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Search term: YDL097C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPN6
SGD link S000002255
Alternative ID YDL097C
Description Essential, non-ATPase regulatory subunit of the 26S proteasome lid required for the assembly and activity of the 26S proteasome; the human homolog (S9 protein) partially rescues Rpn6p depletion
Synonyms YDL097C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1463 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING 26S proteasome regulatory complex, subunit RPN6/PSMD11

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g29150 GI:15218845
Caenorhabditis elegans (Cel) CE00232 GI:17553770
Caenorhabditis elegans (Cel) CE25011
(WBGene00004462)		 GI:17553730
Drosophila melanogaster (Dme) 7303147 GI:17137740 Q7KLV9
Homo sapiens (Hsa) Hs4506219 GI:4506219
Saccharomyces cerevisiae (Sce) YDL097c
(S000002255)		 GI:6320106 Q12377
Schizosaccharomyces pombe (Spo) SPAC23G3.11 GI:19114023 Q9P7S2
Encephalitozoon cuniculi (Ecu) ECU07g0590 GI:19074481 Q8SV20


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
CelWBGene00004462
SpoSPAC23G3.11
TAS
AthAt1g29150
GO:0005829 cytosol C
IDA
SpoSPAC23G3.11
GO:0008540 proteasome regulatory particle, base
subcomplex		 C
ISS
SpoSPAC23G3.11
GO:0008541 proteasome regulatory particle, lid
subcomplex		 C
IDA
SceS000002255
ISS
AthAt1g29150
GO:0034515 proteasome storage granule C
IDA
SceS000002255
GO:0003674 molecular_function F
ND
SpoSPAC23G3.11
GO:0005198 structural molecule activity F
IMP
SceS000002255
GO:0000003 reproduction P
IMP
CelWBGene00004462
GO:0000278 mitotic cell cycle P
IC
SpoSPAC23G3.11
GO:0002119 nematode larval development P
IMP
CelWBGene00004462
GO:0006508 proteolysis P
RCA
SceS000002255
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000002255
ISS
SpoSPAC23G3.11
TAS
AthAt1g29150
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000002255
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPAC23G3.11
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004462
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004462
GO:0030163 protein catabolic process P
TAS
AthAt1g29150
GO:0043248 proteasome assembly P
IMP
SceS000002255
GO:0046686 response to cadmium ion P
IEP
AthAt1g29150

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2108

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PSMD11 GI:28872725
Pan troglodytes (Ptr) PSMD11 GI:114668203
Canis familiaris (Cfa) PSMD11 GI:73966860
Mus musculus (Mmu) Psmd11
(MGI:1916327)		 GI:134053905 Q3THG2
Rattus norvegicus (Rno) Psmd11 GI:109488638
Gallus gallus (Gga) PSMD11 GI:118102811
Drosophila melanogaster (Dme) Rpn6
(FBgn0028689)		 GI:45551099
Anopheles gambiae (Aga) AgaP_AGAP001440 GI:158302046
Caenorhabditis elegans (Cel) rpn-6
(CE25011;
WBGene00004462)		 GI:71987084
Schizosaccharomyces pombe (Spo) rpn6
(SPAC23G3.11)		 GI:19114023 Q9P7S2
Saccharomyces cerevisiae (Sce) RPN6
(S000002255)		 GI:6320106 Q12377
Kluyveromyces lactis (Kla) KLLA0E01364g GI:50308019
Eremothecium gossypii (Ego) AGOS_ADR280W GI:45188153
Magnaporthe grisea (Mgr) MGG_03211 GI:39942262
Neurospora crassa (Ncr) NCU01596.1 GI:32415111
Arabidopsis thaliana (Ath) ATS9 GI:15218845
Oryza sativa (Osa) Os04g0444600 GI:115458588
Plasmodium falciparum (Pfa) PF14_0025 GI:124808004


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916327
GO:0005634 nucleus C
IDA
CelWBGene00004462
SpoSPAC23G3.11
TAS
AthATS9
GO:0005829 cytosol C
IDA
SpoSPAC23G3.11
GO:0005838 proteasome regulatory particle C
IDA
DmeFBgn0028689
ISS
DmeFBgn0028689
PfaPF14_0025
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0028689
GO:0008540 proteasome regulatory particle, base
subcomplex		 C
ISS
SpoSPAC23G3.11
GO:0008541 proteasome regulatory particle, lid
subcomplex		 C
IDA
SceS000002255
ISS
AthATS9
DmeFBgn0028689
NAS
DmeFBgn0028689
GO:0034515 proteasome storage granule C
IDA
SceS000002255
GO:0003674 molecular_function F
ND
MmuMGI:1916327
SpoSPAC23G3.11
GO:0004175 endopeptidase activity F
IDA
DmeFBgn0028689
ISS
PfaPF14_0025
GO:0005198 structural molecule activity F
IMP
SceS000002255
GO:0005515 protein binding F
IPI
HsaPSMD11
GO:0000003 reproduction P
IMP
CelWBGene00004462
GO:0000278 mitotic cell cycle P
IC
SpoSPAC23G3.11
GO:0002119 nematode larval development P
IMP
CelWBGene00004462
GO:0006508 proteolysis P
IDA
DmeFBgn0028689
ISS
DmeFBgn0028689
PfaPF14_0025
RCA
SceS000002255
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000002255
ISS
SpoSPAC23G3.11
TAS
AthATS9
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000002255
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPAC23G3.11
GO:0008150 biological_process P
ND
MmuMGI:1916327
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004462
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004462
GO:0030163 protein catabolic process P
TAS
AthATS9
GO:0031145 anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic
process		 P
EXP
HsaPSMD11
GO:0043248 proteasome assembly P
IMP
SceS000002255
GO:0046686 response to cadmium ion P
IEP
AthATS9
GO:0051436 negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle		 P
EXP
HsaPSMD11
GO:0051437 positive regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle		 P
EXP
HsaPSMD11

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1829

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3525 ENSANGP00000015227
Ashbya gossypii (Ago) ago2021 ADR280W
Arabidopsis thaliana (Ath) ath3043 At1g29150.1
Caenorhabditis elegans (Cel) cel10725 F57B9.10a
(CE25011;
WBGene00004462)
Caenorhabditis elegans (Cel) cel10726 F57B9.10b
(CE38077)
Candida glabrata (Cgl) cgl4396 CAGL0L07238g
Cryptococcus neoformans (Cne) cne2726 183.m01660
Dictyostelium discoideum (Ddi) ddi5990 DDB0218287
Debaryomyces hansenii (Dha) dha6515 DEHA0G18249g
Drosophila melanogaster (Dme) dme5129 CG10149-PA
(FBgn0028689)
Drosophila melanogaster (Dme) dme5130 CG10149-PB
(FBgn0028689)
Danio rerio (Dre) dre3532 ENSDARP00000020942
(psmd11b)		 Q7ZTZ8
Encephalitozoon cuniculi (Ecu) ecu1867 19074481
Takifugu rubripes (Fru) fru3578 SINFRUP00000139577
Takifugu rubripes (Fru) fru14985 SINFRUP00000147810
Homo sapiens (Hsa) hsa13423 ENSP00000261712
(PSMD11)		 Q53FT5
Kluyveromyces lactis (Kla) kla3009 KLLA0E01364g
Mus musculus (Mmu) mmu4377 ENSMUSP00000017572
(MGI:1916327)		 Q8BG32
Neurospora crassa (Ncr) ncr1550 NCU01596.2
Oryza sativa (Osa) osa84599 8274.m00118
Oryza sativa (Osa) osa84649 8275.m00046
Plasmodium falciparum (Pfa) pfa1245 PF14_0025
Rattus norvegicus (Rno) rno5700 ENSRNOP00000008083
(RGD:1306450)		 B5DEP6
Saccharomyces cerevisiae (Sce) sce869 YDL097C
(S000002255)
Schizosaccharomyces pombe (Spo) spo4864 SPAC23G3.11 Q9P7S2
Yarrowia lipolytica (Yli) yli3082 YALI0D08976g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916327
GO:0005634 nucleus C
IDA
CelWBGene00004462
SpoSPAC23G3.11
TAS
AthAt1g29150
GO:0005829 cytosol C
IDA
SpoSPAC23G3.11
GO:0005838 proteasome regulatory particle C
IDA
DmeFBgn0028689
ISS
DmeFBgn0028689
PfaPF14_0025
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0028689
GO:0008540 proteasome regulatory particle, base
subcomplex		 C
ISS
SpoSPAC23G3.11
GO:0008541 proteasome regulatory particle, lid
subcomplex		 C
IDA
SceS000002255
ISS
AthAt1g29150
DmeFBgn0028689
NAS
DmeFBgn0028689
GO:0034515 proteasome storage granule C
IDA
SceS000002255
GO:0003674 molecular_function F
ND
MmuMGI:1916327
SpoSPAC23G3.11
GO:0004175 endopeptidase activity F
IDA
DmeFBgn0028689
ISS
PfaPF14_0025
GO:0005198 structural molecule activity F
IMP
SceS000002255
GO:0000003 reproduction P
IMP
CelWBGene00004462
GO:0000278 mitotic cell cycle P
IC
SpoSPAC23G3.11
GO:0002119 nematode larval development P
IMP
CelWBGene00004462
GO:0006508 proteolysis P
IDA
DmeFBgn0028689
ISS
DmeFBgn0028689
PfaPF14_0025
RCA
SceS000002255
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000002255
ISS
SpoSPAC23G3.11
TAS
AthAt1g29150
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000002255
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPAC23G3.11
GO:0008150 biological_process P
ND
MmuMGI:1916327
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004462
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004462
GO:0030163 protein catabolic process P
TAS
AthAt1g29150
GO:0043248 proteasome assembly P
IMP
SceS000002255
GO:0046686 response to cadmium ion P
IEP
AthAt1g29150

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC23G3.11
(Q9P7S2)		 YDL097C
(S000002255)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC23G3.11
GO:0005829 cytosol C
IDA
SpoSPAC23G3.11
GO:0008540 proteasome regulatory particle, base
subcomplex		 C
ISS
SpoSPAC23G3.11
GO:0008541 proteasome regulatory particle, lid
subcomplex		 C
IDA
SceS000002255
GO:0034515 proteasome storage granule C
IDA
SceS000002255
GO:0003674 molecular_function F
ND
SpoSPAC23G3.11
GO:0005198 structural molecule activity F
IMP
SceS000002255
GO:0000278 mitotic cell cycle P
IC
SpoSPAC23G3.11
GO:0006508 proteolysis P
RCA
SceS000002255
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000002255
ISS
SpoSPAC23G3.11
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000002255
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPAC23G3.11
GO:0043248 proteasome assembly P
IMP
SceS000002255

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Query species:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk