Neurospora crassa (Ncr) ncr537 NCU00553.2
Saccharomyces cerevisiae (Sce) sce537 YBR260C
(S000000464)
Schizosaccharomyces pombe (Spo) spo3238 SPBC23G7.08c O94466
Yarrowia lipolytica (Yli) yli82 YALI0A02222g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPBC23G7.08c
GO:0005933 cellular bud C
IDA
SceS000000464
GO:0030479 actin cortical patch C
IDA
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0032153 cell division site C
IDA
SpoSPBC23G7.08c
GO:0043332 mating projection tip C
IDA
SceS000000464
GO:0005100 Rho GTPase activator activity F
IDA
SceS000000464
IGI
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0070273 phosphatidylinositol-4-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0080025 phosphatidylinositol-3,5-bisphosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0000003 reproduction P
RCA
SceS000000464
GO:0001101 response to acid P
IMP
SceS000000464
GO:0007047 cellular cell wall organization P
RCA
SceS000000464
GO:0007231 osmosensory signaling pathway P
IGI
SceS000000464
GO:0007264 small GTPase mediated signal transduction P
RCA
SceS000000464
GO:0009966 regulation of signal transduction P
RCA
SceS000000464
GO:0030036 actin cytoskeleton organization P
ISS
SpoSPBC23G7.08c
GO:0032319 regulation of Rho GTPase activity P
ISS
SpoSPBC23G7.08c
GO:0051301 cell division P
RCA
SceS000000464

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC23G7.08c
(O94466)		 YBR260C
(S000000464)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005829 cytosol C
IDA
SpoSPBC23G7.08c
GO:0005933 cellular bud C
IDA
SceS000000464
GO:0030479 actin cortical patch C
IDA
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0032153 cell division site C
IDA
SpoSPBC23G7.08c
GO:0043332 mating projection tip C
IDA
SceS000000464
GO:0005100 Rho GTPase activator activity F
IDA
SceS000000464
IGI
SceS000000464
ISS
SpoSPBC23G7.08c
GO:0010314 phosphatidylinositol-5-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0070273 phosphatidylinositol-4-phosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0080025 phosphatidylinositol-3,5-bisphosphate
binding		 F
IDA
SceS000000464
IMP
SceS000000464
GO:0000003 reproduction P
RCA
SceS000000464
GO:0001101 response to acid P
IMP
SceS000000464
GO:0007047 cellular cell wall organization P
RCA
SceS000000464
GO:0007231 osmosensory signaling pathway P
IGI
SceS000000464
GO:0007264 small GTPase mediated signal transduction P
RCA
SceS000000464
GO:0009966 regulation of signal transduction P
RCA
SceS000000464
GO:0030036 actin cytoskeleton organization P
ISS
SpoSPBC23G7.08c
GO:0032319 regulation of Rho GTPase activity P
ISS
SpoSPBC23G7.08c
GO:0051301 cell division P
RCA
SceS000000464

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk