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Search term: YCL054W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SPB1
SGD link S000000559
Alternative ID YCL054W
Description AdoMet-dependent methyltransferase involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants
Synonyms YCL054W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1098 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGPOORLY CHARACTERIZED Putative SAM-dependent rRNA methyltransferase SPB1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g25730 GI:15235966
Arabidopsis thaliana (Ath) At5g13830 GI:15240727
Caenorhabditis elegans (Cel) CE23795
(WBGene00019168)
GI:17553860 Q9N5N9
Caenorhabditis elegans (Cel) CE23796 GI:17553858
Drosophila melanogaster (Dme) 7293173
(FBgn0030720)
GI:18859957
Homo sapiens (Hsa) Hs17017991 GI:17017991
Saccharomyces cerevisiae (Sce) YCL054w
(S000000559)
GI:6319796 P25582
Schizosaccharomyces pombe (Spo) SPAC1687.11 GI:19114041 O42832
Encephalitozoon cuniculi (Ecu) ECU07g1340 GI:19074557 Q8SRI0
Arabidopsis thaliana (Ath) At4g25730 GI:15235966
Arabidopsis thaliana (Ath) At5g13830 GI:15240727
Caenorhabditis elegans (Cel) CE23795
(WBGene00019168)
GI:17553860 Q9N5N9
Caenorhabditis elegans (Cel) CE23796 GI:17553858
Drosophila melanogaster (Dme) 7293173
(FBgn0030720)
GI:18859957
Homo sapiens (Hsa) Hs17017991 GI:17017991
Saccharomyces cerevisiae (Sce) YCL054w
(S000000559)
GI:6319796 P25582
Schizosaccharomyces pombe (Spo) SPAC1687.11 GI:19114041 O42832
Encephalitozoon cuniculi (Ecu) ECU07g1340 GI:19074557 Q8SRI0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g13830
GO:0005634 nucleus C
IDA
SceS000000559
SpoSPAC1687.11
ISS
SpoSPAC1687.11
GO:0005730 nucleolus C
IDA
SceS000000559
ISS
DmeFBgn0030720
SpoSPAC1687.11
GO:0005816 spindle pole body C
IDA
SpoSPAC1687.11
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000559
GO:0008168 methyltransferase activity F
ISS
AthAt4g25730
At5g13830
GO:0008649 rRNA methyltransferase activity F
ISS
DmeFBgn0030720
SpoSPAC1687.11
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase
activity
F
IGI
SceS000000559
ISS
SpoSPAC1687.11
GO:0016435 rRNA (guanine) methyltransferase
activity
F
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000003 reproduction P
IMP
CelWBGene00019168
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0002119 nematode larval development P
IMP
CelWBGene00019168
GO:0006364 rRNA processing P
ISS
DmeFBgn0030720
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00019168
GO:0009451 RNA modification P
RCA
SceS000000559
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00019168
GO:0031167 rRNA methylation P
IDA
SceS000000559
IGI
SceS000000559
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0040007 growth P
IMP
CelWBGene00019168
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00019168
GO:0040039 inductive cell migration P
IMP
CelWBGene00019168

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5451

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) FTSJ3 GI:194097365
Canis familiaris (Cfa) FTSJ3 GI:73965375
Mus musculus (Mmu) Ftsj3
(MGI:1860295)
GI:13384672 Q9DBE9
Rattus norvegicus (Rno) Ftsj3
(RGD:1307110)
GI:58865606
Gallus gallus (Gga) RCJMB04_10b6 GI:71896315
Drosophila melanogaster (Dme) CG8939
(FBgn0030720)
GI:18859957
Anopheles gambiae (Aga) AgaP_AGAP003002 GI:158290286
Caenorhabditis elegans (Cel) H06I04.3
(CE23795;
WBGene00019168)
GI:17553860 Q9N5N9
Schizosaccharomyces pombe (Spo) spb1
(SPAC1687.11)
GI:19114041 O42832
Saccharomyces cerevisiae (Sce) SPB1
(S000000559)
GI:6319796 P25582
Kluyveromyces lactis (Kla) KLLA0C00737g GI:50304545
Eremothecium gossypii (Ego) AGOS_AFR734C GI:45199253
Magnaporthe grisea (Mgr) MGG_08140 GI:39946040
Neurospora crassa (Ncr) NCU03669.1 GI:32404716
Arabidopsis thaliana (Ath) AT4G25730 GI:22328933
Oryza sativa (Osa) Os05g0567400 GI:115465501
Plasmodium falciparum (Pfa) PF13_0286 GI:124513798


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1860295
GO:0005634 nucleus C
IDA
SceS000000559
SpoSPAC1687.11
ISS
SpoSPAC1687.11
GO:0005730 nucleolus C
IDA
SceS000000559
ISS
DmeFBgn0030720
SpoSPAC1687.11
GO:0005816 spindle pole body C
IDA
SpoSPAC1687.11
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000559
GO:0003674 molecular_function F
ND
MmuMGI:1860295
GO:0008168 methyltransferase activity F
ISS
AthAt4g25730
GO:0008173 RNA methyltransferase activity F
ISS
PfaPF13_0286
GO:0008649 rRNA methyltransferase activity F
ISS
DmeFBgn0030720
SpoSPAC1687.11
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase
activity
F
IGI
SceS000000559
ISS
SpoSPAC1687.11
GO:0016435 rRNA (guanine) methyltransferase
activity
F
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000003 reproduction P
IMP
CelWBGene00019168
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0002119 nematode larval development P
IMP
CelWBGene00019168
GO:0006364 rRNA processing P
ISS
DmeFBgn0030720
PfaPF13_0286
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00019168
GO:0008150 biological_process P
ND
MmuMGI:1860295
GO:0009451 RNA modification P
RCA
SceS000000559
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00019168
GO:0031167 rRNA methylation P
IDA
SceS000000559
IGI
SceS000000559
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0040007 growth P
IMP
CelWBGene00019168
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00019168
GO:0040039 inductive cell migration P
IMP
CelWBGene00019168

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1622

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga5262 ENSANGP00000018213
Anopheles gambiae (Aga) aga5263 ENSANGP00000026202
Ashbya gossypii (Ago) ago3927 AFR734C
Arabidopsis thaliana (Ath) ath20559 At4g25730.1
Caenorhabditis elegans (Cel) cel11240 H06I04.3a
(CE23795;
WBGene00019168)
Caenorhabditis elegans (Cel) cel11241 H06I04.3b
(CE38200)
Candida glabrata (Cgl) cgl225 CAGL0B00484g
Cryptococcus neoformans (Cne) cne4807 186.m03681
Dictyostelium discoideum (Ddi) ddi7715 DDB0186272
Debaryomyces hansenii (Dha) dha4164 DEHA0E20845g
Drosophila melanogaster (Dme) dme18101 CG8939-PA
(FBgn0030720)
Danio rerio (Dre) dre1178 ENSDARP00000032598
Encephalitozoon cuniculi (Ecu) ecu1943 19074557
Takifugu rubripes (Fru) fru16562 SINFRUP00000148673
Takifugu rubripes (Fru) fru16563 SINFRUP00000166079
Takifugu rubripes (Fru) fru16564 SINFRUP00000171389
Gallus gallus (Gga) gga13686 ENSGALP00000000441
(RCJMB04_10b6)
Q5ZKM1
Homo sapiens (Hsa) hsa14155 ENSP00000337518
(FTSJ3)
Q8IY81
Homo sapiens (Hsa) hsa14156 ENSP00000353256
Kluyveromyces lactis (Kla) kla1226 KLLA0C00737g
Mus musculus (Mmu) mmu5005 ENSMUSP00000021048
(MGI:1860295)
Q9DBE9
Neurospora crassa (Ncr) ncr3560 NCU03669.2
Oryza sativa (Osa) osa34717 4755.m00217
Plasmodium falciparum (Pfa) pfa3803 PF13_0286
Rattus norvegicus (Rno) rno6304 ENSRNOP00000013295
(RGD:1307110)
Q5RJT2
Saccharomyces cerevisiae (Sce) sce634 YCL054W
(S000000559)
Schizosaccharomyces pombe (Spo) spo3476 SPAC1687.11 O42832
Yarrowia lipolytica (Yli) yli3095 YALI0D09251g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1860295
GO:0005634 nucleus C
IDA
SceS000000559
SpoSPAC1687.11
ISS
SpoSPAC1687.11
GO:0005730 nucleolus C
IDA
SceS000000559
ISS
DmeFBgn0030720
SpoSPAC1687.11
GO:0005816 spindle pole body C
IDA
SpoSPAC1687.11
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000559
GO:0003674 molecular_function F
ND
MmuMGI:1860295
GO:0008168 methyltransferase activity F
ISS
AthAt4g25730
GO:0008173 RNA methyltransferase activity F
ISS
PfaPF13_0286
GO:0008649 rRNA methyltransferase activity F
ISS
DmeFBgn0030720
SpoSPAC1687.11
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase
activity
F
IGI
SceS000000559
ISS
SpoSPAC1687.11
GO:0016435 rRNA (guanine) methyltransferase
activity
F
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000003 reproduction P
IMP
CelWBGene00019168
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0002119 nematode larval development P
IMP
CelWBGene00019168
GO:0006364 rRNA processing P
ISS
DmeFBgn0030720
PfaPF13_0286
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00019168
GO:0008150 biological_process P
ND
MmuMGI:1860295
GO:0009451 RNA modification P
RCA
SceS000000559
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00019168
GO:0031167 rRNA methylation P
IDA
SceS000000559
IGI
SceS000000559
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0040007 growth P
IMP
CelWBGene00019168
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00019168
GO:0040039 inductive cell migration P
IMP
CelWBGene00019168

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC1687.11
(O42832)
YCL054W
(S000000559)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000559
SpoSPAC1687.11
ISS
SpoSPAC1687.11
GO:0005730 nucleolus C
IDA
SceS000000559
ISS
SpoSPAC1687.11
GO:0005816 spindle pole body C
IDA
SpoSPAC1687.11
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000000559
GO:0008649 rRNA methyltransferase activity F
ISS
SpoSPAC1687.11
GO:0008650 rRNA (uridine-2'-O-)-methyltransferase
activity
F
IGI
SceS000000559
ISS
SpoSPAC1687.11
GO:0016435 rRNA (guanine) methyltransferase
activity
F
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000559
ISS
SpoSPAC1687.11
GO:0009451 RNA modification P
RCA
SceS000000559
GO:0031167 rRNA methylation P
IDA
SceS000000559
IGI
SceS000000559
IMP
SceS000000559
ISS
SpoSPAC1687.11

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s.khadayate@ucl.ac.uk