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Search term: YCR035C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRP43
SGD link S000000631
Alternative ID YCR035C
Description Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp43p (OIP2, EXOSC8)
Synonyms YCR035C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1613 A--HYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Exosomal 3'-5' exoribonuclease complex, subunit Rrp43

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g60080 GI:15218985
Homo sapiens (Hsa) Hs22051959 GI:16507948
Homo sapiens (Hsa) Hs20556446 GI:20556446
Saccharomyces cerevisiae (Sce) YCR035c
(S000000631)		 GI:10383796 P25359
Schizosaccharomyces pombe (Spo) SPBC17D1.03c GI:19113177 Q10205


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000000631
ISS
SpoSPBC17D1.03c
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000000631
ISS
SpoSPBC17D1.03c
GO:0005575 cellular_component C
ND
AthAt1g60080
GO:0005634 nucleus C
IDA
SpoSPBC17D1.03c
GO:0005654 nucleoplasm C
IDA
SceS000000631
GO:0005730 nucleolus C
IDA
SceS000000631
SpoSPBC17D1.03c
GO:0005737 cytoplasm C
IDA
SceS000000631
GO:0005829 cytosol C
IDA
SpoSPBC17D1.03c
GO:0000175 3'-5'-exoribonuclease activity F
ISS
AthAt1g60080
SpoSPBC17D1.03c
GO:0003674 molecular_function F
ND
SceS000000631
GO:0003723 RNA binding F
ISS
AthAt1g60080
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000000631
GO:0006364 rRNA processing P
ISS
SpoSPBC17D1.03c
GO:0006396 RNA processing P
ISS
AthAt1g60080
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000000631
GO:0043628 ncRNA 3'-end processing P
IC
SceS000000631
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000000631
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000000631
GO:0070651 nonfunctional rRNA decay P
IC
SceS000000631
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IMP
SceS000000631
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000000631
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IMP
SceS000000631
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000000631

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38527

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RRP43
(S000000631)		 GI:10383796 P25359
Kluyveromyces lactis (Kla) KLLA0C03520g GI:50304795


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000000631
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000000631
GO:0005654 nucleoplasm C
IDA
SceS000000631
GO:0005730 nucleolus C
IDA
SceS000000631
GO:0005737 cytoplasm C
IDA
SceS000000631
GO:0003674 molecular_function F
ND
SceS000000631
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000000631
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000000631
GO:0043628 ncRNA 3'-end processing P
IC
SceS000000631
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000000631
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000000631
GO:0070651 nonfunctional rRNA decay P
IC
SceS000000631
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IMP
SceS000000631
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000000631
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IMP
SceS000000631
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000000631

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17600

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3817 AFR625C
Candida glabrata (Cgl) cgl4437 CAGL0L08206g
Debaryomyces hansenii (Dha) dha6445 DEHA0G16698g
Kluyveromyces lactis (Kla) kla1352 KLLA0C03520g
Neurospora crassa (Ncr) ncr3061 NCU03159.2
Saccharomyces cerevisiae (Sce) sce693 YCR035C
(S000000631)
Yarrowia lipolytica (Yli) yli1358 YALI0B14905g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000000631
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000000631
GO:0005654 nucleoplasm C
IDA
SceS000000631
GO:0005730 nucleolus C
IDA
SceS000000631
GO:0005737 cytoplasm C
IDA
SceS000000631
GO:0003674 molecular_function F
ND
SceS000000631
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000000631
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000000631
GO:0043628 ncRNA 3'-end processing P
IC
SceS000000631
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000000631
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000000631
GO:0070651 nonfunctional rRNA decay P
IC
SceS000000631
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IMP
SceS000000631
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000000631
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IMP
SceS000000631
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000000631

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC17D1.03c
(Q10205)		 YCR035C
(S000000631)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000000631
ISS
SpoSPBC17D1.03c
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000000631
ISS
SpoSPBC17D1.03c
GO:0005634 nucleus C
IDA
SpoSPBC17D1.03c
GO:0005654 nucleoplasm C
IDA
SceS000000631
GO:0005730 nucleolus C
IDA
SceS000000631
SpoSPBC17D1.03c
GO:0005737 cytoplasm C
IDA
SceS000000631
GO:0005829 cytosol C
IDA
SpoSPBC17D1.03c
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC17D1.03c
GO:0003674 molecular_function F
ND
SceS000000631
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000000631
GO:0006364 rRNA processing P
ISS
SpoSPBC17D1.03c
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000000631
GO:0043628 ncRNA 3'-end processing P
IC
SceS000000631
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000000631
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000000631
GO:0070651 nonfunctional rRNA decay P
IC
SceS000000631
GO:0071035 nuclear polyadenylation-dependent rRNA catabolic
process		 P
IMP
SceS000000631
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000000631
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IMP
SceS000000631
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000000631

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Search for GO info:  

GO info in one table:

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