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Search term: YDL130W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPP1B
SGD link S000002288
Alternative ID YDL130W
Description Ribosomal protein P1 beta, component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; accumulation is regulated by phosphorylation and interaction with the P2 stalk component
Synonyms YDL130W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1762 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60s acidic ribosomal protein P1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g01100 GI:15223303
Arabidopsis thaliana (Ath) At3g49460 GI:15229147
Arabidopsis thaliana (Ath) At4g00810 GI:6094103
Arabidopsis thaliana (Ath) At5g24510 GI:15238555
Arabidopsis thaliana (Ath) At5g47700 GI:15238170
Caenorhabditis elegans (Cel) CE26658
(WBGene00004409)		 GI:17509863
Drosophila melanogaster (Dme) 7296207
(FBgn0002593)		 GI:17136320
Homo sapiens (Hsa) Hs17437335 GI:17437335
Homo sapiens (Hsa) Hs17442119 GI:17442119
Homo sapiens (Hsa) Hs17446852 GI:17446852
Homo sapiens (Hsa) Hs18551340 GI:18551340
Homo sapiens (Hsa) Hs18559810 GI:18559810
Homo sapiens (Hsa) Hs18561352 GI:18561352
Homo sapiens (Hsa) Hs18587244 GI:18587244
Homo sapiens (Hsa) Hs18590266 GI:18590266
Homo sapiens (Hsa) Hs18597373 GI:18597373
Homo sapiens (Hsa) Hs22047216 GI:22047216
Homo sapiens (Hsa) Hs4506669
(RPLP1)		 GI:4506669 P05386
Saccharomyces cerevisiae (Sce) YDL081c
(S000002239)		 GI:6320122 P05318
Saccharomyces cerevisiae (Sce) YDL130w
(S000002288)		 GI:6320073 P10622
Schizosaccharomyces pombe (Spo) SPAC644.15 GI:19114795 P17476
Schizosaccharomyces pombe (Spo) SPBC3B9.13c GI:19113463 P17477
Schizosaccharomyces pombe (Spo) SPCP1E11.09c GI:19076062 Q9UU78


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt4g00810
At1g01100
At5g47700
SpoSPCP1E11.09c
GO:0005737 cytoplasm C
IDA
HsaRPLP1
GO:0005811 lipid particle C
IDA
DmeFBgn0002593
GO:0005829 cytosol C
EXP
HsaRPLP1
IDA
AthAt1g01100
At4g00810
At5g47700
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
GO:0005840 ribosome C
ISS
AthAt1g01100
At5g47700
At4g00810
At5g24510
GO:0005886 plasma membrane C
IDA
AthAt1g01100
At5g47700
GO:0022625 cytosolic large ribosomal subunit C
ISS
DmeFBgn0002593
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
NAS
DmeFBgn0002593
TAS
HsaRPLP1
SceS000002239
S000002288
GO:0022626 cytosolic ribosome C
IDA
AthAt4g00810
At5g47700
At3g49460
At5g24510
At1g01100
GO:0003674 molecular_function F
ND
AthAt3g49460
GO:0003723 RNA binding F
TAS
HsaRPLP1
GO:0003735 structural constituent of ribosome F
ISS
AthAt5g47700
At4g00810
At1g01100
At5g24510
DmeFBgn0002593
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
TAS
SceS000002288
S000002239
GO:0005515 protein binding F
IPI
HsaRPLP1
GO:0006412 translation P
ISS
DmeFBgn0002593
TAS
HsaRPLP1
SceS000002288
S000002239
GO:0006414 translational elongation P
EXP
HsaRPLP1
ISS
AthAt4g00810
At5g47700
At5g24510
At1g01100
SceS000002239
S000002288
SpoSPCP1E11.09c
SPBC3B9.13c
SPAC644.15
NAS
DmeFBgn0002593
GO:0008150 biological_process P
ND
AthAt3g49460
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004409
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000002239

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117760

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RPP1B
(S000002288)		 GI:6320073 P10622
Kluyveromyces lactis (Kla) KLLA0F05555g GI:50310623
Eremothecium gossypii (Ego) AGOS_AFR163C GI:45198681


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0022625 cytosolic large ribosomal subunit C
TAS
SceS000002288
GO:0003735 structural constituent of ribosome F
TAS
SceS000002288
GO:0006412 translation P
TAS
SceS000002288
GO:0006414 translational elongation P
ISS
SceS000002288

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_663

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9646 ENSANGP00000022228
Ashbya gossypii (Ago) ago1997 ADR256W
Ashbya gossypii (Ago) ago3355 AFR163C
Arabidopsis thaliana (Ath) ath12 At1g01100.1
Arabidopsis thaliana (Ath) ath13 At1g01100.2
Arabidopsis thaliana (Ath) ath17929 At4g00810.1
Arabidopsis thaliana (Ath) ath17930 At4g00810.2
Arabidopsis thaliana (Ath) ath24715 At5g24510.1
Arabidopsis thaliana (Ath) ath26654 At5g47700.1
Caenorhabditis elegans (Cel) cel18262 Y37E3.7
(CE26658;
WBGene00004409)
Candida glabrata (Cgl) cgl2560 CAGL0I00814g
Cryptococcus neoformans (Cne) cne2351 181.m08384
Dictyostelium discoideum (Ddi) ddi7287 DDB0187726
Dictyostelium discoideum (Ddi) ddi12467 DDB0214917
Debaryomyces hansenii (Dha) dha2706 DEHA0D09284g
Debaryomyces hansenii (Dha) dha6835 DEHA0G25564g
Drosophila melanogaster (Dme) dme94 CG4087-PA
(FBgn0002593)
Danio rerio (Dre) dre20366 ENSDARP00000033600
Takifugu rubripes (Fru) fru15533 SINFRUP00000150008
Gallus gallus (Gga) gga11518 ENSGALP00000026015
(RPLP1)		 P18660
Homo sapiens (Hsa) hsa10846 ENSP00000346037
(RPLP1)		 P05386
Homo sapiens (Hsa) hsa18913 ENSP00000346209
Kluyveromyces lactis (Kla) kla3947 KLLA0E22121g
Kluyveromyces lactis (Kla) kla4332 KLLA0F05555g
Mus musculus (Mmu) mmu27767 ENSMUSP00000008036
(MGI:1927099)		 P47955
Mus musculus (Mmu) mmu26634 ENSMUSP00000073400
Mus musculus (Mmu) mmu17922 ENSMUSP00000076775
Mus musculus (Mmu) mmu25137 ENSMUSP00000077514
Neurospora crassa (Ncr) ncr8733 NCU08960.2
Oryza sativa (Osa) osa19852 3508.m00239
Plasmodium falciparum (Pfa) pfa993 PF11_0043
Rattus norvegicus (Rno) rno12988 ENSRNOP00000015893
(RGD:621774)		 P19944
Rattus norvegicus (Rno) rno28758 ENSRNOP00000018820
(RGD:621774)		 P19944
Rattus norvegicus (Rno) rno31582 ENSRNOP00000033106
(RGD:1565054)
Saccharomyces cerevisiae (Sce) sce851 YDL081C
(S000002239)
Saccharomyces cerevisiae (Sce) sce903 YDL130W
(S000002288)
Schizosaccharomyces pombe (Spo) spo1763 SPAC644.15 P17476
Schizosaccharomyces pombe (Spo) spo2665 SPBC3B9.13c P17477
Schizosaccharomyces pombe (Spo) spo2130 SPCP1E11.09c Q9UU78
Yarrowia lipolytica (Yli) yli1268 YALI0B12804g
Yarrowia lipolytica (Yli) yli1628 YALI0B21252g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1927099
GO:0005634 nucleus C
IDA
AthAt4g00810
At1g01100
At5g47700
SpoSPCP1E11.09c
GO:0005811 lipid particle C
IDA
DmeFBgn0002593
GO:0005829 cytosol C
IDA
AthAt1g01100
At4g00810
At5g47700
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
GO:0005840 ribosome C
ISS
AthAt1g01100
At5g47700
At4g00810
At5g24510
GO:0005886 plasma membrane C
IDA
AthAt1g01100
At5g47700
GO:0015934 large ribosomal subunit C
ISS
PfaPF11_0043
GO:0022625 cytosolic large ribosomal subunit C
ISS
DmeFBgn0002593
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
NAS
DmeFBgn0002593
TAS
SceS000002239
S000002288
GO:0022626 cytosolic ribosome C
IDA
AthAt4g00810
At5g47700
At5g24510
At1g01100
GO:0003674 molecular_function F
ND
MmuMGI:1927099
GO:0003735 structural constituent of ribosome F
ISS
AthAt5g47700
At4g00810
At1g01100
At5g24510
DmeFBgn0002593
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
TAS
SceS000002288
S000002239
GO:0006412 translation P
ISS
DmeFBgn0002593
TAS
SceS000002288
S000002239
GO:0006414 translational elongation P
ISS
AthAt4g00810
At5g47700
At5g24510
At1g01100
SceS000002239
S000002288
SpoSPCP1E11.09c
SPBC3B9.13c
SPAC644.15
NAS
DmeFBgn0002593
GO:0008150 biological_process P
ND
MmuMGI:1927099
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004409
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000002239

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCP1E11.09c
(Q9UU78)		 YDL130W
(S000002288)
SPBC3B9.13c
(P17477)		 YDL130W
(S000002288)
SPAC644.15
(P17476)		 YDL130W
(S000002288)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCP1E11.09c
GO:0005829 cytosol C
IDA
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
TAS
SceS000002288
GO:0003735 structural constituent of ribosome F
ISS
SpoSPAC644.15
SPBC3B9.13c
SPCP1E11.09c
TAS
SceS000002288
GO:0006412 translation P
TAS
SceS000002288
GO:0006414 translational elongation P
ISS
SceS000002288
SpoSPCP1E11.09c
SPBC3B9.13c
SPAC644.15

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GO info in one table:

s.khadayate@ucl.ac.uk