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Search term: YDL084W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SUB2
SGD link S000002242
Alternative ID YDL084W
Description Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56
Synonyms YDL084W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0329 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g11170 GI:8953379
Arabidopsis thaliana (Ath) At5g11200 GI:8953382
Caenorhabditis elegans (Cel) CE03025 GI:17534741
Drosophila melanogaster (Dme) 7296990 GI:2500532
Homo sapiens (Hsa) Hs20548790 GI:20480977
Homo sapiens (Hsa) Hs21040371 GI:20544748
Homo sapiens (Hsa) Hs21040373 GI:21040373
Homo sapiens (Hsa) Hs22063157 GI:22063157
Homo sapiens (Hsa) Hs4758112
(BAT1)
GI:4758112 Q13838
Saccharomyces cerevisiae (Sce) YDL084w
(S000002242)
GI:6320119 Q07478
Schizosaccharomyces pombe (Spo) SPAC17G6.14c GI:19115173 O13792
Arabidopsis thaliana (Ath) At5g11170 GI:8953379
Arabidopsis thaliana (Ath) At5g11200 GI:8953382
Caenorhabditis elegans (Cel) CE03025 GI:17534741
Drosophila melanogaster (Dme) 7296990 GI:2500532
Homo sapiens (Hsa) Hs20548790 GI:20480977
Homo sapiens (Hsa) Hs21040371 GI:20544748
Homo sapiens (Hsa) Hs21040373 GI:21040373
Homo sapiens (Hsa) Hs22063157 GI:22063157
Homo sapiens (Hsa) Hs4758112
(BAT1)
GI:4758112 Q13838
Saccharomyces cerevisiae (Sce) YDL084w
(S000002242)
GI:6320119 Q07478
Schizosaccharomyces pombe (Spo) SPAC17G6.14c GI:19115173 O13792
Arabidopsis thaliana (Ath) At5g11170 GI:8953379
Arabidopsis thaliana (Ath) At5g11200 GI:8953382
Caenorhabditis elegans (Cel) CE03025 GI:17534741
Drosophila melanogaster (Dme) 7296990 GI:2500532
Homo sapiens (Hsa) Hs20548790 GI:20480977
Homo sapiens (Hsa) Hs21040371 GI:20544748
Homo sapiens (Hsa) Hs21040373 GI:21040373
Homo sapiens (Hsa) Hs22063157 GI:22063157
Homo sapiens (Hsa) Hs4758112
(BAT1)
GI:4758112 Q13838
Saccharomyces cerevisiae (Sce) YDL084w
(S000002242)
GI:6320119 Q07478
Schizosaccharomyces pombe (Spo) SPAC17G6.14c GI:19115173 O13792


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000346 transcription export complex C
IDA
HsaBAT1
IPI
SceS000002242
ISS
SpoSPAC17G6.14c
GO:0000781 chromosome, telomeric region C
IPI
SceS000002242
GO:0005618 cell wall C
IDA
AthAt5g11200
GO:0005634 nucleus C
IDA
SceS000002242
SpoSPAC17G6.14c
GO:0005681 spliceosomal complex C
IDA
HsaBAT1
ISS
SpoSPAC17G6.14c
TAS
SceS000002242
GO:0005687 U4 snRNP C
IDA
HsaBAT1
GO:0005688 U6 snRNP C
IDA
HsaBAT1
GO:0005730 nucleolus C
IDA
AthAt5g11170
GO:0004004 ATP-dependent RNA helicase activity F
IDA
HsaBAT1
IGI
SceS000002242
SpoSPAC17G6.14c
ISA
SceS000002242
GO:0005515 protein binding F
IPI
HsaBAT1
SpoSPAC17G6.14c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g11200
At5g11170
GO:0008186 RNA-dependent ATPase activity F
IDA
HsaBAT1
GO:0017070 U6 snRNA binding F
IDA
HsaBAT1
GO:0030621 U4 snRNA binding F
IDA
HsaBAT1
GO:0042802 identical protein binding F
IPI
HsaBAT1
GO:0043008 ATP-dependent protein binding F
IDA
HsaBAT1
GO:0000245 spliceosome assembly P
IDA
HsaBAT1
GO:0000348 nuclear mRNA branch site recognition P
ISS
SpoSPAC17G6.14c
TAS
SceS000002242
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
HsaBAT1
IMP
SceS000002242
GO:0006283 transcription-coupled nucleotide-excision
repair
P
IMP
SceS000002242
GO:0006348 chromatin silencing at telomere P
IMP
SceS000002242
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IMP
SceS000002242
GO:0006406 mRNA export from nucleus P
IDA
HsaBAT1
SceS000002242
IGI
HsaBAT1
IMP
SceS000002242
IPI
SceS000002242
ISS
SpoSPAC17G6.14c
GO:0008150 biological_process P
ND
AthAt5g11200
GO:0008380 RNA splicing P
IDA
HsaBAT1
GO:0010501 RNA secondary structure unwinding P
IDA
HsaBAT1
GO:0031124 mRNA 3'-end processing P
IMP
SceS000002242
GO:0046686 response to cadmium ion P
IEP
AthAt5g11170
GO:0046784 intronless viral mRNA export from host
nucleus
P
IDA
HsaBAT1

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48376

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) BAT1 GI:4758112 Q13838
Pan troglodytes (Ptr) BAT1 GI:114606329
Canis familiaris (Cfa) BAT1 GI:62177121
Mus musculus (Mmu) Bat1a
(MGI:99240)
GI:9790069 Q3TB18
Rattus norvegicus (Rno) Bat1 GI:51592092
Drosophila melanogaster (Dme) Hel25E
(FBgn0014189)
GI:24581952
Anopheles gambiae (Aga) AgaP_AGAP009075 GI:158299806
Schizosaccharomyces pombe (Spo) uap56
(SPAC17G6.14c)
GI:19115173 O13792
Saccharomyces cerevisiae (Sce) SUB2
(S000002242)
GI:6320119 Q07478
Kluyveromyces lactis (Kla) KLLA0E22033g GI:50309861
Eremothecium gossypii (Ego) AGOS_ADR260C GI:45188133
Magnaporthe grisea (Mgr) MGG_02806 GI:145610002
Arabidopsis thaliana (Ath) AT5G11170 GI:186522075
Arabidopsis thaliana (Ath) AT5G11200 GI:18416493
Oryza sativa (Osa) Os01g0549700 GI:115437444
Oryza sativa (Osa) Os01g0550000 GI:115437448
Plasmodium falciparum (Pfa) PFB0445c GI:124801080


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000346 transcription export complex C
IDA
HsaBAT1
IPI
SceS000002242
ISS
SpoSPAC17G6.14c
GO:0000781 chromosome, telomeric region C
IPI
SceS000002242
GO:0005575 cellular_component C
ND
PfaPFB0445c
GO:0005618 cell wall C
IDA
AthAt5g11200
GO:0005634 nucleus C
IC
DmeFBgn0014189
IDA
DmeFBgn0014189
SceS000002242
SpoSPAC17G6.14c
NAS
DmeFBgn0014189
GO:0005681 spliceosomal complex C
IDA
HsaBAT1
ISS
DmeFBgn0014189
SpoSPAC17G6.14c
TAS
SceS000002242
GO:0005687 U4 snRNP C
IDA
HsaBAT1
GO:0005688 U6 snRNP C
IDA
HsaBAT1
GO:0005730 nucleolus C
IDA
AthAt5g11170
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0014189
GO:0003724 RNA helicase activity F
ISS
DmeFBgn0014189
GO:0004004 ATP-dependent RNA helicase activity F
IDA
HsaBAT1
IGI
SceS000002242
SpoSPAC17G6.14c
ISA
SceS000002242
ISS
DmeFBgn0014189
PfaPFB0445c
NAS
DmeFBgn0014189
GO:0005515 protein binding F
IPI
HsaBAT1
SpoSPAC17G6.14c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt5g11200
At5g11170
GO:0008186 RNA-dependent ATPase activity F
IDA
HsaBAT1
GO:0017070 U6 snRNA binding F
IDA
HsaBAT1
GO:0030621 U4 snRNA binding F
IDA
HsaBAT1
GO:0042802 identical protein binding F
IPI
HsaBAT1
GO:0043008 ATP-dependent protein binding F
IDA
HsaBAT1
GO:0000245 spliceosome assembly P
IDA
HsaBAT1
GO:0000348 nuclear mRNA branch site recognition P
ISS
SpoSPAC17G6.14c
TAS
SceS000002242
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome
P
IMP
DmeFBgn0014189
GO:0000398 nuclear mRNA splicing, via spliceosome P
IGI
HsaBAT1
IMP
SceS000002242
ISS
DmeFBgn0014189
GO:0006283 transcription-coupled nucleotide-excision
repair
P
IMP
SceS000002242
GO:0006348 chromatin silencing at telomere P
IMP
SceS000002242
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IMP
SceS000002242
GO:0006406 mRNA export from nucleus P
IDA
HsaBAT1
SceS000002242
IGI
HsaBAT1
IMP
DmeFBgn0014189
SceS000002242
IPI
SceS000002242
ISS
SpoSPAC17G6.14c
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0014189
GO:0008150 biological_process P
ND
AthAt5g11200
PfaPFB0445c
GO:0008380 RNA splicing P
IDA
HsaBAT1
GO:0010501 RNA secondary structure unwinding P
IDA
HsaBAT1
GO:0031124 mRNA 3'-end processing P
IMP
SceS000002242
GO:0046686 response to cadmium ion P
IEP
AthAt5g11170
GO:0046784 intronless viral mRNA export from host
nucleus
P
IDA
HsaBAT1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1314

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga11189 ENSANGP00000023803
Ashbya gossypii (Ago) ago2001 ADR260C
Arabidopsis thaliana (Ath) ath23325 At5g11170.1
Arabidopsis thaliana (Ath) ath23329 At5g11200.1
Caenorhabditis elegans (Cel) cel2755 C26D10.2a
Candida glabrata (Cgl) cgl4381 CAGL0L06908g
Cryptococcus neoformans (Cne) cne2426 181.m08462
Cryptococcus neoformans (Cne) cne2427 181.m08644
Dictyostelium discoideum (Ddi) ddi4099 DDB0190682
Debaryomyces hansenii (Dha) dha4683 DEHA0F06688g
Drosophila melanogaster (Dme) dme899 CG7269-PA
(FBgn0014189)
Drosophila melanogaster (Dme) dme901 CG7269-PB
(FBgn0014189)
Drosophila melanogaster (Dme) dme900 CG7269-PC
(FBgn0014189)
Danio rerio (Dre) dre10105 ENSDARP00000003590
Danio rerio (Dre) dre7374 ENSDARP00000010925
(ddx39b)
Q803W0
Takifugu rubripes (Fru) fru8024 SINFRUP00000149671
Homo sapiens (Hsa) hsa15788 ENSP00000242776
(DDX39)
O00148
Homo sapiens (Hsa) hsa26805 ENSP00000266122
Kluyveromyces lactis (Kla) kla3943 KLLA0E22033g
Mus musculus (Mmu) mmu26290 ENSMUSP00000019576
(MGI:1915528)
Q8VDW0-1
Mus musculus (Mmu) mmu11550 ENSMUSP00000070682
(MGI:99240)
Q9Z1N5
Neurospora crassa (Ncr) ncr8845 NCU09076.2
Oryza sativa (Osa) osa19588 3373.m00122
Oryza sativa (Osa) osa19593 3373.m00125
Oryza sativa (Osa) osa32992 4623.m00147
Oryza sativa (Osa) osa33001 4623.m00150
Plasmodium falciparum (Pfa) pfa43 PFB0445c
Rattus norvegicus (Rno) rno17417 ENSRNOP00000001115
(RGD:70923)
Q63413
Rattus norvegicus (Rno) rno14797 ENSRNOP00000005915
Rattus norvegicus (Rno) rno14796 ENSRNOP00000040666
(RGD:619920)
Q5U216
Saccharomyces cerevisiae (Sce) sce854 YDL084W
(S000002242)
Schizosaccharomyces pombe (Spo) spo4689 SPAC17G6.14c O13792
Yarrowia lipolytica (Yli) yli380 YALI0A18139g