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Search term: YDL140C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPO21
SGD link S000002299
Alternative ID YDL140C
Description RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime
Synonyms YDL140C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0260 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase II, large subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g63020_1 GI:15221663
Arabidopsis thaliana (Ath) At2g40030 GI:15225615
Arabidopsis thaliana (Ath) At4g35800 GI:15233338
Caenorhabditis elegans (Cel) CE28300
(WBGene00000123)
GI:17538180
Drosophila melanogaster (Dme) 7292659
(FBgn0003277)
GI:17530899
Homo sapiens (Hsa) Hs17447982 GI:17447982
Homo sapiens (Hsa) Hs22042356 GI:22042356
Homo sapiens (Hsa) Hs4505939
(POLR2A)
GI:4505939 Q15161
Saccharomyces cerevisiae (Sce) YDL140c
(S000002299)
GI:6320061 P04050
Schizosaccharomyces pombe (Spo) SPBC28F2.12 GI:19112465 P36594
Encephalitozoon cuniculi (Ecu) ECU03g0290 GI:19172989 Q8SSC4
Arabidopsis thaliana (Ath) At1g63020_1 GI:15221663
Arabidopsis thaliana (Ath) At2g40030 GI:15225615
Arabidopsis thaliana (Ath) At4g35800 GI:15233338
Caenorhabditis elegans (Cel) CE28300
(WBGene00000123)
GI:17538180
Drosophila melanogaster (Dme) 7292659
(FBgn0003277)
GI:17530899
Homo sapiens (Hsa) Hs17447982 GI:17447982
Homo sapiens (Hsa) Hs22042356 GI:22042356
Homo sapiens (Hsa) Hs4505939
(POLR2A)
GI:4505939 Q15161
Saccharomyces cerevisiae (Sce) YDL140c
(S000002299)
GI:6320061 P04050
Schizosaccharomyces pombe (Spo) SPBC28F2.12 GI:19112465 P36594
Encephalitozoon cuniculi (Ecu) ECU03g0290 GI:19172989 Q8SSC4
Arabidopsis thaliana (Ath) At1g63020_1 GI:15221663
Arabidopsis thaliana (Ath) At2g40030 GI:15225615
Arabidopsis thaliana (Ath) At4g35800 GI:15233338
Caenorhabditis elegans (Cel) CE28300
(WBGene00000123)
GI:17538180
Drosophila melanogaster (Dme) 7292659
(FBgn0003277)
GI:17530899
Homo sapiens (Hsa) Hs17447982 GI:17447982
Homo sapiens (Hsa) Hs22042356 GI:22042356
Homo sapiens (Hsa) Hs4505939
(POLR2A)
GI:4505939 Q15161
Saccharomyces cerevisiae (Sce) YDL140c
(S000002299)
GI:6320061 P04050
Schizosaccharomyces pombe (Spo) SPBC28F2.12 GI:19112465 P36594
Encephalitozoon cuniculi (Ecu) ECU03g0290 GI:19172989 Q8SSC4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex
C
IPI
AthAt2g40030
At1g63020
GO:0005634 nucleus C
IDA
AthAt2g40030
At1g63020
CelWBGene00000123
HsaPOLR2A
SpoSPBC28F2.12
ISS
AthAt4g35800
At2g40030
At1g63020
NAS
HsaPOLR2A
GO:0005654 nucleoplasm C
EXP
HsaPOLR2A
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IDA
HsaPOLR2A
SceS000002299
IPI
AthAt4g35800
ISS
DmeFBgn0003277
NAS
DmeFBgn0003277
TAS
SpoSPBC28F2.12
GO:0005666 DNA-directed RNA polymerase III
complex
C
RCA
SceS000002299
GO:0005703 polytene chromosome puff C
IDA
DmeFBgn0003277
GO:0005730 nucleolus C
IDA
AthAt2g40030
GO:0005736 DNA-directed RNA polymerase I complex C
RCA
SceS000002299
GO:0005739 mitochondrion C
IDA
SceS000002299
GO:0005773 vacuole C
IDA
AthAt4g35800
GO:0005829 cytosol C
IDA
SpoSPBC28F2.12
GO:0009507 chloroplast C
IDA
AthAt4g35800
GO:0016592 mediator complex C
RCA
SceS000002299
GO:0016604 nuclear body C
IDA
AthAt2g40030
GO:0030880 RNA polymerase complex C
IPI
AthAt2g40030
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt2g40030
GO:0003677 DNA binding F
IDA
SpoSPBC28F2.12
ISS
AthAt2g40030
At4g35800
At1g63020
NAS
HsaPOLR2A
GO:0003702 RNA polymerase II transcription factor
activity
F
RCA
SceS000002299
GO:0003899 DNA-directed RNA polymerase activity F
IC
SpoSPBC28F2.12
IDA
SceS000002299
ISS
AthAt1g63020
At2g40030
At4g35800
CelWBGene00000123
DmeFBgn0003277
NAS
DmeFBgn0003277
HsaPOLR2A
GO:0004672 protein kinase activity F
IDA
HsaPOLR2A
GO:0005515 protein binding F
IPI
HsaPOLR2A
POLR2A
SpoSPBC28F2.12
GO:0016251 general RNA polymerase II transcription factor
activity
F
RCA
SceS000002299
GO:0016455 RNA polymerase II transcription mediator
activity
F
RCA
SceS000002299
GO:0031625 ubiquitin protein ligase binding F
IPI
HsaPOLR2A
GO:0000003 reproduction P
IMP
CelWBGene00000123
GO:0006306 DNA methylation P
IMP
AthAt2g40030
GO:0006346 methylation-dependent chromatin
silencing
P
IMP
AthAt1g63020
GO:0006350 transcription P
IMP
CelWBGene00000123
ISS
AthAt2g40030
At4g35800
At1g63020
GO:0006355 regulation of transcription, DNA-dependent P
NAS
HsaPOLR2A
GO:0006366 transcription from RNA polymerase II
promoter
P
IC
SpoSPBC28F2.12
IDA
HsaPOLR2A
IMP
SceS000002299
ISS
DmeFBgn0003277
NAS
DmeFBgn0003277
HsaPOLR2A
RCA
SceS000002299
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
EXP
HsaPOLR2A
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
EXP
HsaPOLR2A
GO:0006414 translational elongation P
RCA
SceS000002299
GO:0007052 mitotic spindle organization P
IMP
CelWBGene00000123
GO:0007267 cell-cell signaling P
IMP
AthAt1g63020
GO:0007369 gastrulation P
IMP
CelWBGene00000123
GO:0008356 asymmetric cell division P
IMP
CelWBGene00000123
GO:0008380 RNA splicing P
EXP
HsaPOLR2A
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00000123
GO:0010458 exit from mitosis P
IMP
CelWBGene00000123
GO:0010495 long-distance posttranscriptional gene
silencing
P
IMP
AthAt1g63020
GO:0016246 RNA interference P
IMP
AthAt1g63020
GO:0030422 production of siRNA involved in RNA
interference
P
IGI
AthAt1g63020
At2g40030
IMP
AthAt1g63020
At2g40030
GO:0031047 gene silencing by RNA P
IMP
AthAt1g63020
GO:0035194 posttranscriptional gene silencing by
RNA
P
IMP
AthAt2g40030
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00000123
GO:0045941 positive regulation of transcription P
RCA
SceS000002299
GO:0051049 regulation of transport P
RCA
SceS000002299

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
721

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR2A GI:4505939 Q15161
Pan troglodytes (Ptr) POLR2A GI:114666505
Canis familiaris (Cfa) POLR2A GI:73955439
Mus musculus (Mmu) Polr2a
(MGI:98086)
GI:6677795 O08847
Rattus norvegicus (Rno) Polr2a GI:109488292
Drosophila melanogaster (Dme) RpII215
(FBgn0003277)
GI:17530899
Anopheles gambiae (Aga) AgaP_AGAP007810 GI:119112579
Caenorhabditis elegans (Cel) ama-1
(CE28300;
WBGene00000123)
GI:71987878
Schizosaccharomyces pombe (Spo) rpb1
(SPBC28F2.12)
GI:19112465 P36594
Saccharomyces cerevisiae (Sce) RPO21
(S000002299)
GI:6320061 P04050
Kluyveromyces lactis (Kla) KLLA0F05071g GI:50310581
Eremothecium gossypii (Ego) AGOS_ADR086C GI:45187959
Magnaporthe grisea (Mgr) MGG_04652 GI:145614528
Neurospora crassa (Ncr) NCU02103.1 GI:32417630
Arabidopsis thaliana (Ath) NRPB1 GI:15233338
Oryza sativa (Osa) Os05g0151000 GI:115462141
Plasmodium falciparum (Pfa) MAL3P6.20 GI:124505021


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex
C
IPI
AthNRPB1
GO:0005634 nucleus C
IDA
CelWBGene00000123
HsaPOLR2A
SpoSPBC28F2.12
ISO
MmuMGI:98086
ISS
AthNRPB1
NAS
HsaPOLR2A
GO:0005654 nucleoplasm C
EXP
HsaPOLR2A
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IDA
HsaPOLR2A
SceS000002299
IPI
AthNRPB1
ISS
DmeFBgn0003277
NAS
DmeFBgn0003277
TAS
SpoSPBC28F2.12
GO:0005666 DNA-directed RNA polymerase III
complex
C
RCA
SceS000002299
GO:0005703 polytene chromosome puff C
IDA
DmeFBgn0003277
GO:0005736 DNA-directed RNA polymerase I complex C
RCA
SceS000002299
GO:0005739 mitochondrion C
IDA
SceS000002299
GO:0005773 vacuole C
IDA
AthNRPB1
GO:0005829 cytosol C
IDA
SpoSPBC28F2.12
GO:0009507 chloroplast C
IDA
AthNRPB1
GO:0016592 mediator complex C
RCA
SceS000002299
GO:0080137 DNA-directed RNA polymerase V complex C
IDA
AthNRPB1
IPI
AthNRPB1
GO:0003677 DNA binding F
IDA
MmuMGI:98086
SpoSPBC28F2.12
ISS
AthNRPB1
NAS
HsaPOLR2A
GO:0003702 RNA polymerase II transcription factor
activity
F
RCA
SceS000002299
GO:0003899 DNA-directed RNA polymerase activity F
IC
SpoSPBC28F2.12
IDA
SceS000002299
ISS
AthNRPB1
CelWBGene00000123
DmeFBgn0003277
NAS
DmeFBgn0003277
HsaPOLR2A
GO:0004672 protein kinase activity F
IDA
HsaPOLR2A
GO:0005515 protein binding F
IPI
HsaPOLR2A
POLR2A
MmuMGI:98086
SpoSPBC28F2.12
GO:0016251 general RNA polymerase II transcription factor
activity
F
RCA
SceS000002299
GO:0016455 RNA polymerase II transcription mediator
activity
F
RCA
SceS000002299
GO:0031625 ubiquitin protein ligase binding F
IPI
HsaPOLR2A
GO:0000003 reproduction P
IMP
CelWBGene00000123
GO:0006350 transcription P
IMP
CelWBGene00000123
ISS
AthNRPB1
GO:0006355 regulation of transcription, DNA-dependent P
NAS
HsaPOLR2A
GO:0006366 transcription from RNA polymerase II
promoter
P
IC
SpoSPBC28F2.12
IDA
HsaPOLR2A
IMP
SceS000002299
ISS
DmeFBgn0003277
NAS
DmeFBgn0003277
HsaPOLR2A
RCA
SceS000002299
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
EXP
HsaPOLR2A
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
EXP
HsaPOLR2A
GO:0006414 translational elongation P
RCA
SceS000002299
GO:0007052 mitotic spindle organization P
IMP
CelWBGene00000123
GO:0007369 gastrulation P
IMP
CelWBGene00000123
GO:0008356 asymmetric cell division P
IMP
CelWBGene00000123
GO:0008380 RNA splicing P
EXP
HsaPOLR2A
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00000123
GO:0010458 exit from mitosis P
IMP
CelWBGene00000123
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00000123
GO:0045941 positive regulation of transcription P
RCA
SceS000002299
GO:0051049 regulation of transport P
RCA
SceS000002299

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