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Search term: YDL116W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NUP84
SGD link S000002274
Alternative ID YDL116W
Description Subunit of the nuclear pore complex (NPC), forms a subcomplex with Nup85p, Nup120p, Nup145p-C, Sec13p, and Seh1p that plays a role in nuclear mRNA export and NPC biogenesis
Synonyms YDL116W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1964 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALINGCELLULAR PROCESSES AND SIGNALING Nuclear pore complex, rNup107 component (sc Nup84)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g14120 GI:15231787
Caenorhabditis elegans (Cel) CE03145
(WBGene00003791)		 GI:17532901 Q19131
Drosophila melanogaster (Dme) 7297751
(Nup107)		 GI:19921114 Q9V466
Homo sapiens (Hsa) Hs9966881
(NUP107)		 GI:9966881 P57740
Saccharomyces cerevisiae (Sce) YDL116w
(S000002274)		 GI:6320087 P52891
Schizosaccharomyces pombe (Spo) SPBC428.01c GI:19111971 Q10331


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC428.01c
GO:0005635 nuclear envelope C
IDA
DmeNup107
GO:0005643 nuclear pore C
IDA
SceS000002274
SpoSPBC428.01c
ISS
DmeNup107
TAS
SpoSPBC428.01c
GO:0005829 cytosol C
IDA
SpoSPBC428.01c
GO:0031080 Nup107-160 complex C
IDA
SceS000002274
SpoSPBC428.01c
GO:0031965 nuclear membrane C
IDA
SpoSPBC428.01c
GO:0003674 molecular_function F
ND
AthAt3g14120
GO:0005198 structural molecule activity F
TAS
SceS000002274
GO:0005515 protein binding F
IPI
SpoSPBC428.01c
GO:0000003 reproduction P
IMP
CelWBGene00003791
GO:0006406 mRNA export from nucleus P
IMP
SceS000002274
GO:0006407 rRNA export from nucleus P
ISS
SpoSPBC428.01c
TAS
SceS000002274
GO:0006408 snRNA export from nucleus P
TAS
SceS000002274
GO:0006409 tRNA export from nucleus P
TAS
SceS000002274
GO:0006607 NLS-bearing substrate import into
nucleus		 P
TAS
SceS000002274
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002274
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus		 P
TAS
SceS000002274
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000002274
GO:0006611 protein export from nucleus P
TAS
SceS000002274
GO:0006913 nucleocytoplasmic transport P
TAS
SpoSPBC428.01c
GO:0006974 response to DNA damage stimulus P
IMP
SceS000002274
GO:0006998 nuclear envelope organization P
IMP
SceS000002274
GO:0006999 nuclear pore organization P
IMP
SceS000002274
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003791
GO:0016973 poly(A)+ mRNA export from nucleus P
IMP
SpoSPBC428.01c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003791
GO:0045184 establishment of protein localization P
RCA
SceS000002274
GO:0050000 chromosome localization P
IMP
SceS000002274

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38589

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) nup107
(SPBC428.01c)		 GI:68009955 Q10331
Saccharomyces cerevisiae (Sce) NUP84
(S000002274)		 GI:6320087 P52891
Kluyveromyces lactis (Kla) KLLA0E09053g GI:50308711
Eremothecium gossypii (Ego) AGOS_ADL289C GI:45187584
Magnaporthe grisea (Mgr) MGG_05736 GI:145615651
Neurospora crassa (Ncr) NCU09814.1 GI:32420041


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC428.01c
GO:0005643 nuclear pore C
IDA
SceS000002274
SpoSPBC428.01c
TAS
SpoSPBC428.01c
GO:0005829 cytosol C
IDA
SpoSPBC428.01c
GO:0031080 Nup107-160 complex C
IDA
SceS000002274
SpoSPBC428.01c
GO:0031965 nuclear membrane C
IDA
SpoSPBC428.01c
GO:0005198 structural molecule activity F
TAS
SceS000002274
GO:0005515 protein binding F
IPI
SpoSPBC428.01c
GO:0006406 mRNA export from nucleus P
IMP
SceS000002274
GO:0006407 rRNA export from nucleus P
ISS
SpoSPBC428.01c
TAS
SceS000002274
GO:0006408 snRNA export from nucleus P
TAS
SceS000002274
GO:0006409 tRNA export from nucleus P
TAS
SceS000002274
GO:0006607 NLS-bearing substrate import into
nucleus		 P
TAS
SceS000002274
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002274
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus		 P
TAS
SceS000002274
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000002274
GO:0006611 protein export from nucleus P
TAS
SceS000002274
GO:0006913 nucleocytoplasmic transport P
TAS
SpoSPBC428.01c
GO:0006974 response to DNA damage stimulus P
IMP
SceS000002274
GO:0006998 nuclear envelope organization P
IMP
SceS000002274
GO:0006999 nuclear pore organization P
IMP
SceS000002274
GO:0016973 poly(A)+ mRNA export from nucleus P
IMP
SpoSPBC428.01c
GO:0045184 establishment of protein localization P
RCA
SceS000002274
GO:0050000 chromosome localization P
IMP
SceS000002274

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_4132

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1452 ADL289C
Candida glabrata (Cgl) cgl2521 CAGL0H10494g
Cryptococcus neoformans (Cne) cne64 162.m02816
Dictyostelium discoideum (Ddi) ddi9407 DDB0186582
Debaryomyces hansenii (Dha) dha6514 DEHA0G18227g
Drosophila melanogaster (Dme) dme1892 CG6743-PA
(FBgn0027868)
Danio rerio (Dre) dre22031 ENSDARP00000040032
(nup107)		 Q5RGI2
Takifugu rubripes (Fru) fru30497 SINFRUP00000153874
Takifugu rubripes (Fru) fru30498 SINFRUP00000153877
Gallus gallus (Gga) gga461 ENSGALP00000016133
(NUP107)
Gallus gallus (Gga) gga462 ENSGALP00000016134
Gallus gallus (Gga) gga463 ENSGALP00000016135
Homo sapiens (Hsa) hsa7841 ENSP00000229179
(NUP107)		 P57740
Kluyveromyces lactis (Kla) kla3358 KLLA0E09053g
Mus musculus (Mmu) mmu2887 ENSMUSP00000063590
(MGI:2143854)		 Q8BH74
Neurospora crassa (Ncr) ncr9558 NCU09814.2
Oryza sativa (Osa) osa25754 3854.m00217
Rattus norvegicus (Rno) rno26808 ENSRNOP00000009203
(RGD:621160)		 P52590
Saccharomyces cerevisiae (Sce) sce889 YDL116W
(S000002274)
Schizosaccharomyces pombe (Spo) spo2490 SPBC428.01c Q10331
Yarrowia lipolytica (Yli) yli3083 YALI0D08998g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC428.01c
GO:0005635 nuclear envelope C
IDA
DmeFBgn0027868
GO:0005643 nuclear pore C
IDA
SceS000002274
SpoSPBC428.01c
ISS
DmeFBgn0027868
TAS
SpoSPBC428.01c
GO:0005829 cytosol C
IDA
SpoSPBC428.01c
GO:0031080 Nup107-160 complex C
IDA
SceS000002274
SpoSPBC428.01c
GO:0031965 nuclear membrane C
IDA
SpoSPBC428.01c
GO:0005198 structural molecule activity F
TAS
SceS000002274
GO:0005515 protein binding F
IPI
SpoSPBC428.01c
GO:0006406 mRNA export from nucleus P
IMP
SceS000002274
GO:0006407 rRNA export from nucleus P
ISS
SpoSPBC428.01c
TAS
SceS000002274
GO:0006408 snRNA export from nucleus P
TAS
SceS000002274
GO:0006409 tRNA export from nucleus P
TAS
SceS000002274
GO:0006607 NLS-bearing substrate import into
nucleus		 P
TAS
SceS000002274
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002274
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus		 P
TAS
SceS000002274
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000002274
GO:0006611 protein export from nucleus P
TAS
SceS000002274
GO:0006913 nucleocytoplasmic transport P
TAS
SpoSPBC428.01c
GO:0006974 response to DNA damage stimulus P
IMP
SceS000002274
GO:0006998 nuclear envelope organization P
IMP
SceS000002274
GO:0006999 nuclear pore organization P
IMP
SceS000002274
GO:0016973 poly(A)+ mRNA export from nucleus P
IMP
SpoSPBC428.01c
GO:0045184 establishment of protein localization P
RCA
SceS000002274
GO:0050000 chromosome localization P
IMP
SceS000002274

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC428.01c
(Q10331)		 YDL116W
(S000002274)