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Search term: YDL145C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name COP1
SGD link S000002304
Alternative ID YDL145C
Description Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secretory pathway
Synonyms YDL145C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0292 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vesicle coat complex COPI, alpha subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g62020 GI:15220684
Arabidopsis thaliana (Ath) At2g21390 GI:15226538
Caenorhabditis elegans (Cel) CE29136
(WBGene00022119)		 GI:17510485 Q9N4H7
Drosophila melanogaster (Dme) 7292122
(alphaCop)		 GI:17137608
Homo sapiens (Hsa) Hs4758030 GI:4758030
Saccharomyces cerevisiae (Sce) YDL145c
(S000002304)		 GI:6320056 P53622
Schizosaccharomyces pombe (Spo) SPBPJ4664.04 GI:19112071 Q96WV5
Encephalitozoon cuniculi (Ecu) ECU01g1290 GI:19075142
Arabidopsis thaliana (Ath) At1g62020 GI:15220684
Arabidopsis thaliana (Ath) At2g21390 GI:15226538
Caenorhabditis elegans (Cel) CE29136
(WBGene00022119)		 GI:17510485 Q9N4H7
Drosophila melanogaster (Dme) 7292122
(alphaCop)		 GI:17137608
Homo sapiens (Hsa) Hs4758030 GI:4758030
Saccharomyces cerevisiae (Sce) YDL145c
(S000002304)		 GI:6320056 P53622
Schizosaccharomyces pombe (Spo) SPBPJ4664.04 GI:19112071 Q96WV5
Encephalitozoon cuniculi (Ecu) ECU01g1290 GI:19075142
Arabidopsis thaliana (Ath) At1g62020 GI:15220684
Arabidopsis thaliana (Ath) At2g21390 GI:15226538
Caenorhabditis elegans (Cel) CE29136
(WBGene00022119)		 GI:17510485 Q9N4H7
Drosophila melanogaster (Dme) 7292122
(alphaCop)		 GI:17137608
Homo sapiens (Hsa) Hs4758030 GI:4758030
Saccharomyces cerevisiae (Sce) YDL145c
(S000002304)		 GI:6320056 P53622
Schizosaccharomyces pombe (Spo) SPBPJ4664.04 GI:19112071 Q96WV5
Encephalitozoon cuniculi (Ecu) ECU01g1290 GI:19075142


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPBPJ4664.04
GO:0005794 Golgi apparatus C
IDA
SpoSPBPJ4664.04
GO:0005886 plasma membrane C
IDA
AthAt1g62020
GO:0016020 membrane C
IDA
AthAt1g62020
At2g21390
GO:0030126 COPI vesicle coat C
IMP
SceS000002304
ISS
AthAt1g62020
At2g21390
DmealphaCop
SceS000002304
SpoSPBPJ4664.04
NAS
DmealphaCop
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g21390
At1g62020
GO:0003674 molecular_function F
ND
SceS000002304
SpoSPBPJ4664.04
GO:0005215 transporter activity F
ISS
AthAt2g21390
At1g62020
GO:0000003 reproduction P
IMP
CelWBGene00022119
GO:0002119 nematode larval development P
IMP
CelWBGene00022119
GO:0006886 intracellular protein transport P
IC
SpoSPBPJ4664.04
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000002304
ISS
AthAt1g62020
At2g21390
SpoSPBPJ4664.04
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000002304
ISS
DmealphaCop
SpoSPBPJ4664.04
NAS
DmealphaCop
GO:0006911 phagocytosis, engulfment P
IMP
DmealphaCop
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022119
GO:0010883 regulation of lipid storage P
IDA
DmealphaCop
GO:0016192 vesicle-mediated transport P
NAS
DmealphaCop
GO:0032940 secretion by cell P
IMP
CelWBGene00022119
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022119
GO:0040011 locomotion P
IMP
CelWBGene00022119

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3218

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) COPA GI:148536855
Pan troglodytes (Ptr) COPA GI:114560619
Canis familiaris (Cfa) COPA GI:74006305
Mus musculus (Mmu) Copa
(MGI:1334462)		 GI:31981828 Q3TAU7
Gallus gallus (Gga) COPA GI:71897175
Drosophila melanogaster (Dme) alphaCop GI:17137608
Anopheles gambiae (Aga) AgaP_AGAP010251 GI:31236603
Caenorhabditis elegans (Cel) Y71F9AL.17
(CE29136;
WBGene00022119)		 GI:17510485 Q9N4H7
Schizosaccharomyces pombe (Spo) SPBPJ4664.04 GI:19112071 Q96WV5
Saccharomyces cerevisiae (Sce) COP1
(S000002304)		 GI:6320056 P53622
Kluyveromyces lactis (Kla) KLLA0F04884g GI:50310563
Eremothecium gossypii (Ego) AGOS_ADR077C GI:45187950
Magnaporthe grisea (Mgr) MGG_03511 GI:39942862
Neurospora crassa (Ncr) NCU10066.1 GI:32406122
Arabidopsis thaliana (Ath) AT1G62020 GI:15220684
Arabidopsis thaliana (Ath) AT2G21390 GI:15226538
Oryza sativa (Osa) Os09g0127800 GI:115478034
Oryza sativa (Osa) Os03g0711400 GI:115454911
Plasmodium falciparum (Pfa) PFF0330w GI:86170652


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005615 extracellular space C
IDA
HsaCOPA
ISO
MmuMGI:1334462
GO:0005625 soluble fraction C
IDA
HsaCOPA
ISO
MmuMGI:1334462
GO:0005737 cytoplasm C
IDA
HsaCOPA
SpoSPBPJ4664.04
ISO
MmuMGI:1334462
GO:0005792 microsome C
IDA
HsaCOPA
ISO
MmuMGI:1334462
GO:0005794 Golgi apparatus C
IDA
SpoSPBPJ4664.04
GO:0005829 cytosol C
EXP
HsaCOPA
GO:0005886 plasma membrane C
IDA
AthAt1g62020
GO:0016020 membrane C
IDA
AthAt1g62020
At2g21390
GO:0030126 COPI vesicle coat C
IDA
HsaCOPA
IMP
SceS000002304
ISO
MmuMGI:1334462
ISS
AthAt1g62020
At2g21390
DmealphaCop
HsaCOPA
SceS000002304
SpoSPBPJ4664.04
NAS
DmealphaCop
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g21390
At1g62020
GO:0003674 molecular_function F
ND
SceS000002304
SpoSPBPJ4664.04
GO:0005215 transporter activity F
ISS
AthAt2g21390
At1g62020
GO:0000003 reproduction P
IMP
CelWBGene00022119
GO:0002119 nematode larval development P
IMP
CelWBGene00022119
GO:0006886 intracellular protein transport P
IC
SpoSPBPJ4664.04
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000002304
ISS
AthAt1g62020
At2g21390
SpoSPBPJ4664.04
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
EXP
HsaCOPA
IMP
SceS000002304
ISS
DmealphaCop
SpoSPBPJ4664.04
NAS
DmealphaCop
GO:0006911 phagocytosis, engulfment P
IMP
DmealphaCop
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022119
GO:0010883 regulation of lipid storage P
IDA
DmealphaCop
GO:0016044 cellular membrane organization P
EXP
HsaCOPA
GO:0016192 vesicle-mediated transport P
NAS
DmealphaCop
GO:0030157 pancreatic juice secretion P
IDA
HsaCOPA
ISO
MmuMGI:1334462
GO:0032940 secretion by cell P
IMP
CelWBGene00022119
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022119
GO:0040011 locomotion P
IMP
CelWBGene00022119
GO:0048205 COPI coating of Golgi vesicle P
EXP
HsaCOPA

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1308

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12564 ENSANGP00000002872
Ashbya gossypii (Ago) ago1818 ADR077C
Arabidopsis thaliana (Ath) ath5393 At1g62020.1
Arabidopsis thaliana (Ath) ath9034 At2g21390.1
Caenorhabditis elegans (Cel) cel20545 Y71F9AL.17
(CE29136;
WBGene00022119)
Candida glabrata (Cgl) cgl2681 CAGL0I03718g
Cryptococcus neoformans (Cne) cne4142 177.m02900
Dictyostelium discoideum (Ddi) ddi515 DDB0189693
Debaryomyces hansenii (Dha) dha3059 DEHA0D16929g
Drosophila melanogaster (Dme) dme7460 CG7961-PA
(FBgn0025725)
Drosophila melanogaster (Dme) dme7459 CG7961-PB
(FBgn0025725)
Danio rerio (Dre) dre11593 ENSDARP00000011883
Danio rerio (Dre) dre11594 ENSDARP00000021479
Danio rerio (Dre) dre11577 ENSDARP00000042029
Danio rerio (Dre) dre11576 ENSDARP00000048276
(copa)		 Q6JWU9
Danio rerio (Dre) dre11578 ENSDARP00000049605
Encephalitozoon cuniculi (Ecu) ecu1779 19075142
Takifugu rubripes (Fru) fru9570 SINFRUP00000159028
Takifugu rubripes (Fru) fru9572 SINFRUP00000168204
Takifugu rubripes (Fru) fru9571 SINFRUP00000170923
Gallus gallus (Gga) gga24249 ENSGALP00000014893
(COPA)
Homo sapiens (Hsa) hsa2416 ENSP00000241704
(COPA)		 P53621-1
Kluyveromyces lactis (Kla) kla4301 KLLA0F04884g
Mus musculus (Mmu) mmu1509 ENSMUSP00000027833
(MGI:1334462)		 Q8CIE6
Neurospora crassa (Ncr) ncr9799 NCU10066.2
Oryza sativa (Osa) osa45473 5683.m00092
Oryza sativa (Osa) osa50732 5919.m00107
Oryza sativa (Osa) osa497 761.m00060
Oryza sativa (Osa) osa503 761.m00061
Plasmodium falciparum (Pfa) pfa3031 PFF0330w
Rattus norvegicus (Rno) rno9561 ENSRNOP00000008518
(RGD:1310525)		 B5DFK1
Saccharomyces cerevisiae (Sce) sce920 YDL145C
(S000002304)
Schizosaccharomyces pombe (Spo) spo4854 SPBPJ4664.04 Q96WV5
Yarrowia lipolytica (Yli) yli4679 YALI0E19767g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005615 extracellular space C
ISO
MmuMGI:1334462
GO:0005625 soluble fraction C
ISO
MmuMGI:1334462
GO:0005737 cytoplasm C
IDA
SpoSPBPJ4664.04
ISO
MmuMGI:1334462
GO:0005792 microsome C
ISO
MmuMGI:1334462
GO:0005794 Golgi apparatus C
IDA
SpoSPBPJ4664.04
GO:0005886 plasma membrane C
IDA
AthAt1g62020
GO:0016020 membrane C
IDA
AthAt1g62020
At2g21390
GO:0030126 COPI vesicle coat C
IMP
SceS000002304
ISO
MmuMGI:1334462
ISS
AthAt1g62020
At2g21390
DmeFBgn0025725
SceS000002304
SpoSPBPJ4664.04
NAS
DmeFBgn0025725
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g21390
At1g62020
GO:0003674 molecular_function F
ND
SceS000002304
SpoSPBPJ4664.04
GO:0005215 transporter activity F
ISS
AthAt2g21390
At1g62020
GO:0000003 reproduction P
IMP
CelWBGene00022119
GO:0002119 nematode larval development P
IMP
CelWBGene00022119
GO:0006886 intracellular protein transport P
IC
SpoSPBPJ4664.04
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000002304
ISS
AthAt1g62020
At2g21390
SpoSPBPJ4664.04
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000002304
ISS
DmeFBgn0025725
SpoSPBPJ4664.04
NAS
DmeFBgn0025725
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0025725
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022119
GO:0010883 regulation of lipid storage P
IDA
DmeFBgn0025725
GO:0016192 vesicle-mediated transport P
NAS
DmeFBgn0025725
GO:0030157 pancreatic juice secretion P
ISO
MmuMGI:1334462
GO:0032940 secretion by cell P
IMP
CelWBGene00022119
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022119
GO:0040011 locomotion P
IMP
CelWBGene00022119

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBPJ4664.04
(Q96WV5)		 YDL145C
(S000002304)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPBPJ4664.04
GO:0005794 Golgi apparatus C
IDA
SpoSPBPJ4664.04
GO:0030126 COPI vesicle coat C
IMP
SceS000002304
ISS
SceS000002304
SpoSPBPJ4664.04
GO:0003674 molecular_function F
ND
SceS000002304
SpoSPBPJ4664.04
GO:0006886 intracellular protein transport P
IC
SpoSPBPJ4664.04
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000002304
ISS
SpoSPBPJ4664.04
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000002304
ISS
SpoSPBPJ4664.04

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