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Search term: YDL060W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TSR1
SGD link S000002218
Alternative ID YDL060W
Description Protein required for processing of 20S pre-rRNA in the cytoplasm, associates with pre-40S ribosomal particles
Synonyms YDL060W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1980 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g42440 GI:15224025
Caenorhabditis elegans (Cel) CE02624
(WBGene00006497)
GI:17533085 Q19329
Drosophila melanogaster (Dme) 7296422 GI:7296422
Homo sapiens (Hsa) Hs17438157 GI:17438157
Homo sapiens (Hsa) Hs8922496 GI:8922496
Saccharomyces cerevisiae (Sce) YDL060w
(S000002218)
GI:6320143 Q07381
Schizosaccharomyces pombe (Spo) SPAC23H4.15 GI:19114303 O13956
Encephalitozoon cuniculi (Ecu) ECU02g1440 GI:19074063 Q8SW93


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23H4.15
GO:0005730 nucleolus C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0005737 cytoplasm C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0030686 90S preribosome C
IDA
SceS000002218
GO:0003674 molecular_function F
ND
AthAt1g42440
GO:0043021 ribonucleoprotein binding F
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0006364 rRNA processing P
IMP
SceS000002218
ISS
SpoSPAC23H4.15
GO:0009451 RNA modification P
RCA
SceS000002218
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00006497
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00006497
GO:0040011 locomotion P
IMP
CelWBGene00006497
GO:0042254 ribosome biogenesis P
IMP
SceS000002218
ISS
SpoSPAC23H4.15

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
101563

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC23H4.15 GI:19114303 O13956
Saccharomyces cerevisiae (Sce) TSR1
(S000002218)
GI:6320143 Q07381
Kluyveromyces lactis (Kla) KLLA0E05093g GI:50308351
Eremothecium gossypii (Ego) AGOS_AER051C GI:45190657
Magnaporthe grisea (Mgr) MGG_01087 GI:39973533
Neurospora crassa (Ncr) NCU01503.1 GI:32414925


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23H4.15
GO:0005730 nucleolus C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0005737 cytoplasm C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0030686 90S preribosome C
IDA
SceS000002218
GO:0043021 ribonucleoprotein binding F
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0006364 rRNA processing P
IMP
SceS000002218
ISS
SpoSPAC23H4.15
GO:0009451 RNA modification P
RCA
SceS000002218
GO:0042254 ribosome biogenesis P
IMP
SceS000002218
ISS
SpoSPAC23H4.15

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1855

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga11596 ENSANGP00000018078
Ashbya gossypii (Ago) ago2556 AER051C
Arabidopsis thaliana (Ath) ath3794 At1g42440.1
Caenorhabditis elegans (Cel) cel5958 F10G7.1
(CE02624;
WBGene00006497)
Candida glabrata (Cgl) cgl697 CAGL0D00880g
Cryptococcus neoformans (Cne) cne3061 167.m03365
Dictyostelium discoideum (Ddi) ddi5822 DDB0205380
Debaryomyces hansenii (Dha) dha538 DEHA0A12001g
Drosophila melanogaster (Dme) dme10565 CG7338-PA
(FBgn0037073)
Danio rerio (Dre) dre5134 ENSDARP00000045602
(tsr1)
Q32LR8
Encephalitozoon cuniculi (Ecu) ecu142 19074063
Takifugu rubripes (Fru) fru6461 SINFRUP00000170977
Takifugu rubripes (Fru) fru6460 SINFRUP00000173476
Takifugu rubripes (Fru) fru6459 SINFRUP00000173486
Gallus gallus (Gga) gga8872 ENSGALP00000005037
(TSR1)
Gallus gallus (Gga) gga8873 ENSGALP00000005038
Homo sapiens (Hsa) hsa12789 ENSP00000301364
(TSR1)
Q2NL82
Kluyveromyces lactis (Kla) kla3176 KLLA0E05093g
Mus musculus (Mmu) mmu4224 ENSMUSP00000039027
(MGI:2144566)
Q5SWD9-1
Neurospora crassa (Ncr) ncr1458 NCU01503.2
Oryza sativa (Osa) osa54843 6317.m00118
Oryza sativa (Osa) osa59283 6340.m00129
Plasmodium falciparum (Pfa) pfa1174 PF14_0494
Rattus norvegicus (Rno) rno5553 ENSRNOP00000003992
Saccharomyces cerevisiae (Sce) sce830 YDL060W
(S000002218)
Schizosaccharomyces pombe (Spo) spo1929 SPAC23H4.15 O13956
Yarrowia lipolytica (Yli) yli1097 YALI0B08756g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2144566
GO:0005634 nucleus C
IDA
SpoSPAC23H4.15
GO:0005730 nucleolus C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0005737 cytoplasm C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0030686 90S preribosome C
IDA
SceS000002218
GO:0003674 molecular_function F
ND
AthAt1g42440
MmuMGI:2144566
PfaPF14_0494
GO:0043021 ribonucleoprotein binding F
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0006364 rRNA processing P
IMP
SceS000002218
ISS
SpoSPAC23H4.15
GO:0008150 biological_process P
ND
MmuMGI:2144566
PfaPF14_0494
GO:0009451 RNA modification P
RCA
SceS000002218
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00006497
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00006497
GO:0040011 locomotion P
IMP
CelWBGene00006497
GO:0042254 ribosome biogenesis P
IMP
SceS000002218
ISS
SpoSPAC23H4.15

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC23H4.15
(O13956)
YDL060W
(S000002218)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23H4.15
GO:0005730 nucleolus C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0005737 cytoplasm C
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0030686 90S preribosome C
IDA
SceS000002218
GO:0043021 ribonucleoprotein binding F
IDA
SceS000002218
ISS
SpoSPAC23H4.15
GO:0006364 rRNA processing P
IMP
SceS000002218
ISS
SpoSPAC23H4.15
GO:0009451 RNA modification P
RCA
SceS000002218
GO:0042254 ribosome biogenesis P
IMP
SceS000002218
ISS
SpoSPAC23H4.15

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Query species:

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Search for GO info:  

GO info in one table:

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