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Search term: YDL076C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RXT3
SGD link S000002234
Alternative ID YDL076C
Description Subunit of the RPD3L complex; involved in histone deacetylation
Synonyms YDL076C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4843 A---YP-

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g08450 GI:15241625
Saccharomyces cerevisiae (Sce) YDL076c
(S000002234)		 GI:6320127 Q07458
Schizosaccharomyces pombe (Spo) SPCC1259.07 GI:19075563 O94707


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g08450
GO:0005634 nucleus C
IDA
SceS000002234
ISS
SpoSPCC1259.07
GO:0005783 endoplasmic reticulum C
IDA
SpoSPCC1259.07
GO:0032221 Rpd3S complex C
IDA
SpoSPCC1259.07
GO:0033698 Rpd3L complex C
IDA
SceS000002234
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000002234
SpoSPCC1259.07
GO:0003674 molecular_function F
ND
AthAt5g08450
SceS000002234
SpoSPCC1259.07
GO:0006338 chromatin remodeling P
IC
SpoSPCC1259.07
GO:0006342 chromatin silencing P
ISS
SpoSPCC1259.07
GO:0008150 biological_process P
ND
AthAt5g08450
GO:0016479 negative regulation of transcription from RNA
polymerase I promoter		 P
IMP
SceS000002234
GO:0016575 histone deacetylation P
IDA
SceS000002234
ISS
SpoSPCC1259.07

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38608

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RXT3
(S000002234)		 GI:6320127 Q07458
Kluyveromyces lactis (Kla) KLLA0B02915g GI:50303441
Eremothecium gossypii (Ego) AGOS_AER077W GI:45190683


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002234
GO:0033698 Rpd3L complex C
IDA
SceS000002234
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000002234
GO:0003674 molecular_function F
ND
SceS000002234
GO:0016479 negative regulation of transcription from RNA
polymerase I promoter		 P
IMP
SceS000002234
GO:0016575 histone deacetylation P
IDA
SceS000002234

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_13239

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago2582 AER077W
Candida glabrata (Cgl) cgl684 CAGL0D00594g
Cryptococcus neoformans (Cne) cne3964 185.m02559
Debaryomyces hansenii (Dha) dha2843 DEHA0D12298g
Kluyveromyces lactis (Kla) kla660 KLLA0B02915g
Saccharomyces cerevisiae (Sce) sce846 YDL076C
(S000002234)
Schizosaccharomyces pombe (Spo) spo1040 SPCC1259.07 O94707
Yarrowia lipolytica (Yli) yli1211 YALI0B11484g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002234
ISS
SpoSPCC1259.07
GO:0005783 endoplasmic reticulum C
IDA
SpoSPCC1259.07
GO:0032221 Rpd3S complex C
IDA
SpoSPCC1259.07
GO:0033698 Rpd3L complex C
IDA
SceS000002234
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000002234
SpoSPCC1259.07
GO:0003674 molecular_function F
ND
SceS000002234
SpoSPCC1259.07
GO:0006338 chromatin remodeling P
IC
SpoSPCC1259.07
GO:0006342 chromatin silencing P
ISS
SpoSPCC1259.07
GO:0016479 negative regulation of transcription from RNA
polymerase I promoter		 P
IMP
SceS000002234
GO:0016575 histone deacetylation P
IDA
SceS000002234
ISS
SpoSPCC1259.07

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1259.07
(O94707)		 YDL076C
(S000002234)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002234
ISS
SpoSPCC1259.07
GO:0005783 endoplasmic reticulum C
IDA
SpoSPCC1259.07
GO:0032221 Rpd3S complex C
IDA
SpoSPCC1259.07
GO:0033698 Rpd3L complex C
IDA
SceS000002234
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000002234
SpoSPCC1259.07
GO:0003674 molecular_function F
ND
SceS000002234
SpoSPCC1259.07
GO:0006338 chromatin remodeling P
IC
SpoSPCC1259.07
GO:0006342 chromatin silencing P
ISS
SpoSPCC1259.07
GO:0016479 negative regulation of transcription from RNA
polymerase I promoter		 P
IMP
SceS000002234
GO:0016575 histone deacetylation P
IDA
SceS000002234
ISS
SpoSPCC1259.07

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