YOGY Home YOGY Help

Search term: YDL164C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CDC9
SGD link S000002323
Alternative ID YDL164C
Description DNA ligase found in the nucleus and mitochondria, an essential enzyme that joins Okazaki fragments during DNA replication; also acts in nucleotide excision repair, base excision repair, and recombination
Synonyms YDL164C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0967 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent DNA ligase I

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g08130 GI:15223128
Arabidopsis thaliana (Ath) At1g49250 GI:15222077
Arabidopsis thaliana (Ath) At1g66730_2 GI:15219728
Caenorhabditis elegans (Cel) CE05328 GI:17562602
Drosophila melanogaster (Dme) 7291668 GI:7291668
Homo sapiens (Hsa) Hs4557719
(LIG1)		 GI:4557719 P18858
Saccharomyces cerevisiae (Sce) YDL164c
(S000002323)		 GI:6320038 P04819
Schizosaccharomyces pombe (Spo) SPAC20G8.01 GI:19114230 P12000
Schizosaccharomyces pombe (Spo) SPBC713.06 GI:19112137 Q9C1W9
Encephalitozoon cuniculi (Ecu) ECU02g1220 GI:19074041 Q8SSE3
Arabidopsis thaliana (Ath) At1g08130 GI:15223128
Arabidopsis thaliana (Ath) At1g49250 GI:15222077
Arabidopsis thaliana (Ath) At1g66730_2 GI:15219728
Caenorhabditis elegans (Cel) CE05328 GI:17562602
Drosophila melanogaster (Dme) 7291668 GI:7291668
Homo sapiens (Hsa) Hs4557719
(LIG1)		 GI:4557719 P18858
Saccharomyces cerevisiae (Sce) YDL164c
(S000002323)		 GI:6320038 P04819
Schizosaccharomyces pombe (Spo) SPAC20G8.01 GI:19114230 P12000
Schizosaccharomyces pombe (Spo) SPBC713.06 GI:19112137 Q9C1W9
Encephalitozoon cuniculi (Ecu) ECU02g1220 GI:19074041 Q8SSE3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g49250
GO:0005634 nucleus C
IDA
AthAt1g08130
SceS000002323
SpoSPAC20G8.01
SPBC713.06
NAS
SpoSPBC713.06
GO:0005654 nucleoplasm C
EXP
HsaLIG1
GO:0005657 replication fork C
NAS
SceS000002323
GO:0005739 mitochondrion C
IDA
AthAt1g08130
SceS000002323
SpoSPAC20G8.01
IMP
SceS000002323
GO:0043596 nuclear replication fork C
IC
SpoSPAC20G8.01
GO:0003909 DNA ligase activity F
EXP
HsaLIG1
IDA
HsaLIG1
GO:0003910 DNA ligase (ATP) activity F
IDA
SceS000002323
IGI
SpoSPAC20G8.01
ISS
AthAt1g66730
At1g49250
At1g08130
GO:0005515 protein binding F
IPI
SpoSPAC20G8.01
GO:0005524 ATP binding F
ISS
AthAt1g49250
At1g08130
At1g66730
GO:0000278 mitotic cell cycle P
IMP
SceS000002323
GO:0000723 telomere maintenance P
IMP
SpoSPAC20G8.01
GO:0006259 DNA metabolic process P
TAS
HsaLIG1
GO:0006260 DNA replication P
ISS
AthAt1g66730
GO:0006266 DNA ligation P
IDA
SceS000002323
IMP
SceS000002323
GO:0006273 lagging strand elongation P
IDA
SceS000002323
IMP
SceS000002323
TAS
SpoSPAC20G8.01
GO:0006281 DNA repair P
IMP
AthAt1g66730
ISS
AthAt1g66730
TAS
HsaLIG1
GO:0006284 base-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006289 nucleotide-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006297 nucleotide-excision repair, DNA gap
filling		 P
EXP
HsaLIG1
GO:0006310 DNA recombination P
IMP
SceS000002323
ISS
AthAt1g66730
SpoSPAC20G8.01
GO:0007090 regulation of S phase of mitotic cell
cycle		 P
IMP
SpoSPAC20G8.01
GO:0009653 anatomical structure morphogenesis P
TAS
HsaLIG1
GO:0009845 seed germination P
IMP
AthAt1g66730
GO:0043137 DNA replication, removal of RNA
primer		 P
TAS
SpoSPAC20G8.01

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
197

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) LIG1 GI:4557719 P18858
Pan troglodytes (Ptr) LIG1 GI:114678164
Mus musculus (Mmu) Lig1
(MGI:101789)		 GI:133892807 P37913
Rattus norvegicus (Rno) Lig1
(RGD:621424)		 GI:66730439
Drosophila melanogaster (Dme) CG5602
(FBgn0034922)		 GI:24762424
Anopheles gambiae (Aga) AgaP_AGAP009222 GI:158299989
Caenorhabditis elegans (Cel) lig-1
(CE37480;
WBGene00002985)		 GI:71985269
Schizosaccharomyces pombe (Spo) cdc17
(SPAC20G8.01)		 GI:63054532 P12000
Saccharomyces cerevisiae (Sce) CDC9
(S000002323)		 GI:6320038 P04819
Kluyveromyces lactis (Kla) KLLA0D12496g GI:50307281
Eremothecium gossypii (Ego) AGOS_ACL155W GI:45185533
Magnaporthe grisea (Mgr) MGG_06370 GI:145608794
Neurospora crassa (Ncr) NCU06481.1 GI:32411711
Arabidopsis thaliana (Ath) ATLIG1 GI:30680522
Arabidopsis thaliana (Ath) AT1G49250 GI:15222077
Oryza sativa (Osa) Os10g0489200 GI:115482648
Plasmodium falciparum (Pfa) MAL13P1.22 GI:124512824


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g49250
GO:0005634 nucleus C
IDA
AthATLIG1
SceS000002323
SpoSPAC20G8.01
ISO
MmuMGI:101789
GO:0005654 nucleoplasm C
EXP
HsaLIG1
GO:0005657 replication fork C
ISS
PfaMAL13P1.22
NAS
SceS000002323
GO:0005739 mitochondrion C
IDA
AthATLIG1
SceS000002323
SpoSPAC20G8.01
IMP
SceS000002323
GO:0020011 apicoplast C
ISS
PfaMAL13P1.22
GO:0043596 nuclear replication fork C
IC
SpoSPAC20G8.01
GO:0003909 DNA ligase activity F
EXP
HsaLIG1
IDA
HsaLIG1
ISO
MmuMGI:101789
GO:0003910 DNA ligase (ATP) activity F
IDA
SceS000002323
IGI
SpoSPAC20G8.01
ISS
AthAt1g49250
ATLIG1
DmeFBgn0034922
GO:0005515 protein binding F
IPI
SpoSPAC20G8.01
GO:0005524 ATP binding F
ISS
AthAt1g49250
ATLIG1
GO:0000278 mitotic cell cycle P
IMP
SceS000002323
GO:0000723 telomere maintenance P
IMP
SpoSPAC20G8.01
GO:0000910 cytokinesis P
IMP
CelWBGene00002985
GO:0006259 DNA metabolic process P
TAS
HsaLIG1
GO:0006260 DNA replication P
IMP
MmuMGI:101789
GO:0006266 DNA ligation P
IDA
SceS000002323
IMP
SceS000002323
ISS
PfaMAL13P1.22
GO:0006273 lagging strand elongation P
IDA
SceS000002323
IMP
SceS000002323
ISS
PfaMAL13P1.22
TAS
SpoSPAC20G8.01
GO:0006281 DNA repair P
ISO
MmuMGI:101789
TAS
HsaLIG1
GO:0006284 base-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006289 nucleotide-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006297 nucleotide-excision repair, DNA gap
filling		 P
EXP
HsaLIG1
GO:0006310 DNA recombination P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00002985
GO:0007090 regulation of S phase of mitotic cell
cycle		 P
IMP
SpoSPAC20G8.01
GO:0009653 anatomical structure morphogenesis P
TAS
HsaLIG1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00002985
GO:0043137 DNA replication, removal of RNA
primer		 P
TAS
SpoSPAC20G8.01
GO:0051301 cell division P
IMP
CelWBGene00002985

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_716

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11355 ENSANGP00000010547
Ashbya gossypii (Ago) ago894 ACL155W
Arabidopsis thaliana (Ath) ath817 At1g08130.1
Arabidopsis thaliana (Ath) ath4197 At1g49250.1
Caenorhabditis elegans (Cel) cel2949 C29A12.3a
(CE37480;
WBGene00002985)
Candida glabrata (Cgl) cgl2667 CAGL0I03410g
Cryptococcus neoformans (Cne) cne8 162.m02936
Cryptococcus neoformans (Cne) cne2281 181.m08304
Dictyostelium discoideum (Ddi) ddi3836 DDB0167703
Debaryomyces hansenii (Dha) dha387 DEHA0A08734g
Drosophila melanogaster (Dme) dme6856 CG5602-PA
(FBgn0034922)
Danio rerio (Dre) dre11718 ENSDARP00000023856
Danio rerio (Dre) dre11719 ENSDARP00000045227
Danio rerio (Dre) dre11720 ENSDARP00000047130
Danio rerio (Dre) dre11725 ENSDARP00000047980
Danio rerio (Dre) dre11724 ENSDARP00000049302
Danio rerio (Dre) dre11721 ENSDARP00000049772
Encephalitozoon cuniculi (Ecu) ecu120 19074041
Gallus gallus (Gga) gga26443 ENSGALP00000021794
Gallus gallus (Gga) gga26444 ENSGALP00000021795
Gallus gallus (Gga) gga26445 ENSGALP00000021796
Homo sapiens (Hsa) hsa16729 ENSP00000263274
(LIG1)		 P18858
Kluyveromyces lactis (Kla) kla2618 KLLA0D12496g
Mus musculus (Mmu) mmu30921 ENSMUSP00000066533
Neurospora crassa (Ncr) ncr6299 NCU06481.2
Neurospora crassa (Ncr) ncr9450 NCU09706.2
Oryza sativa (Osa) osa5174 2177.m00129
Oryza sativa (Osa) osa87981 9535.m00064
Plasmodium falciparum (Pfa) pfa3962 MAL13P1.22
Rattus norvegicus (Rno) rno1069 ENSRNOP00000019799
(RGD:621424)
Saccharomyces cerevisiae (Sce) sce942 YDL164C
(S000002323)
Schizosaccharomyces pombe (Spo) spo4772 SPAC20G8.01 P12000
Schizosaccharomyces pombe (Spo) spo2774 SPBC713.06 Q9C1W9
Yarrowia lipolytica (Yli) yli5377 YALI0F01034g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g49250
GO:0005634 nucleus C
IDA
AthAt1g08130
SceS000002323
SpoSPAC20G8.01
SPBC713.06
NAS
SpoSPBC713.06
GO:0005657 replication fork C
ISS
PfaMAL13P1.22
NAS
SceS000002323
GO:0005739 mitochondrion C
IDA
AthAt1g08130
SceS000002323
SpoSPAC20G8.01
IMP
SceS000002323
GO:0020011 apicoplast C
ISS
PfaMAL13P1.22
GO:0043596 nuclear replication fork C
IC
SpoSPAC20G8.01
GO:0003910 DNA ligase (ATP) activity F
IDA
SceS000002323
IGI
SpoSPAC20G8.01
ISS
AthAt1g49250
At1g08130
DmeFBgn0034922
GO:0005515 protein binding F
IPI
SpoSPAC20G8.01
GO:0005524 ATP binding F
ISS
AthAt1g49250
At1g08130
GO:0000278 mitotic cell cycle P
IMP
SceS000002323
GO:0000723 telomere maintenance P
IMP
SpoSPAC20G8.01
GO:0000910 cytokinesis P
IMP
CelWBGene00002985
GO:0006266 DNA ligation P
IDA
SceS000002323
IMP
SceS000002323
ISS
PfaMAL13P1.22
GO:0006273 lagging strand elongation P
IDA
SceS000002323
IMP
SceS000002323
ISS
PfaMAL13P1.22
TAS
SpoSPAC20G8.01
GO:0006284 base-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006289 nucleotide-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006310 DNA recombination P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00002985
GO:0007090 regulation of S phase of mitotic cell
cycle		 P
IMP
SpoSPAC20G8.01
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00002985
GO:0043137 DNA replication, removal of RNA
primer		 P
TAS
SpoSPAC20G8.01
GO:0051301 cell division P
IMP
CelWBGene00002985

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC713.06
(Q9C1W9)		 YDL164C
(S000002323)
SPAC20G8.01
(P12000)		 YDL164C
(S000002323)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002323
SpoSPAC20G8.01
SPBC713.06
NAS
SpoSPBC713.06
GO:0005657 replication fork C
NAS
SceS000002323
GO:0005739 mitochondrion C
IDA
SceS000002323
SpoSPAC20G8.01
IMP
SceS000002323
GO:0043596 nuclear replication fork C
IC
SpoSPAC20G8.01
GO:0003910 DNA ligase (ATP) activity F
IDA
SceS000002323
IGI
SpoSPAC20G8.01
GO:0005515 protein binding F
IPI
SpoSPAC20G8.01
GO:0000278 mitotic cell cycle P
IMP
SceS000002323
GO:0000723 telomere maintenance P
IMP
SpoSPAC20G8.01
GO:0006266 DNA ligation P
IDA
SceS000002323
IMP
SceS000002323
GO:0006273 lagging strand elongation P
IDA
SceS000002323
IMP
SceS000002323
TAS
SpoSPAC20G8.01
GO:0006284 base-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006289 nucleotide-excision repair P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0006310 DNA recombination P
IMP
SceS000002323
ISS
SpoSPAC20G8.01
GO:0007090 regulation of S phase of mitotic cell
cycle		 P
IMP
SpoSPAC20G8.01
GO:0043137 DNA replication, removal of RNA
primer		 P
TAS
SpoSPAC20G8.01

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk