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Search term: YCR077C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PAT1
SGD link S000000673
Alternative ID YCR077C
Description Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; functionally linked to Pab1p
Synonyms YCR077C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4592 --DHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Drosophila melanogaster (Dme) 7300218 GI:7300218 Q9VEN9
Homo sapiens (Hsa) Hs18590634 GI:18590634
Saccharomyces cerevisiae (Sce) YCR077c
(S000000673)		 GI:10383807 P25644
Schizosaccharomyces pombe (Spo) SPBC19G7.10c GI:19112768 O42958


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0005737 cytoplasm C
IDA
SpoSPBC19G7.10c
GO:0005829 cytosol C
IDA
SpoSPBC19G7.10c
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000000673
GO:0003674 molecular_function F
ND
SceS000000673
SpoSPBC19G7.10c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA		 P
IMP
SceS000000673
IPI
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0006446 regulation of translational initiation P
IGI
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0007059 chromosome segregation P
IMP
SceS000000673
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000673
IMP
SceS000000673

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
101558

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPBC19G7.10c GI:19112768 O42958
Saccharomyces cerevisiae (Sce) PAT1
(S000000673)		 GI:10383807 P25644
Kluyveromyces lactis (Kla) KLLA0F27357g GI:50312523
Eremothecium gossypii (Ego) AGOS_AGL220W GI:45200877
Magnaporthe grisea (Mgr) MGG_08693 GI:39948517
Neurospora crassa (Ncr) NCU06540.1 GI:32411829


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0005737 cytoplasm C
IDA
SpoSPBC19G7.10c
GO:0005829 cytosol C
IDA
SpoSPBC19G7.10c
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000000673
GO:0003674 molecular_function F
ND
SceS000000673
SpoSPBC19G7.10c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA		 P
IMP
SceS000000673
IPI
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0006446 regulation of translational initiation P
IGI
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0007059 chromosome segregation P
IMP
SceS000000673
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000673
IMP
SceS000000673

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_11599

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago4092 AGL220W
Arabidopsis thaliana (Ath) ath11296 At2g41420.1
Candida glabrata (Cgl) cgl4963 CAGL0M07029g
Cryptococcus neoformans (Cne) cne2601 181.m08813
Debaryomyces hansenii (Dha) dha1859 DEHA0C09724g
Kluyveromyces lactis (Kla) kla5297 KLLA0F27357g
Neurospora crassa (Ncr) ncr6358 NCU06540.2
Saccharomyces cerevisiae (Sce) sce734 YCR077C
(S000000673)
Schizosaccharomyces pombe (Spo) spo2355 SPBC19G7.10c O42958
Yarrowia lipolytica (Yli) yli4667 YALI0E19514g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0005737 cytoplasm C
IDA
SpoSPBC19G7.10c
GO:0005829 cytosol C
IDA
SpoSPBC19G7.10c
GO:0005886 plasma membrane C
IDA
AthAt2g41420
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000000673
GO:0003674 molecular_function F
ND
SceS000000673
SpoSPBC19G7.10c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA		 P
IMP
SceS000000673
IPI
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0006446 regulation of translational initiation P
IGI
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0007059 chromosome segregation P
IMP
SceS000000673
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000673
IMP
SceS000000673

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC19G7.10c
(O42958)		 YCR077C
(S000000673)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0005737 cytoplasm C
IDA
SpoSPBC19G7.10c
GO:0005829 cytosol C
IDA
SpoSPBC19G7.10c
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000000673
GO:0003674 molecular_function F
ND
SceS000000673
SpoSPBC19G7.10c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA		 P
IMP
SceS000000673
IPI
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0006446 regulation of translational initiation P
IGI
SceS000000673
IMP
SceS000000673
ISS
SpoSPBC19G7.10c
GO:0007059 chromosome segregation P
IMP
SceS000000673
GO:0033962 cytoplasmic mRNA processing body
assembly		 P
IGI
SceS000000673
IMP
SceS000000673

Back to the top
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GO info in one table:

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