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Search term: YDR012W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL4B
SGD link S000002419
Alternative ID YDR012W
Description Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins
Synonyms YDR012W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1475 AC-HYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Ribosomal protein RPL1/RPL2/RL4L4

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g09630 GI:15232723
Arabidopsis thaliana (Ath) At5g02870 GI:15242558
Caenorhabditis elegans (Cel) CE07669
(WBGene00004415)
GI:17508669 O02056
Homo sapiens (Hsa) Hs14741953 GI:14741953
Homo sapiens (Hsa) Hs16579885
(RPL4)
GI:16579885 P36578
Homo sapiens (Hsa) Hs17437314 GI:17437314
Homo sapiens (Hsa) Hs17438781 GI:17438781
Homo sapiens (Hsa) Hs17446088 GI:17446088
Homo sapiens (Hsa) Hs18583527_2 GI:18583527
Homo sapiens (Hsa) Hs22041852 GI:22041852
Saccharomyces cerevisiae (Sce) YBR031w
(S000000235)
GI:6319505 P10664
Saccharomyces cerevisiae (Sce) YDR012w
(S000002419)
GI:6320215 P49626
Schizosaccharomyces pombe (Spo) SPBC1711.06 GI:19112671 Q9P784
Schizosaccharomyces pombe (Spo) SPBP8B7.03c GI:19113302 P35679
Encephalitozoon cuniculi (Ecu) ECU08g0830 GI:19173410 Q8SRC2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthAt3g09630
GO:0005730 nucleolus C
IDA
AthAt3g09630
At5g02870
GO:0005737 cytoplasm C
IDA
SceS000002419
GO:0005773 vacuole C
IDA
AthAt5g02870
At3g09630
GO:0005829 cytosol C
EXP
HsaRPL4
IDA
SpoSPBC1711.06
GO:0005840 ribosome C
ISS
AthAt3g09630
GO:0005886 plasma membrane C
IDA
AthAt5g02870
At3g09630
GO:0009507 chloroplast C
IDA
AthAt5g02870
At3g09630
GO:0015934 large ribosomal subunit C
ISS
AthAt5g02870
GO:0016020 membrane C
IDA
AthAt5g02870
At3g09630
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt5g02870
At3g09630
ISS
SpoSPBC1711.06
SPBP8B7.03c
TAS
HsaRPL4
SceS000000235
S000002419
GO:0022626 cytosolic ribosome C
IDA
AthAt5g02870
At3g09630
GO:0030529 ribonucleoprotein complex C
IDA
HsaRPL4
GO:0003723 RNA binding F
TAS
HsaRPL4
GO:0003735 structural constituent of ribosome F
ISS
AthAt5g02870
At3g09630
SpoSPBP8B7.03c
SPBC1711.06
TAS
SceS000002419
S000000235
GO:0005515 protein binding F
IPI
HsaRPL4
GO:0000003 reproduction P
IMP
CelWBGene00004415
GO:0006412 translation P
ISS
AthAt5g02870
At3g09630
SpoSPBC1711.06
SPBP8B7.03c
TAS
HsaRPL4
SceS000000235
S000002419
GO:0006414 translational elongation P
EXP
HsaRPL4
GO:0006417 regulation of translation P
RCA
SceS000002419
S000000235
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004415
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004415

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
113609

Species Gene ID NCBI link UniProt link
Canis familiaris (Cfa) LOC478348 GI:57108289
Canis familiaris (Cfa) LOC609491 GI:74000590
Canis familiaris (Cfa) LOC610395 GI:73997307
Canis familiaris (Cfa) LOC608310 GI:73993914
Schizosaccharomyces pombe (Spo) rpl4
(SPBC1711.06)
GI:19112671 Q9P784
Schizosaccharomyces pombe (Spo) rpl4
(SPBC1711.06)
GI:19113302 Q9P784
Saccharomyces cerevisiae (Sce) RPL4A
(S000000235)
GI:6319505 P10664
Saccharomyces cerevisiae (Sce) RPL4B
(S000002419)
GI:6320215 P49626
Kluyveromyces lactis (Kla) KLLA0B07139g GI:50303803
Eremothecium gossypii (Ego) AGOS_AAR191C GI:45185016
Magnaporthe grisea (Mgr) MGG_08190 GI:39946140
Neurospora crassa (Ncr) NCU03757.1 GI:32404892


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000002419
GO:0005829 cytosol C
IDA
SpoSPBC1711.06
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPBC1711.06
TAS
SceS000000235
S000002419
GO:0003735 structural constituent of ribosome F
ISS
SpoSPBC1711.06
TAS
SceS000002419
S000000235
GO:0006412 translation P
ISS
SpoSPBC1711.06
TAS
SceS000000235
S000002419
GO:0006417 regulation of translation P
RCA
SceS000002419
S000000235

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1047

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga4458 ENSANGP00000020662
Ashbya gossypii (Ago) ago379 AAR191C
Arabidopsis thaliana (Ath) ath13042 At3g09630.1
Arabidopsis thaliana (Ath) ath22439 At5g02870.1
Caenorhabditis elegans (Cel) cel115 B0041.4
(CE07669;
WBGene00004415)
Candida glabrata (Cgl) cgl389 CAGL0B04257g
Cryptococcus neoformans (Cne) cne3944 185.m02536
Dictyostelium discoideum (Ddi) ddi12789 DDB0231241
Debaryomyces hansenii (Dha) dha733 DEHA0B01210g
Drosophila melanogaster (Dme) dme14833 CG5502-PA
(FBgn0003279)
Danio rerio (Dre) dre9108 ENSDARP00000016801
Encephalitozoon cuniculi (Ecu) ecu241 19173410
Takifugu rubripes (Fru) fru8679 SINFRUP00000137183
Gallus gallus (Gga) gga4174 ENSGALP00000012481
(RPL4)
Q5ZII1
Homo sapiens (Hsa) hsa10812 ENSP00000311430
(RPL4)
P36578
Homo sapiens (Hsa) hsa10813 ENSP00000346035
Kluyveromyces lactis (Kla) kla846 KLLA0B07139g
Mus musculus (Mmu) mmu27792 ENSMUSP00000034966
(MGI:1915141)
Q9D8E6
Neurospora crassa (Ncr) ncr3647 NCU03757.2
Oryza sativa (Osa) osa20505 3557.m00140
Oryza sativa (Osa) osa63558 6739.m00166
Oryza sativa (Osa) osa78053 7482.m00155
Oryza sativa (Osa) osa87423 9232.m00096
Oryza sativa (Osa) osa87401 9551.m00143
Plasmodium falciparum (Pfa) pfa3521 PFE0350c
Rattus norvegicus (Rno) rno28784 ENSRNOP00000013462
(RGD:619824)
P50878
Saccharomyces cerevisiae (Sce) sce284 YBR031W
(S000000235)
Saccharomyces cerevisiae (Sce) sce1042 YDR012W
(S000002419)
Schizosaccharomyces pombe (Spo) spo4092 SPBC1711.06 Q9P784
Schizosaccharomyces pombe (Spo) spo3555 SPBP8B7.03c P35679
Yarrowia lipolytica (Yli) yli1995 YALI0C06820g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthAt3g09630
GO:0005730 nucleolus C
IDA
AthAt3g09630
At5g02870
GO:0005737 cytoplasm C
IDA
SceS000002419
GO:0005773 vacuole C
IDA
AthAt5g02870
At3g09630
GO:0005811 lipid particle C
IDA
DmeFBgn0003279
GO:0005829 cytosol C
IDA
SpoSPBC1711.06
GO:0005840 ribosome C
ISS
AthAt3g09630
GO:0005886 plasma membrane C
IDA
AthAt5g02870
At3g09630
GO:0009507 chloroplast C
IDA
AthAt5g02870
At3g09630
GO:0015934 large ribosomal subunit C
ISO
MmuMGI:1915141
ISS
AthAt5g02870
PfaPFE0350c
GO:0016020 membrane C
IDA
AthAt5g02870
At3g09630
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt5g02870
At3g09630
ISS
DmeFBgn0003279
SpoSPBC1711.06
SPBP8B7.03c
TAS
SceS000000235
S000002419
GO:0022626 cytosolic ribosome C
IDA
AthAt5g02870
At3g09630
GO:0030529 ribonucleoprotein complex C
ISO
MmuMGI:1915141
GO:0003723 RNA binding F
ISS
PfaPFE0350c
GO:0003735 structural constituent of ribosome F
ISS
AthAt5g02870
At3g09630
DmeFBgn0003279
SpoSPBP8B7.03c
SPBC1711.06
TAS
SceS000002419
S000000235
GO:0005515 protein binding F
IPI
MmuMGI:1915141
GO:0000003 reproduction P
IMP
CelWBGene00004415
GO:0006412 translation P
ISS
AthAt5g02870
At3g09630
DmeFBgn0003279
SpoSPBC1711.06
SPBP8B7.03c
TAS
SceS000000235
S000002419
GO:0006417 regulation of translation P
RCA
SceS000002419
S000000235
GO:0008150 biological_process P
ND
MmuMGI:1915141
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00004415
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004415

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBP8B7.03c
(P35679)
YDR012W
(S000002419)
SPBC1711.06
(Q9P784)
YDR012W
(S000002419)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000002419
GO:0005829 cytosol C
IDA
SpoSPBC1711.06
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPBC1711.06
SPBP8B7.03c
TAS
SceS000002419
GO:0003735 structural constituent of ribosome F
ISS
SpoSPBP8B7.03c
SPBC1711.06
TAS
SceS000002419
GO:0006412 translation P
ISS
SpoSPBC1711.06
SPBP8B7.03c
TAS
SceS000002419
GO:0006417 regulation of translation P
RCA
SceS000002419

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk