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Search term: YDL020C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPN4
SGD link S000002178
Alternative ID YDL020C
Description Transcription factor that stimulates expression of proteasome genes; Rpn4p levels are in turn regulated by the 26S proteasome in a negative feedback control mechanism; RPN4 is transcriptionally regulated by various stress responses
Synonyms YDL020C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48607

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RPN4
(S000002178)
GI:6320184
Kluyveromyces lactis (Kla) KLLA0C04103g GI:50304849
Eremothecium gossypii (Ego) AGOS_AER227W GI:45190830


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000002178
GO:0003700 transcription factor activity F
IDA
SceS000002178
IMP
SceS000002178
GO:0016563 transcription activator activity F
IDA
SceS000002178
IMP
SceS000002178
GO:0043565 sequence-specific DNA binding F
IDA
SceS000002178
GO:0000086 G2/M transition of mitotic cell
cycle
P
IMP
SceS000002178
GO:0006508 proteolysis P
RCA
SceS000002178
GO:0006914 autophagy P
RCA
SceS000002178
GO:0045732 positive regulation of protein catabolic
process
P
IMP
SceS000002178
GO:0045739 positive regulation of DNA repair P
IMP
SceS000002178
GO:0045941 positive regulation of transcription P
IDA
SceS000002178
IMP
SceS000002178
GO:0046685 response to arsenic P
IMP
SceS000002178

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_15224

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago2729 AER227W
Candida glabrata (Cgl) cgl3595 CAGL0K01727g
Debaryomyces hansenii (Dha) dha2929 DEHA0D14124g
Kluyveromyces lactis (Kla) kla1379 KLLA0C04103g
Neurospora crassa (Ncr) ncr1594 NCU01640.2
Saccharomyces cerevisiae (Sce) sce787 YDL020C
(S000002178)
Schizosaccharomyces pombe (Spo) spo1768 SPBC1105.14 Q9Y815
Yarrowia lipolytica (Yli) yli6426 YALI0F25861g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000978
ISS
SpoSPBC1105.14
GO:0005634 nucleus C
IC
SceS000002178
IDA
SpoSPBC1105.14
GO:0003700 transcription factor activity F
IDA
SceS000002178
IMP
SceS000002178
GO:0003704 specific RNA polymerase II transcription factor
activity
F
NAS
SpoSPBC1105.14
GO:0016563 transcription activator activity F
IDA
SceS000002178
IMP
SceS000002178
ISS
SpoSPBC1105.14
GO:0043565 sequence-specific DNA binding F
IDA
SceS000002178
GO:0000086 G2/M transition of mitotic cell
cycle
P
IMP
SceS000002178
GO:0006508 proteolysis P
RCA
SceS000002178
GO:0006914 autophagy P
RCA
SceS000002178
GO:0010673 positive regulation of transcription from RNA
polymerase II promoter, meiotic
P
IEP
SpoSPBC1105.14
GO:0032569 gene-specific transcription from RNA polymerase II
promoter
P
NAS
SpoSPBC1105.14
GO:0033554 cellular response to stress P
IEP
SpoSPBC1105.14
GO:0045732 positive regulation of protein catabolic
process
P
IMP
SceS000002178
GO:0045739 positive regulation of DNA repair P
IMP
SceS000002178
GO:0045941 positive regulation of transcription P
IDA
SceS000002178
IMP
SceS000002178
GO:0046685 response to arsenic P
IMP
SceS000002178
GO:0051039 positive regulation of transcription,
meiotic
P
IEP
SpoSPBC1105.14

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC1105.14
(Q9Y815)
YDL020C
(S000002178)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000978
ISS
SpoSPBC1105.14
GO:0005634 nucleus C
IC
SceS000002178
IDA
SpoSPBC1105.14
GO:0003700 transcription factor activity F
IDA
SceS000002178
IMP
SceS000002178
GO:0003704 specific RNA polymerase II transcription factor
activity
F
NAS
SpoSPBC1105.14
GO:0016563 transcription activator activity F
IDA
SceS000002178
IMP
SceS000002178
ISS
SpoSPBC1105.14
GO:0043565 sequence-specific DNA binding F
IDA
SceS000002178
GO:0000086 G2/M transition of mitotic cell
cycle
P
IMP
SceS000002178
GO:0006508 proteolysis P
RCA
SceS000002178
GO:0006914 autophagy P
RCA
SceS000002178
GO:0010673 positive regulation of transcription from RNA
polymerase II promoter, meiotic
P
IEP
SpoSPBC1105.14
GO:0032569 gene-specific transcription from RNA polymerase II
promoter
P
NAS
SpoSPBC1105.14
GO:0033554 cellular response to stress P
IEP
SpoSPBC1105.14
GO:0045732 positive regulation of protein catabolic
process
P
IMP
SceS000002178
GO:0045739 positive regulation of DNA repair P
IMP
SceS000002178
GO:0045941 positive regulation of transcription P
IDA
SceS000002178
IMP
SceS000002178
GO:0046685 response to arsenic P
IMP
SceS000002178
GO:0051039 positive regulation of transcription,
meiotic
P
IEP
SpoSPBC1105.14

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GO info in one table:

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