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Search term: YDL111C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRP42
SGD link S000002269
Alternative ID YDL111C
Description Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp42p (EXOSC7)
Synonyms YDL111C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1612 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Exosomal 3'-5' exoribonuclease complex, subunit Rrp42

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g07750 GI:6648187
Caenorhabditis elegans (Cel) CE15927 GI:17560372
Drosophila melanogaster (Dme) 7303006 GI:7303006
Homo sapiens (Hsa) Hs18545020 GI:18545020
Saccharomyces cerevisiae (Sce) YDL111c
(S000002269)		 GI:6320092 Q12277
Schizosaccharomyces pombe (Spo) SPBC16G5.10 GI:19113551 O60124


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005575 cellular_component C
ND
AthAt3g07750
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
AthAt3g07750
SpoSPBC16G5.10
GO:0003674 molecular_function F
ND
SceS000002269
GO:0003723 RNA binding F
ISS
AthAt3g07750
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000002269
GO:0006364 rRNA processing P
ISS
SpoSPBC16G5.10
GO:0006396 RNA processing P
ISS
AthAt3g07750
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC16G5.10
GO:0016075 rRNA catabolic process P
IMP
SceS000002269
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000002269
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IC
SceS000002269
GO:0043094 cellular metabolic compound salvage P
RCA
SceS000002269
GO:0043628 ncRNA 3'-end processing P
IC
SceS000002269
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000002269
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000002269
GO:0070651 nonfunctional rRNA decay P
IC
SceS000002269
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000002269
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IC
SceS000002269
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000002269

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38594

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RRP42
(S000002269)		 GI:6320092 Q12277
Kluyveromyces lactis (Kla) KLLA0E09185g GI:50308723
Eremothecium gossypii (Ego) AGOS_ADL295W GI:45187578
Magnaporthe grisea (Mgr) MGG_06683 GI:145606074
Neurospora crassa (Ncr) NCU01806.1 GI:32415531


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
GO:0003674 molecular_function F
ND
SceS000002269
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000002269
GO:0016075 rRNA catabolic process P
IMP
SceS000002269
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000002269
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IC
SceS000002269
GO:0043094 cellular metabolic compound salvage P
RCA
SceS000002269
GO:0043628 ncRNA 3'-end processing P
IC
SceS000002269
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000002269
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000002269
GO:0070651 nonfunctional rRNA decay P
IC
SceS000002269
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000002269
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IC
SceS000002269
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000002269

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_13292

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1446 ADL295W
Candida glabrata (Cgl) cgl2516 CAGL0H10384g
Cryptococcus neoformans (Cne) cne1154 180.m00082
Debaryomyces hansenii (Dha) dha6510 DEHA0G18139g
Kluyveromyces lactis (Kla) kla3364 KLLA0E09185g
Neurospora crassa (Ncr) ncr1758 NCU01806.2
Saccharomyces cerevisiae (Sce) sce883 YDL111C
(S000002269)
Schizosaccharomyces pombe (Spo) spo1024 SPBC16G5.10 O60124
Yarrowia lipolytica (Yli) yli3164 YALI0D11000g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC16G5.10
GO:0003674 molecular_function F
ND
SceS000002269
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000002269
GO:0006364 rRNA processing P
ISS
SpoSPBC16G5.10
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC16G5.10
GO:0016075 rRNA catabolic process P
IMP
SceS000002269
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000002269
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IC
SceS000002269
GO:0043094 cellular metabolic compound salvage P
RCA
SceS000002269
GO:0043628 ncRNA 3'-end processing P
IC
SceS000002269
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000002269
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000002269
GO:0070651 nonfunctional rRNA decay P
IC
SceS000002269
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000002269
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IC
SceS000002269
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000002269

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC16G5.10
(O60124)		 YDL111C
(S000002269)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC16G5.10
GO:0003674 molecular_function F
ND
SceS000002269
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IMP
SceS000002269
GO:0006364 rRNA processing P
ISS
SpoSPBC16G5.10
GO:0006402 mRNA catabolic process P
ISS
SpoSPBC16G5.10
GO:0016075 rRNA catabolic process P
IMP
SceS000002269
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000002269
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IC
SceS000002269
GO:0043094 cellular metabolic compound salvage P
RCA
SceS000002269
GO:0043628 ncRNA 3'-end processing P
IC
SceS000002269
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IC
SceS000002269
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IC
SceS000002269
GO:0070651 nonfunctional rRNA decay P
IC
SceS000002269
GO:0071038 nuclear polyadenylation-dependent tRNA catabolic
process		 P
IDA
SceS000002269
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic
process		 P
IC
SceS000002269
GO:0071051 polyadenylation-dependent snoRNA 3'-end
processing		 P
IC
SceS000002269

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GO info in one table:

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