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Search term: YCL001W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RER1
SGD link S000000507
Alternative ID YCL001W
Description Protein involved in retention of membrane proteins, including Sec12p, in the ER; localized to Golgi; functions as a retrieval receptor in returning membrane proteins to the ER
Synonyms YCL001W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1688 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Golgi proteins involved in ER retention (RER)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g18240_1 GI:15224136
Arabidopsis thaliana (Ath) At2g21600 GI:15226596
Arabidopsis thaliana (Ath) At2g23310 GI:7488292
Arabidopsis thaliana (Ath) At4g39220 GI:15234975
Caenorhabditis elegans (Cel) CE03349
(WBGene00009783)
GI:17534139 P52879
Drosophila melanogaster (Dme) 7301302 GI:7301302 B7Z0Q3
Homo sapiens (Hsa) Hs19923787 GI:19923787
Saccharomyces cerevisiae (Sce) YCL001w
(S000000507)
GI:6319844 P25560
Schizosaccharomyces pombe (Spo) SPAC22E12.05c GI:19115743 Q10358
Encephalitozoon cuniculi (Ecu) ECU08g0700 GI:19173396 Q8SRC9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISS
SpoSPAC22E12.05c
GO:0005783 endoplasmic reticulum C
IDA
AthAt2g21600
GO:0005794 Golgi apparatus C
IDA
AthAt4g39220
At2g21600
SpoSPAC22E12.05c
GO:0005801 cis-Golgi network C
TAS
AthAt2g21600
GO:0016021 integral to membrane C
ISS
AthAt2g23310
At2g18240
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0030137 COPI-coated vesicle C
IDA
SceS000000507
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0003674 molecular_function F
ND
AthAt2g23310
At2g21600
At2g18240
At4g39220
SceS000000507
SpoSPAC22E12.05c
GO:0006621 protein retention in ER lumen P
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006886 intracellular protein transport P
IC
SpoSPAC22E12.05c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER
P
IDA
SceS000000507
IMP
AthAt4g39220
At2g21600
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0008150 biological_process P
ND
AthAt2g18240
GO:0045185 maintenance of protein location P
IGI
AthAt2g23310

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5468

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RER1 GI:116812591
Mus musculus (Mmu) Rer1
(MGI:1915080)
GI:13385882 Q9CQU3
Rattus norvegicus (Rno) Rer1 GI:84781666
Gallus gallus (Gga) RER1 GI:57529427
Drosophila melanogaster (Dme) CG11857
(FBgn0039303)
GI:21356291
Anopheles gambiae (Aga) AgaP_AGAP011996 GI:158300679
Caenorhabditis elegans (Cel) rer-1
(CE03349;
WBGene00009783)
GI:17534139 P52879
Schizosaccharomyces pombe (Spo) rer1
(SPAC22E12.05c)
GI:19115743 Q10358
Saccharomyces cerevisiae (Sce) RER1
(S000000507)
GI:6319844 P25560
Kluyveromyces lactis (Kla) KLLA0A08624g GI:50302883
Eremothecium gossypii (Ego) AGOS_AAL002W GI:45184822
Magnaporthe grisea (Mgr) MGG_06273 GI:39976741
Neurospora crassa (Ncr) NCU06447.1 GI:32411643
Arabidopsis thaliana (Ath) ATRER1A GI:15234975
Arabidopsis thaliana (Ath) ATRER1B GI:15226596
Oryza sativa (Osa) Os01g0106200 GI:115434032
Oryza sativa (Osa) Os06g0708300 GI:115469868
Plasmodium falciparum (Pfa) PFI0150c GI:124506615


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISS
SpoSPAC22E12.05c
GO:0005575 cellular_component C
ND
MmuMGI:1915080
GO:0005783 endoplasmic reticulum C
IDA
AthATRER1B
GO:0005794 Golgi apparatus C
IDA
AthATRER1A
ATRER1B
SpoSPAC22E12.05c
GO:0005801 cis-Golgi network C
TAS
AthATRER1B
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0030137 COPI-coated vesicle C
IDA
SceS000000507
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0030173 integral to Golgi membrane C
IDA
HsaRER1
GO:0003674 molecular_function F
ND
AthATRER1A
ATRER1B
HsaRER1
MmuMGI:1915080
SceS000000507
SpoSPAC22E12.05c
GO:0006621 protein retention in ER lumen P
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006886 intracellular protein transport P
IC
SpoSPAC22E12.05c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER
P
IDA
HsaRER1
SceS000000507
IMP
AthATRER1A
ATRER1B
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0008150 biological_process P
ND
MmuMGI:1915080
GO:0016192 vesicle-mediated transport P
ISS
DmeFBgn0039303

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2227

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9156 ENSANGP00000015665
Ashbya gossypii (Ago) ago185 AAL002W
Arabidopsis thaliana (Ath) ath9055 At2g21600.1
Arabidopsis thaliana (Ath) ath9240 At2g23310.1
Arabidopsis thaliana (Ath) ath9241 At2g23310.2
Arabidopsis thaliana (Ath) ath22124 At4g39220.1
Caenorhabditis elegans (Cel) cel9347 F46C5.8
(CE03349;
WBGene00009783)
Candida glabrata (Cgl) cgl408 CAGL0B04697g
Cryptococcus neoformans (Cne) cne2077 181.m08063
Dictyostelium discoideum (Ddi) ddi10860 DDB0184462
Debaryomyces hansenii (Dha) dha6242 DEHA0G12221g
Drosophila melanogaster (Dme) dme14405 CG11857-PA
(FBgn0039303)
Danio rerio (Dre) dre23056 ENSDARP00000007832
(rer1)
Q6PE45
Encephalitozoon cuniculi (Ecu) ecu227 19173396
Takifugu rubripes (Fru) fru9394 SINFRUP00000146025
Homo sapiens (Hsa) hsa98 ENSP00000302088
(RER1)
Q9P0H9
Kluyveromyces lactis (Kla) kla376 KLLA0A08624g
Mus musculus (Mmu) mmu19549 ENSMUSP00000030914
(MGI:1915080)
Q9CQU3
Neurospora crassa (Ncr) ncr6266 NCU06447.2
Oryza sativa (Osa) osa2474 1946.m00184
Oryza sativa (Osa) osa2790 1957.m00196
Oryza sativa (Osa) osa2791 1957.m00197
Oryza sativa (Osa) osa38334 5057.m00177
Plasmodium falciparum (Pfa) pfa4497 PFI0150c
Rattus norvegicus (Rno) rno24538 ENSRNOP00000019620
(RGD:1306324)
Q498C8
Saccharomyces cerevisiae (Sce) sce582 YCL001W
(S000000507)
Schizosaccharomyces pombe (Spo) spo2936 SPAC22E12.05c Q10358
Yarrowia lipolytica (Yli) yli1040 YALI0B07425g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISS
SpoSPAC22E12.05c
GO:0005575 cellular_component C
ND
MmuMGI:1915080
GO:0005783 endoplasmic reticulum C
IDA
AthAt2g21600
GO:0005794 Golgi apparatus C
IDA
AthAt4g39220
At2g21600
SpoSPAC22E12.05c
GO:0005801 cis-Golgi network C
TAS
AthAt2g21600
GO:0016021 integral to membrane C
ISS
AthAt2g23310
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0030137 COPI-coated vesicle C
IDA
SceS000000507
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0003674 molecular_function F
ND
AthAt2g23310
At2g21600
At4g39220
MmuMGI:1915080
SceS000000507
SpoSPAC22E12.05c
GO:0006621 protein retention in ER lumen P
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006886 intracellular protein transport P
IC
SpoSPAC22E12.05c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER
P
IDA
SceS000000507
IMP
AthAt4g39220
At2g21600
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0008150 biological_process P
ND
MmuMGI:1915080
GO:0016192 vesicle-mediated transport P
ISS
DmeFBgn0039303
GO:0045185 maintenance of protein location P
IGI
AthAt2g23310

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC22E12.05c
(Q10358)
YCL001W
(S000000507)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISS
SpoSPAC22E12.05c
GO:0005794 Golgi apparatus C
IDA
SpoSPAC22E12.05c
GO:0030134 ER to Golgi transport vesicle C
IDA
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0030137 COPI-coated vesicle C
IDA
SceS000000507
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0003674 molecular_function F
ND
SceS000000507
SpoSPAC22E12.05c
GO:0006621 protein retention in ER lumen P
IMP
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006886 intracellular protein transport P
IC
SpoSPAC22E12.05c
GO:0006888 ER to Golgi vesicle-mediated transport P
IPI
SceS000000507
ISS
SpoSPAC22E12.05c
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER
P
IDA
SceS000000507
IMP
SceS000000507
ISS
SpoSPAC22E12.05c

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GO info in one table:

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