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Search term: YDL061C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPS29B
SGD link S000002219
Alternative ID YDL061C
Description Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins
Synonyms YDL061C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3506 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 40S ribosomal protein S29

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g43980 GI:15229840
Arabidopsis thaliana (Ath) At3g44010 GI:15229840
Caenorhabditis elegans (Cel) CE26849
(WBGene00004498)
GI:17554782 P90983
Drosophila melanogaster (Dme) 7299254 GI:7299254
Homo sapiens (Hsa) Hs22045088 GI:22045088
Homo sapiens (Hsa) Hs17448062 GI:17448062
Homo sapiens (Hsa) Hs17453422 GI:17453422
Homo sapiens (Hsa) Hs18547883 GI:18547883
Homo sapiens (Hsa) Hs18590622 GI:18590622
Homo sapiens (Hsa) Hs4506717
(RPS29)
GI:4506717 P62273
Saccharomyces cerevisiae (Sce) YDL061c
(S000002219)
GI:6320142 P41058
Saccharomyces cerevisiae (Sce) YLR388w
(S000004380)
GI:6323420 P41057
Schizosaccharomyces pombe (Spo) SPBC1685.09 GI:19112005 O74329
Encephalitozoon cuniculi (Ecu) ECU04g0125i GI:19074090 Q8SS73


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1685.09
GO:0005737 cytoplasm C
IDA
HsaRPS29
GO:0005829 cytosol C
EXP
HsaRPS29
IDA
SpoSPBC1685.09
GO:0005840 ribosome C
ISS
AthAt3g44010
At3g43980
GO:0015935 small ribosomal subunit C
IDA
HsaRPS29
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt3g44010
At3g43980
HsaRPS29
SceS000002219
S000004380
ISS
SpoSPBC1685.09
GO:0003735 structural constituent of ribosome F
IDA
HsaRPS29
SceS000004380
S000002219
ISS
AthAt3g44010
At3g43980
SpoSPBC1685.09
GO:0005515 protein binding F
IPI
HsaRPS29
GO:0008270 zinc ion binding F
IDA
HsaRPS29
GO:0000003 reproduction P
IMP
CelWBGene00004498
GO:0002119 nematode larval development P
IMP
CelWBGene00004498
GO:0006412 translation P
IC
HsaRPS29
SceS000004380
S000002219
ISS
AthAt3g44010
At3g43980
SpoSPBC1685.09
GO:0006414 translational elongation P
EXP
HsaRPS29
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004498
GO:0010171 body morphogenesis P
IMP
CelWBGene00004498
GO:0040007 growth P
IMP
CelWBGene00004498
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004498

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39791

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RPS29B
(S000002219)
GI:6320142 P41058
Saccharomyces cerevisiae (Sce) RPS29A
(S000004380)
GI:6323420 P41057
Kluyveromyces lactis (Kla) KLLA0E05071g GI:50308349
Eremothecium gossypii (Ego) AGOS_AER052W GI:45190658
Neurospora crassa (Ncr) NCU03738.1 GI:32404854


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000002219
S000004380
GO:0003735 structural constituent of ribosome F
IDA
SceS000004380
S000002219
GO:0006412 translation P
IC
SceS000004380
S000002219

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1103

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3700 ENSANGP00000018161
Ashbya gossypii (Ago) ago2557 AER052W
Arabidopsis thaliana (Ath) ath15666 At3g43980.1
Arabidopsis thaliana (Ath) ath15668 At3g44010.1
Arabidopsis thaliana (Ath) ath21508 At4g33865.1
Caenorhabditis elegans (Cel) cel461 B0412.4
(CE26849;
WBGene00004498)
Candida glabrata (Cgl) cgl696 CAGL0D00858g
Cryptococcus neoformans (Cne) cne5818 179.m00693
Dictyostelium discoideum (Ddi) ddi11788 DDB0231066
Debaryomyces hansenii (Dha) dha537 DEHA0A11979g
Drosophila melanogaster (Dme) dme11795 CG8495-PA
(FBgn0037752)
Drosophila melanogaster (Dme) dme11796 CG8495-PC
(FBgn0037752)
Danio rerio (Dre) dre4628 ENSDARP00000044947
Encephalitozoon cuniculi (Ecu) ecu728 19074090
Takifugu rubripes (Fru) fru13116 SINFRUP00000136108
Gallus gallus (Gga) gga20025 ENSGALP00000019945
(RPS29)
Homo sapiens (Hsa) hsa9478 ENSP00000245458
(RPS29)
P62273
Kluyveromyces lactis (Kla) kla3175 KLLA0E05071g
Mus musculus (Mmu) mmu5774 ENSMUSP00000038352
(MGI:107681)
P62274
Mus musculus (Mmu) mmu7254 ENSMUSP00000072477
Mus musculus (Mmu) mmu16114 ENSMUSP00000075791
Mus musculus (Mmu) mmu19954 ENSMUSP00000079061
(GI:629957)
Neurospora crassa (Ncr) ncr3628 NCU03738.2
Oryza sativa (Osa) osa31833 4393.m00171
Oryza sativa (Osa) osa33587 4642.m00136
Oryza sativa (Osa) osa62849 6682.m00139
Plasmodium falciparum (Pfa) pfa2277 MAL7P1.300
Rattus norvegicus (Rno) rno25191 ENSRNOP00000005577
(RGD:3596)
P62275
Rattus norvegicus (Rno) rno26982 ENSRNOP00000040703
(RGD:3596)
P62275
Rattus norvegicus (Rno) rno19971 ENSRNOP00000043270
(RGD:3596)
P62275
Rattus norvegicus (Rno) rno9585 ENSRNOP00000044909
(RGD:3596)
P62275
Saccharomyces cerevisiae (Sce) sce831 YDL061C
(S000002219)
Saccharomyces cerevisiae (Sce) sce4506 YLR388W
(S000004380)
Schizosaccharomyces pombe (Spo) spo683 SPBC1685.09 O74329
Yarrowia lipolytica (Yli) yli1096 YALI0B08748g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1685.09
GO:0005829 cytosol C
IDA
SpoSPBC1685.09
GO:0005840 ribosome C
ISS
AthAt3g44010
At3g43980
At4g33865
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt3g44010
At3g43980
At4g33865
SceS000002219
S000004380
ISA
MmuMGI:107681
ISO
MmuMGI:107681
ISS
SpoSPBC1685.09
GO:0003735 structural constituent of ribosome F
IDA
SceS000004380
S000002219
ISA
MmuMGI:107681
ISS
AthAt4g33865
At3g44010
At3g43980
SpoSPBC1685.09
GO:0008270 zinc ion binding F
ISA
MmuMGI:107681
GO:0000003 reproduction P
IMP
CelWBGene00004498
GO:0002119 nematode larval development P
IMP
CelWBGene00004498
GO:0006412 translation P
IC
SceS000004380
S000002219
ISA
MmuMGI:107681
ISS
AthAt3g44010
At3g43980
At4g33865
SpoSPBC1685.09
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004498
GO:0010171 body morphogenesis P
IMP
CelWBGene00004498
GO:0040007 growth P
IMP
CelWBGene00004498
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004498

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC1685.09
(O74329)
YDL061C
(S000002219)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1685.09
GO:0005829 cytosol C
IDA
SpoSPBC1685.09
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000002219
ISS
SpoSPBC1685.09
GO:0003735 structural constituent of ribosome F
IDA
SceS000002219
ISS
SpoSPBC1685.09
GO:0006412 translation P
IC
SceS000002219
ISS
SpoSPBC1685.09

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GO info in one table:

s.khadayate@ucl.ac.uk