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Search term: YCL059C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name KRR1
SGD link S000000564
Alternative ID YCL059C
Description Essential nucleolar protein required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit
Synonyms YCL059C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2874 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGCELLULAR PROCESSES AND SIGNALING rRNA processing protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g08420 GI:15241622
Caenorhabditis elegans (Cel) CE07920
(WBGene00015461)
GI:17557644 O16311
Drosophila melanogaster (Dme) 7296147
(FBgn0020305)
GI:17137346
Homo sapiens (Hsa) Hs21359980 GI:19913489 Q13601
Homo sapiens (Hsa) HsM20127513 GI:20127513
Saccharomyces cerevisiae (Sce) YCL059c
(S000000564)
GI:6319791 P25586
Schizosaccharomyces pombe (Spo) SPBC25B2.05 GI:19112865 O74777
Encephalitozoon cuniculi (Ecu) ECU04g0510 GI:19074128 Q8SVW2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g08420
GO:0005634 nucleus C
IDA
SpoSPBC25B2.05
GO:0005654 nucleoplasm C
IDA
DmeFBgn0020305
GO:0005730 nucleolus C
IDA
DmeFBgn0020305
SceS000000564
SpoSPBC25B2.05
ISS
SpoSPBC25B2.05
GO:0030686 90S preribosome C
IDA
SceS000000564
GO:0032040 small-subunit processome C
IDA
SceS000000564
GO:0003674 molecular_function F
ND
SceS000000564
GO:0003723 RNA binding F
ISS
SpoSPBC25B2.05
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000564
GO:0002119 nematode larval development P
IMP
CelWBGene00015461
GO:0006364 rRNA processing P
IMP
DmeFBgn0020305
SceS000000564
SpoSPBC25B2.05
GO:0008150 biological_process P
ND
AthAt5g08420
GO:0010171 body morphogenesis P
IMP
CelWBGene00015461
GO:0018991 oviposition P
IMP
CelWBGene00015461
GO:0040007 growth P
IMP
CelWBGene00015461
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015461
GO:0042274 ribosomal small subunit biogenesis P
IMP
SceS000000564
GO:0051726 regulation of cell cycle P
IMP
SpoSPBC25B2.05

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5114

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) KRR1 GI:117676403
Canis familiaris (Cfa) KRR1 GI:73977410
Mus musculus (Mmu) Krr1
(MGI:1289274)
GI:30519935 Q3UIG9
Gallus gallus (Gga) KRR1 GI:71896953
Drosophila melanogaster (Dme) dbe
(FBgn0020305)
GI:17137346
Anopheles gambiae (Aga) AgaP_AGAP007912 GI:118789667
Caenorhabditis elegans (Cel) C05C8.2
(CE07920;
WBGene00015461)
GI:17557644 O16311
Schizosaccharomyces pombe (Spo) mis3
(SPBC25B2.05)
GI:19112865 O74777
Saccharomyces cerevisiae (Sce) KRR1
(S000000564)
GI:6319791 P25586
Kluyveromyces lactis (Kla) KLLA0C00506g GI:50304523
Eremothecium gossypii (Ego) AGOS_AFR744W GI:45199264
Magnaporthe grisea (Mgr) MGG_06049 GI:39976049
Neurospora crassa (Ncr) NCU07041.1 GI:32413695
Arabidopsis thaliana (Ath) AT5G08420 GI:15241622
Oryza sativa (Osa) Os10g0452800 GI:115482288
Plasmodium falciparum (Pfa) PFB0370c GI:124801035


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g08420
MmuMGI:1289274
GO:0005634 nucleus C
IDA
SpoSPBC25B2.05
GO:0005654 nucleoplasm C
IDA
DmeFBgn0020305
GO:0005730 nucleolus C
IDA
DmeFBgn0020305
SceS000000564
SpoSPBC25B2.05
ISS
SpoSPBC25B2.05
GO:0030686 90S preribosome C
IDA
SceS000000564
GO:0032040 small-subunit processome C
IDA
SceS000000564
GO:0003674 molecular_function F
ND
MmuMGI:1289274
SceS000000564
GO:0003723 RNA binding F
ISS
SpoSPBC25B2.05
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000564
GO:0002119 nematode larval development P
IMP
CelWBGene00015461
GO:0006364 rRNA processing P
IMP
DmeFBgn0020305
SceS000000564
SpoSPBC25B2.05
GO:0008150 biological_process P
ND
AthAt5g08420
MmuMGI:1289274
GO:0010171 body morphogenesis P
IMP
CelWBGene00015461
GO:0018991 oviposition P
IMP
CelWBGene00015461
GO:0040007 growth P
IMP
CelWBGene00015461
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015461
GO:0042274 ribosomal small subunit biogenesis P
IMP
SceS000000564
GO:0051726 regulation of cell cycle P
IMP
SpoSPBC25B2.05

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1415

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9857 ENSANGP00000010161
Ashbya gossypii (Ago) ago3938 AFR744W
Arabidopsis thaliana (Ath) ath23062 At5g08420.1
Caenorhabditis elegans (Cel) cel1111 C05C8.2
(CE07920;
WBGene00015461)
Candida glabrata (Cgl) cgl219 CAGL0B00352g
Cryptococcus neoformans (Cne) cne481 163.m06315
Dictyostelium discoideum (Ddi) ddi5913 DDB0204743
Debaryomyces hansenii (Dha) dha3891 DEHA0E14685g
Drosophila melanogaster (Dme) dme165 CG4258-PA
(FBgn0020305)
Danio rerio (Dre) dre28673 ENSDARP00000020316
(LOC553525)
Q32Q49
Encephalitozoon cuniculi (Ecu) ecu766 19074128
Takifugu rubripes (Fru) fru2447 SINFRUP00000159645
Takifugu rubripes (Fru) fru2448 SINFRUP00000167343
Gallus gallus (Gga) gga521 ENSGALP00000016606
(KRR1)
Q5ZKE0
Gallus gallus (Gga) gga522 ENSGALP00000016607
Homo sapiens (Hsa) hsa7900 ENSP00000229214
(KRR1)
Q13601
Homo sapiens (Hsa) hsa7901 ENSP00000314843
Kluyveromyces lactis (Kla) kla1215 KLLA0C00506g
Mus musculus (Mmu) mmu2840 ENSMUSP00000075313
(MGI:1289274)
Q8BGA5
Neurospora crassa (Ncr) ncr6851 NCU07041.2
Oryza sativa (Osa) osa17202 3154.m00137
Oryza sativa (Osa) osa30847 4367.m00160
Oryza sativa (Osa) osa36420 4839.m00227
Plasmodium falciparum (Pfa) pfa28 PFB0370c
Rattus norvegicus (Rno) rno26755 ENSRNOP00000005384
(RGD:1306183)
Saccharomyces cerevisiae (Sce) sce641 YCL059C
(S000000564)
Schizosaccharomyces pombe (Spo) spo964 SPBC25B2.05 O74777
Yarrowia lipolytica (Yli) yli6590 YALI0F30393g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g08420
MmuMGI:1289274
GO:0005634 nucleus C
IDA
SpoSPBC25B2.05
GO:0005654 nucleoplasm C
IDA
DmeFBgn0020305
GO:0005730 nucleolus C
IDA
DmeFBgn0020305
SceS000000564
SpoSPBC25B2.05
ISS
SpoSPBC25B2.05
GO:0030686 90S preribosome C
IDA
SceS000000564
GO:0032040 small-subunit processome C
IDA
SceS000000564
GO:0003674 molecular_function F
ND
MmuMGI:1289274
SceS000000564
GO:0003723 RNA binding F
ISS
SpoSPBC25B2.05
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000564
GO:0002119 nematode larval development P
IMP
CelWBGene00015461
GO:0006364 rRNA processing P
IMP
DmeFBgn0020305
SceS000000564
SpoSPBC25B2.05
GO:0008150 biological_process P
ND
AthAt5g08420
MmuMGI:1289274
GO:0010171 body morphogenesis P
IMP
CelWBGene00015461
GO:0018991 oviposition P
IMP
CelWBGene00015461
GO:0040007 growth P
IMP
CelWBGene00015461
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00015461
GO:0042274 ribosomal small subunit biogenesis P
IMP
SceS000000564
GO:0051726 regulation of cell cycle P
IMP
SpoSPBC25B2.05

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC25B2.05
(O74777)
YCL059C
(S000000564)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC25B2.05
GO:0005730 nucleolus C
IDA
SceS000000564
SpoSPBC25B2.05
ISS
SpoSPBC25B2.05
GO:0030686 90S preribosome C
IDA
SceS000000564
GO:0032040 small-subunit processome C
IDA
SceS000000564
GO:0003674 molecular_function F
ND
SceS000000564
GO:0003723 RNA binding F
ISS
SpoSPBC25B2.05
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000000564
GO:0006364 rRNA processing P
IMP
SceS000000564
SpoSPBC25B2.05
GO:0042274 ribosomal small subunit biogenesis P
IMP
SceS000000564
GO:0051726 regulation of cell cycle P
IMP
SpoSPBC25B2.05

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk