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Search term: YDL030W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP9
SGD link S000002188
Alternative ID YDL030W
Description Subunit of the SF3a splicing factor complex, required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex
Synonyms YDL030W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2636 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Splicing factor 3a, subunit 3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g06160 GI:15239948
Caenorhabditis elegans (Cel) CE23981
(WBGene00011758)		 GI:17536257 Q22469
Drosophila melanogaster (Dme) 7296720
(FBgn0014366)		 GI:17137118
Homo sapiens (Hsa) Hs5803167
(SF3A3)		 GI:5803167 Q12874
Homo sapiens (Hsa) Hs18578493 GI:18578493
Saccharomyces cerevisiae (Sce) YDL030w
(S000002188)		 GI:6320174 P19736
Schizosaccharomyces pombe (Spo) SPBC36.09 GI:19112129 O59706
Encephalitozoon cuniculi (Ecu) ECU07g1140 GI:19074537 Q8SUY4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC36.09
GO:0005681 spliceosomal complex C
IDA
HsaSF3A3
SpoSPBC36.09
ISS
DmeFBgn0014366
GO:0005686 U2 snRNP C
ISS
DmeFBgn0014366
SpoSPBC36.09
TAS
SceS000002188
S000002188
GO:0005829 cytosol C
IDA
AthAt5g06160
SpoSPBC36.09
GO:0071004 U2-type prespliceosome C
IDA
SceS000002188
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0014366
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0014366
GO:0003723 RNA binding F
IDA
SceS000002188
ISS
SpoSPBC36.09
GO:0005515 protein binding F
IPI
HsaSF3A3
GO:0000003 reproduction P
IMP
CelWBGene00011758
GO:0000375 RNA splicing, via transesterification
reactions		 P
TAS
HsaSF3A3
GO:0000389 nuclear mRNA 3'-splice site recognition P
TAS
HsaSF3A3
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0014366
HsaSF3A3
IDA
SceS000002188
ISS
DmeFBgn0014366
SpoSPBC36.09
GO:0006397 mRNA processing P
IMP
HsaSF3A3
GO:0006414 translational elongation P
RCA
SceS000002188
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0014366
GO:0008380 RNA splicing P
EXP
HsaSF3A3
GO:0009566 fertilization P
IMP
DmeFBgn0014366
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011758
GO:0010171 body morphogenesis P
IMP
CelWBGene00011758
GO:0016071 mRNA metabolic process P
RCA
SceS000002188
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00011758
GO:0040011 locomotion P
IMP
CelWBGene00011758
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00011758
GO:0040039 inductive cell migration P
IMP
CelWBGene00011758
GO:0045694 regulation of embryo sac egg cell
differentiation		 P
IMP
AthAt5g06160
GO:0051533 positive regulation of NFAT protein import into
nucleus		 P
IMP
DmeFBgn0014366

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
104075

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) PRP9
(S000002188)		 GI:6320174 P19736
Kluyveromyces lactis (Kla) KLLA0F24662g GI:50312291
Eremothecium gossypii (Ego) AGOS_AEL085W GI:45190522


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005686 U2 snRNP C
TAS
SceS000002188
S000002188
GO:0071004 U2-type prespliceosome C
IDA
SceS000002188
GO:0003723 RNA binding F
IDA
SceS000002188
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
SceS000002188
GO:0006414 translational elongation P
RCA
SceS000002188
GO:0016071 mRNA metabolic process P
RCA
SceS000002188

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2259

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5367 ENSANGP00000020368
Ashbya gossypii (Ago) ago2421 AEL085W
Arabidopsis thaliana (Ath) ath22807 At5g06160.1
Caenorhabditis elegans (Cel) cel15464 T13H5.4
(CE23981;
WBGene00011758)
Candida glabrata (Cgl) cgl3588 CAGL0K01573g
Cryptococcus neoformans (Cne) cne5684 179.m00547
Dictyostelium discoideum (Ddi) ddi11734 DDB0229922
Debaryomyces hansenii (Dha) dha3770 DEHA0E11946g
Drosophila melanogaster (Dme) dme11053 CG2925-PA
(FBgn0014366)
Danio rerio (Dre) dre26639 ENSDARP00000018349
Encephalitozoon cuniculi (Ecu) ecu1923 19074537
Takifugu rubripes (Fru) fru17294 SINFRUP00000145351
Gallus gallus (Gga) gga12880 ENSGALP00000002337
Gallus gallus (Gga) gga12879 ENSGALP00000002338
(SF3A3)		 Q5F387
Homo sapiens (Hsa) hsa888 ENSP00000329527
Kluyveromyces lactis (Kla) kla5178 KLLA0F24662g
Mus musculus (Mmu) mmu18859 ENSMUSP00000030734
(MGI:1922312)		 Q9D554
Neurospora crassa (Ncr) ncr1198 NCU01235.2
Oryza sativa (Osa) osa62727 6680.m00145
Plasmodium falciparum (Pfa) pfa4709 PFI1215w
Rattus norvegicus (Rno) rno23897 ENSRNOP00000010373
(RGD:1308726)		 Q4KLI7
Saccharomyces cerevisiae (Sce) sce799 YDL030W
(S000002188)
Schizosaccharomyces pombe (Spo) spo3319 SPBC36.09 O59706
Yarrowia lipolytica (Yli) yli5746 YALI0F09493g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1922312
GO:0005634 nucleus C
IDA
SpoSPBC36.09
GO:0005681 spliceosomal complex C
IDA
SpoSPBC36.09
ISS
DmeFBgn0014366
GO:0005686 U2 snRNP C
ISS
DmeFBgn0014366
SpoSPBC36.09
TAS
SceS000002188
S000002188
GO:0005829 cytosol C
IDA
AthAt5g06160
SpoSPBC36.09
GO:0071004 U2-type prespliceosome C
IDA
SceS000002188
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0014366
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0014366
GO:0003674 molecular_function F
ND
MmuMGI:1922312
GO:0003723 RNA binding F
IDA
SceS000002188
ISS
SpoSPBC36.09
GO:0000003 reproduction P
IMP
CelWBGene00011758
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0014366
IDA
SceS000002188
ISS
DmeFBgn0014366
SpoSPBC36.09
GO:0006414 translational elongation P
RCA
SceS000002188
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0014366
GO:0008150 biological_process P
ND
MmuMGI:1922312
GO:0009566 fertilization P
IMP
DmeFBgn0014366
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00011758
GO:0010171 body morphogenesis P
IMP
CelWBGene00011758
GO:0016071 mRNA metabolic process P
RCA
SceS000002188
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00011758
GO:0040011 locomotion P
IMP
CelWBGene00011758
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00011758
GO:0040039 inductive cell migration P
IMP
CelWBGene00011758
GO:0045694 regulation of embryo sac egg cell
differentiation		 P
IMP
AthAt5g06160
GO:0051533 positive regulation of NFAT protein import into
nucleus		 P
IMP
DmeFBgn0014366

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC36.09
(O59706)		 YDL030W
(S000002188)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC36.09
GO:0005681 spliceosomal complex C
IDA
SpoSPBC36.09
GO:0005686 U2 snRNP C
ISS
SpoSPBC36.09
TAS
SceS000002188
S000002188
GO:0005829 cytosol C
IDA
SpoSPBC36.09
GO:0071004 U2-type prespliceosome C
IDA
SceS000002188
GO:0003723 RNA binding F
IDA
SceS000002188
ISS
SpoSPBC36.09
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
SceS000002188
ISS
SpoSPBC36.09
GO:0006414 translational elongation P
RCA
SceS000002188
GO:0016071 mRNA metabolic process P
RCA
SceS000002188

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GO info in one table:

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