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Search term: YDL087C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LUC7
SGD link S000002245
Alternative ID YDL087C
Description Essential protein associated with the U1 snRNP complex; splicing factor involved in recognition of 5' splice site; contains two zinc finger motifs; N-terminal zinc finger binds pre-mRNA
Synonyms YDL087C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0796 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Spliceosome subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g03340 GI:6017114
Arabidopsis thaliana (Ath) At5g17440 GI:11357938
Arabidopsis thaliana (Ath) At5g51410 GI:15242081
Caenorhabditis elegans (Cel) CE01766
(WBGene00015207)		 GI:17531385
Caenorhabditis elegans (Cel) CE08893 GI:17532503
Caenorhabditis elegans (Cel) CE27458
(WBGene00022489)		 GI:17556741
Drosophila melanogaster (Dme) 7290737 GI:7290737
Drosophila melanogaster (Dme) 7293971 GI:7293971
Homo sapiens (Hsa) Hs7706310 GI:7706310
Homo sapiens (Hsa) Hs18566076 GI:18566076
Homo sapiens (Hsa) Hs19923485 GI:19923485 O95232
Homo sapiens (Hsa) Hs8922297 GI:8922297 Q9NQ29
Saccharomyces cerevisiae (Sce) YDL087c
(S000002245)		 GI:6320116 Q07508
Schizosaccharomyces pombe (Spo) SPCC16A11.13 GI:19075500 Q9USM4
Encephalitozoon cuniculi (Ecu) ECU10g0840 GI:19074693 Q8SUE8
Arabidopsis thaliana (Ath) At3g03340 GI:6017114
Arabidopsis thaliana (Ath) At5g17440 GI:11357938
Arabidopsis thaliana (Ath) At5g51410 GI:15242081
Caenorhabditis elegans (Cel) CE01766
(WBGene00015207)		 GI:17531385
Caenorhabditis elegans (Cel) CE08893 GI:17532503
Caenorhabditis elegans (Cel) CE27458
(WBGene00022489)		 GI:17556741
Drosophila melanogaster (Dme) 7290737 GI:7290737
Drosophila melanogaster (Dme) 7293971 GI:7293971
Homo sapiens (Hsa) Hs7706310 GI:7706310
Homo sapiens (Hsa) Hs18566076 GI:18566076
Homo sapiens (Hsa) Hs19923485 GI:19923485 O95232
Homo sapiens (Hsa) Hs8922297 GI:8922297 Q9NQ29
Saccharomyces cerevisiae (Sce) YDL087c
(S000002245)		 GI:6320116 Q07508
Schizosaccharomyces pombe (Spo) SPCC16A11.13 GI:19075500 Q9USM4
Encephalitozoon cuniculi (Ecu) ECU10g0840 GI:19074693 Q8SUE8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g51410
At5g17440
GO:0005634 nucleus C
IDA
SpoSPCC16A11.13
GO:0005681 spliceosomal complex C
NAS
SpoSPCC16A11.13
GO:0005685 U1 snRNP C
IDA
SpoSPCC16A11.13
IGI
SceS000002245
IMP
SceS000002245
GO:0005829 cytosol C
IDA
SpoSPCC16A11.13
GO:0071004 U2-type prespliceosome C
IDA
SceS000002245
GO:0003674 molecular_function F
ND
AthAt5g17440
GO:0003723 RNA binding F
TAS
AthAt5g51410
GO:0003729 mRNA binding F
IDA
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPCC16A11.13
GO:0006376 mRNA splice site selection P
IGI
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0006414 translational elongation P
RCA
SceS000002245
GO:0008150 biological_process P
ND
AthAt5g17440
At5g51410
GO:0009567 double fertilization forming a zygote and
endosperm		 P
IMP
AthAt3g03340
GO:0016071 mRNA metabolic process P
RCA
SceS000002245

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
100558

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) LUC7L GI:41393554
Pan troglodytes (Ptr) LUC7L GI:114660112
Canis familiaris (Cfa) LUC7L GI:57088133
Mus musculus (Mmu) Luc7l
(MGI:1914228)		 GI:114158677 Q05D11
Schizosaccharomyces pombe (Spo) luc7
(SPCC16A11.13)		 GI:19075500 Q9USM4
Saccharomyces cerevisiae (Sce) LUC7
(S000002245)		 GI:6320116 Q07508
Kluyveromyces lactis (Kla) KLLA0F07249g GI:50310773
Eremothecium gossypii (Ego) AGOS_ADR271W GI:45188144
Magnaporthe grisea (Mgr) MGG_03758 GI:39943494
Neurospora crassa (Ncr) NCU05645.1 GI:32410039
Arabidopsis thaliana (Ath) AT5G17440 GI:18418301
Arabidopsis thaliana (Ath) UNE6 GI:30678827
Oryza sativa (Osa) Os03g0843500 GI:115456527


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g17440
GO:0005634 nucleus C
IDA
MmuMGI:1914228
SpoSPCC16A11.13
GO:0005681 spliceosomal complex C
NAS
SpoSPCC16A11.13
GO:0005685 U1 snRNP C
IDA
SpoSPCC16A11.13
IGI
SceS000002245
IMP
SceS000002245
GO:0005829 cytosol C
IDA
SpoSPCC16A11.13
GO:0071004 U2-type prespliceosome C
IDA
SceS000002245
GO:0003674 molecular_function F
ND
AthAt5g17440
GO:0003729 mRNA binding F
IDA
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0005515 protein binding F
IPI
HsaLUC7L
MmuMGI:1914228
GO:0050733 RS domain binding F
IPI
MmuMGI:1914228
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPCC16A11.13
GO:0006376 mRNA splice site selection P
IGI
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0006414 translational elongation P
RCA
SceS000002245
GO:0008150 biological_process P
ND
AthAt5g17440
GO:0009567 double fertilization forming a zygote and
endosperm		 P
IMP
AthUNE6
GO:0016071 mRNA metabolic process P
RCA
SceS000002245
GO:0045843 negative regulation of striated muscle tissue
development		 P
IDA
MmuMGI:1914228

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_393

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7298 ENSANGP00000013639
Anopheles gambiae (Aga) aga10298 ENSANGP00000018276
Anopheles gambiae (Aga) aga10299 ENSANGP00000025137
Ashbya gossypii (Ago) ago2012 ADR271W
Arabidopsis thaliana (Ath) ath27080 At5g51410.1
Arabidopsis thaliana (Ath) ath27081 At5g51410.2
Caenorhabditis elegans (Cel) cel546 B0495.8a
(CE01766;
WBGene00015207)
Caenorhabditis elegans (Cel) cel4463 C50D2.8
(CE34769;
WBGene00016811)
Caenorhabditis elegans (Cel) cel17788 Y119D3B.12a
(CE27458;
WBGene00022489)
Caenorhabditis elegans (Cel) cel17789 Y119D3B.12b
(CE27239)
Candida glabrata (Cgl) cgl4387 CAGL0L07040g
Cryptococcus neoformans (Cne) cne224 162.m02680
Dictyostelium discoideum (Ddi) ddi5882 DDB0206200
Debaryomyces hansenii (Dha) dha4690 DEHA0F06842g
Drosophila melanogaster (Dme) dme16748 CG3198-PA
(FBgn0029887)
Drosophila melanogaster (Dme) dme9995 CG7564-PA
(FBgn0036734)
Danio rerio (Dre) dre28088 ENSDARP00000020501
(zgc:136380)		 Q1ED13
Danio rerio (Dre) dre309 ENSDARP00000042956
Danio rerio (Dre) dre311 ENSDARP00000044129
Danio rerio (Dre) dre310 ENSDARP00000045272
Danio rerio (Dre) dre312 ENSDARP00000047167
Encephalitozoon cuniculi (Ecu) ecu609 19074693
Takifugu rubripes (Fru) fru27787 SINFRUP00000136526
Takifugu rubripes (Fru) fru14560 SINFRUP00000139236
Takifugu rubripes (Fru) fru24989 SINFRUP00000141639
Takifugu rubripes (Fru) fru24990 SINFRUP00000141640
Takifugu rubripes (Fru) fru27788 SINFRUP00000170843
Takifugu rubripes (Fru) fru27786 SINFRUP00000172956
Gallus gallus (Gga) gga16494 ENSGALP00000011927
Gallus gallus (Gga) gga16495 ENSGALP00000011928
(RCJMB04_23i18)
Gallus gallus (Gga) gga16496 ENSGALP00000011929
Gallus gallus (Gga) gga16497 ENSGALP00000011930
Gallus gallus (Gga) gga6790 ENSGALP00000012171
(LUC7L)
Gallus gallus (Gga) gga6791 ENSGALP00000012172
Gallus gallus (Gga) gga784 ENSGALP00000019318
(LUC7L2)		 Q5ZLW7
Homo sapiens (Hsa) hsa14004 ENSP00000240304
(LUC7L3)		 O95232-1
Homo sapiens (Hsa) hsa29516 ENSP00000263545
(LUC7L2)		 Q9Y383-2
Homo sapiens (Hsa) hsa11329 ENSP00000293872
(LUC7L)		 Q9NQ29-1
Homo sapiens (Hsa) hsa14005 ENSP00000311535
(LUC7L3)		 C9JL41
Homo sapiens (Hsa) hsa11328 ENSP00000337507
(LUC7L)		 Q9NQ29-2
Homo sapiens (Hsa) hsa29518 ENSP00000347005
(LUC7L2)		 B7Z4Q3
Homo sapiens (Hsa) hsa29517 ENSP00000349920
Kluyveromyces lactis (Kla) kla4409 KLLA0F07249g
Mus musculus (Mmu) mmu4576 ENSMUSP00000021226
(MGI:1914934)		 Q5SUF2-2
Mus musculus (Mmu) mmu11211 ENSMUSP00000025023
(MGI:1914228)		 Q3TV90
Mus musculus (Mmu) mmu21659 ENSMUSP00000055254
(MGI:2183260)		 Q7TNC4-1
Mus musculus (Mmu) mmu11209 ENSMUSP00000080267
(MGI:1914228)		 Q05D11
Neurospora crassa (Ncr) ncr5486 NCU05645.2
Oryza sativa (Osa) osa69271 7072.m00130
Oryza sativa (Osa) osa69297 7072.m00166
Plasmodium falciparum (Pfa) pfa1182 PF14_0502
Rattus norvegicus (Rno) rno5899 ENSRNOP00000003914
(RGD:1307981)
Rattus norvegicus (Rno) rno21057 ENSRNOP00000008557
(RGD:1308651)		 B2RYP6
Rattus norvegicus (Rno) rno4721 ENSRNOP00000027811
(RGD:1307542)		 Q5FVI7
Rattus norvegicus (Rno) rno21058 ENSRNOP00000045058
(RGD:1308651)
Saccharomyces cerevisiae (Sce) sce859 YDL087C
(S000002245)
Schizosaccharomyces pombe (Spo) spo1645 SPCC16A11.13 Q9USM4
Yarrowia lipolytica (Yli) yli6489 YALI0F27467g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g51410
MmuMGI:1914934
GO:0005634 nucleus C
IDA
MmuMGI:1914228
SpoSPCC16A11.13
GO:0005681 spliceosomal complex C
NAS
SpoSPCC16A11.13
GO:0005685 U1 snRNP C
IDA
SpoSPCC16A11.13
IGI
SceS000002245
IMP
SceS000002245
ISS
DmeFBgn0029887
FBgn0036734
GO:0005829 cytosol C
IDA
SpoSPCC16A11.13
GO:0071004 U2-type prespliceosome C
IDA
SceS000002245
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036734
GO:0003674 molecular_function F
ND
MmuMGI:1914934
GO:0003723 RNA binding F
TAS
AthAt5g51410
GO:0003729 mRNA binding F
IDA
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0005515 protein binding F
IPI
MmuMGI:1914228
MGI:2183260
GO:0050733 RS domain binding F
IPI
MmuMGI:1914228
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPCC16A11.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036734
ISS
DmeFBgn0029887
FBgn0036734
GO:0006376 mRNA splice site selection P
IGI
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0006414 translational elongation P
RCA
SceS000002245
GO:0008150 biological_process P
ND
AthAt5g51410
MmuMGI:1914934
GO:0016071 mRNA metabolic process P
RCA
SceS000002245
GO:0045843 negative regulation of striated muscle tissue
development		 P
IDA
MmuMGI:1914228

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC16A11.13
(Q9USM4)		 YDL087C
(S000002245)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC16A11.13
GO:0005681 spliceosomal complex C
NAS
SpoSPCC16A11.13
GO:0005685 U1 snRNP C
IDA
SpoSPCC16A11.13
IGI
SceS000002245
IMP
SceS000002245
GO:0005829 cytosol C
IDA
SpoSPCC16A11.13
GO:0071004 U2-type prespliceosome C
IDA
SceS000002245
GO:0003729 mRNA binding F
IDA
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPCC16A11.13
GO:0006376 mRNA splice site selection P
IGI
SceS000002245
IMP
SceS000002245
ISS
SpoSPCC16A11.13
GO:0006414 translational elongation P
RCA
SceS000002245
GO:0016071 mRNA metabolic process P
RCA
SceS000002245

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