YOGY Home YOGY Help

Search term: YCR092C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name MSH3
SGD link S000000688
Alternative ID YCR092C
Description Mismatch repair protein, forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability
Synonyms YCR092C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0218 A--HYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Mismatch repair MSH3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g25540 GI:15235123
Homo sapiens (Hsa) Hs4505249 GI:4505249
Saccharomyces cerevisiae (Sce) YCR092c
(S000000688)
GI:6319935
Schizosaccharomyces pombe (Spo) SPAC8F11.03 GI:19114864 P26359
Arabidopsis thaliana (Ath) At4g25540 GI:15235123
Homo sapiens (Hsa) Hs4505249 GI:4505249
Saccharomyces cerevisiae (Sce) YCR092c
(S000000688)
GI:6319935
Schizosaccharomyces pombe (Spo) SPAC8F11.03 GI:19114864 P26359
Arabidopsis thaliana (Ath) At4g25540 GI:15235123
Homo sapiens (Hsa) Hs4505249 GI:4505249
Saccharomyces cerevisiae (Sce) YCR092c
(S000000688)
GI:6319935
Schizosaccharomyces pombe (Spo) SPAC8F11.03 GI:19114864 P26359


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000228 nuclear chromosome C
ISS
SpoSPAC8F11.03
GO:0005634 nucleus C
IDA
SceS000000688
SpoSPAC8F11.03
GO:0005737 cytoplasm C
IDA
SceS000000688
GO:0032302 MutSbeta complex C
IPI
SceS000000688
ISS
SpoSPAC8F11.03
GO:0000400 four-way junction DNA binding F
RCA
SceS000000688
GO:0000403 Y-form DNA binding F
IDA
SceS000000688
ISS
SpoSPAC8F11.03
GO:0000404 loop DNA binding F
IDA
SceS000000688
ISS
SpoSPAC8F11.03
GO:0000406 double-strand/single-strand DNA junction
binding
F
IDA
SceS000000688
ISS
SpoSPAC8F11.03
GO:0001882 nucleoside binding F
RCA
SceS000000688
GO:0001883 purine nucleoside binding F
RCA
SceS000000688
GO:0003684 damaged DNA binding F
IDA
AthAt4g25540
ISS
SpoSPAC8F11.03
GO:0005515 protein binding F
IPI
AthAt4g25540
GO:0005524 ATP binding F
ISS
SpoSPAC8F11.03
RCA
SceS000000688
GO:0008094 DNA-dependent ATPase activity F
ISS
SpoSPAC8F11.03
GO:0016887 ATPase activity F
RCA
SceS000000688
GO:0030554 adenyl nucleotide binding F
RCA
SceS000000688
GO:0030983 mismatched DNA binding F
IDA
AthAt4g25540
SceS000000688
GO:0032135 DNA insertion or deletion binding F
IDA
SceS000000688
ISS
SpoSPAC8F11.03
GO:0032137 guanine/thymine mispair binding F
RCA
SceS000000688
GO:0032559 adenyl ribonucleotide binding F
RCA
SceS000000688
GO:0000710 meiotic mismatch repair P
IMP
SceS000000688
ISS
SpoSPAC8F11.03
GO:0000735 removal of nonhomologous ends P
IGI
SceS000000688
IMP
SceS000000688
ISS
SpoSPAC8F11.03
TAS
SceS000000688
GO:0006298 mismatch repair P
IMP
SceS000000688
ISS
AthAt4g25540
GO:0006310 DNA recombination P
IMP
SceS000000688
GO:0006312 mitotic recombination P
IMP
SceS000000688
GO:0007131 reciprocal meiotic recombination P
IMP
SpoSPAC8F11.03
GO:0007534 gene conversion at mating-type
locus
P
IMP
SpoSPAC8F11.03
GO:0043570 maintenance of DNA repeat elements P
IMP
SpoSPAC8F11.03

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68607

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) MSH3
(S000000688)
GI:157285763
Kluyveromyces lactis (Kla) KLLA0C18590g GI:50306133
Eremothecium gossypii (Ego) AGOS_ADR168C GI:45188042


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000688
GO:0005737 cytoplasm C
IDA
SceS000000688
GO:0032302 MutSbeta complex C
IPI
SceS000000688
GO:0000400 four-way junction DNA binding F
RCA
SceS000000688
GO:0000403 Y-form DNA binding F
IDA
SceS000000688
GO:0000404 loop DNA binding F
IDA
SceS000000688
GO:0000406 double-strand/single-strand DNA junction
binding
F
IDA
SceS000000688
GO:0001882 nucleoside binding F
RCA
SceS000000688
GO:0001883 purine nucleoside binding F
RCA
SceS000000688
GO:0005524 ATP binding F
RCA
SceS000000688
GO:0016887 ATPase activity F
RCA
SceS000000688
GO:0030554 adenyl nucleotide binding F
RCA
SceS000000688
GO:0030983 mismatched DNA binding F
IDA
SceS000000688
GO:0032135 DNA insertion or deletion binding F
IDA
SceS000000688
GO:0032137 guanine/thymine mispair binding F
RCA
SceS000000688
GO:0032559 adenyl ribonucleotide binding F
RCA
SceS000000688
GO:0000710 meiotic mismatch repair P
IMP
SceS000000688
GO:0000735 removal of nonhomologous ends P
IGI
SceS000000688
IMP
SceS000000688
TAS
SceS000000688
GO:0006298 mismatch repair P
IMP
SceS000000688
GO:0006310 DNA recombination P
IMP
SceS000000688
GO:0006312 mitotic recombination P
IMP
SceS000000688

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_206

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga5483 ENSANGP00000014707
Ashbya gossypii (Ago) ago729 ABR137W
Ashbya gossypii (Ago) ago1910 ADR168C
Ashbya gossypii (Ago) ago4427 AGR116W
Arabidopsis thaliana (Ath) ath14774 At3g24495.1
Arabidopsis thaliana (Ath) ath18083 At4g02070.1
Arabidopsis thaliana (Ath) ath20538 At4g25540.1
Caenorhabditis elegans (Cel) cel19117 Y47G6A.11
(CE28985;
WBGene00003422)
Candida glabrata (Cgl) cgl961 CAGL0E00473g
Candida glabrata (Cgl) cgl1977 CAGL0G08129g
Candida glabrata (Cgl) cgl4642 CAGL0L13002g
Cryptococcus neoformans (Cne) cne3574 176.m02308
Cryptococcus neoformans (Cne) cne3658 176.m02393
Cryptococcus neoformans (Cne) cne5293 179.m00142
Dictyostelium discoideum (Ddi) ddi6179 DDB0204604
Dictyostelium discoideum (Ddi) ddi1617 DDB0217743
Dictyostelium discoideum (Ddi) ddi11575 DDB0229918
Debaryomyces hansenii (Dha) dha1274 DEHA0B13673g
Debaryomyces hansenii (Dha) dha3974 DEHA0E16566g
Debaryomyces hansenii (Dha) dha5373 DEHA0F22198g
Drosophila melanogaster (Dme) dme9581 CG7003-PA
(FBgn0036486)
Danio rerio (Dre) dre28535 ENSDARP00000017721
(msh6)
Q803S7
Danio rerio (Dre) dre16038 ENSDARP00000042277
Danio rerio (Dre) dre16039 ENSDARP00000042980
Escherichia coli (Eco) eco2641 16130640
Encephalitozoon cuniculi (Ecu) ecu596 19074680
Takifugu rubripes (Fru) fru22790 SINFRUP00000145736
Takifugu rubripes (Fru) fru31929 SINFRUP00000164085
Takifugu rubripes (Fru) fru31930 SINFRUP00000164089
Takifugu rubripes (Fru) fru22789 SINFRUP00000166199
Takifugu rubripes (Fru) fru31931 SINFRUP00000171309
Gallus gallus (Gga) gga14474 ENSGALP00000014551
(MSH6)
Gallus gallus (Gga) gga14475 ENSGALP00000014552
Gallus gallus (Gga) gga27997 ENSGALP00000025089
Gallus gallus (Gga) gga27998 ENSGALP00000025090
Homo sapiens (Hsa) hsa17789 ENSP00000234420
(MSH6)
P52701-1
Homo sapiens (Hsa) hsa25455 ENSP00000265081
(MSH3)
P20585
Kluyveromyces lactis (Kla) kla1991 KLLA0C17732g
Kluyveromyces lactis (Kla) kla2027 KLLA0C18590g
Kluyveromyces lactis (Kla) kla5156 KLLA0F24156g
Mus musculus (Mmu) mmu12216 ENSMUSP00000005503
(MGI:1343961)
Q61061
Mus musculus (Mmu) mmu7353 ENSMUSP00000022220
(MGI:109519)
B2RWY6
Neurospora crassa (Ncr) ncr7209 NCU07407.2
Neurospora crassa (Ncr) ncr7907 NCU08115.2
Neurospora crassa (Ncr) ncr7927 NCU08135.2
Oryza sativa (Osa) osa10799 2756.m00107
Oryza sativa (Osa) osa10885 2758.m00119
Oryza sativa (Osa) osa47200 5773.m00098
Oryza sativa (Osa) osa52886 5946.m00119
Oryza sativa (Osa) osa53230 5956.m00244
Oryza sativa (Osa) osa81378 8123.m00150
Plasmodium falciparum (Pfa) pfa3505 PFE0270c
Rattus norvegicus (Rno) rno15338 ENSRNOP00000018449
(RGD:1563954)
Rattus norvegicus (Rno) rno24696 ENSRNOP00000021923
Saccharomyces cerevisiae (Sce) sce749 YCR092C
(S000000688)
Saccharomyces cerevisiae (Sce) sce1132 YDR097C
(S000002504)
Saccharomyces cerevisiae (Sce) sce2886 YHR120W
(S000001162)
Schizosaccharomyces pombe (Spo) spo551 SPAC13F5.01c O13921
Schizosaccharomyces pombe (Spo) spo544 SPAC8F11.03 P26359
Schizosaccharomyces pombe (Spo) spo3713 SPCC285.16c O74502
Yarrowia lipolytica (Yli) yli321 YALI0A09724g
Yarrowia lipolytica (Yli) yli1156 YALI0B10197g
Yarrowia lipolytica (Yli) yli6451 YALI0F26499g