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Search term: YDR045C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPC11
SGD link S000002452
Alternative ID YDR045C
Description RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription; homologous to TFIIS
Synonyms YDR045C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2906 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase III subunit C11

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g01210 GI:15223344
Arabidopsis thaliana (Ath) At4g07950 GI:15235876
Caenorhabditis elegans (Cel) CE25620
(WBGene00022309)		 GI:17544244 Q9N4B7
Drosophila melanogaster (Dme) 7302348 GI:7302348
Homo sapiens (Hsa) Hs22059374_1 GI:22059374
Homo sapiens (Hsa) Hs7706499
(POLR3K)		 GI:7706499 Q9Y2Y1
Saccharomyces cerevisiae (Sce) YDR045c
(S000002452)		 GI:6320250 Q04307
Schizosaccharomyces pombe (Spo) SPAC22A12.05 GI:19114147 O13896
Encephalitozoon cuniculi (Ecu) ECU03g0490 GI:19173009 Q8SSB3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt4g07950
HsaPOLR3K
SpoSPAC22A12.05
ISS
AthAt4g07950
At1g01210
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000002452
TAS
HsaPOLR3K
SpoSPAC22A12.05
GO:0005737 cytoplasm C
IDA
AthAt4g07950
HsaPOLR3K
GO:0005829 cytosol C
IDA
SpoSPAC22A12.05
GO:0003677 DNA binding F
ISS
AthAt4g07950
At1g01210
SpoSPAC22A12.05
GO:0003700 transcription factor activity F
ISS
AthAt4g07950
At1g01210
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000002452
IMP
SceS000002452
ISS
AthAt4g07950
At1g01210
TAS
SpoSPAC22A12.05
GO:0006354 RNA elongation P
ISS
AthAt4g07950
At1g01210
GO:0006355 regulation of transcription, DNA-dependent P
ISS
AthAt1g01210
At4g07950
GO:0006383 transcription from RNA polymerase III
promoter		 P
RCA
SceS000002452
TAS
HsaPOLR3K
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
TAS
SpoSPAC22A12.05
GO:0006386 termination of RNA polymerase III
transcription		 P
IMP
SceS000002452
GO:0042779 tRNA 3'-trailer cleavage P
IGI
SpoSPAC22A12.05
IMP
SpoSPAC22A12.05
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IMP
SceS000002452

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
5610

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR3K GI:7706499 Q9Y2Y1
Pan troglodytes (Ptr) POLR3K GI:114660088
Canis familiaris (Cfa) POLR3K GI:73959879
Mus musculus (Mmu) Polr3k
(MGI:1914255)		 GI:13385394 Q3TSW1
Rattus norvegicus (Rno) Polr3k GI:62079253
Gallus gallus (Gga) POLR3K GI:118098131
Drosophila melanogaster (Dme) CG33785
(FBgn0061362)		 GI:78707272
Caenorhabditis elegans (Cel) Y77E11A.6
(CE25620;
WBGene00022309)		 GI:17544244 Q9N4B7
Schizosaccharomyces pombe (Spo) rpc11
(SPAC22A12.05)		 GI:19114147 O13896
Saccharomyces cerevisiae (Sce) RPC11
(S000002452)		 GI:6320250 Q04307
Kluyveromyces lactis (Kla) KLLA0F18568g GI:50311767
Eremothecium gossypii (Ego) AGOS_AGR029W GI:45201124
Magnaporthe grisea (Mgr) MGG_03072 GI:39971211
Neurospora crassa (Ncr) NCU00570.1 GI:32408537
Arabidopsis thaliana (Ath) AT1G01210 GI:15223344
Arabidopsis thaliana (Ath) AT4G07950 GI:15235876
Oryza sativa (Osa) Os02g0672700 GI:115447857


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt4g07950
HsaPOLR3K
SpoSPAC22A12.05
ISS
AthAt4g07950
At1g01210
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000002452
ISS
DmeFBgn0061362
TAS
HsaPOLR3K
SpoSPAC22A12.05
GO:0005737 cytoplasm C
IDA
AthAt4g07950
HsaPOLR3K
GO:0005829 cytosol C
IDA
SpoSPAC22A12.05
GO:0003677 DNA binding F
ISS
AthAt4g07950
At1g01210
SpoSPAC22A12.05
GO:0003700 transcription factor activity F
ISS
AthAt4g07950
At1g01210
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000002452
IMP
SceS000002452
ISS
AthAt4g07950
At1g01210
DmeFBgn0061362
TAS
SpoSPAC22A12.05
GO:0006354 RNA elongation P
ISS
AthAt4g07950
At1g01210
GO:0006355 regulation of transcription, DNA-dependent P
ISS
AthAt1g01210
At4g07950
GO:0006359 regulation of transcription from RNA polymerase
III promoter		 P
ISS
DmeFBgn0061362
GO:0006383 transcription from RNA polymerase III
promoter		 P
RCA
SceS000002452
TAS
HsaPOLR3K
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
TAS
SpoSPAC22A12.05
GO:0006386 termination of RNA polymerase III
transcription		 P
IMP
SceS000002452
GO:0042779 tRNA 3'-trailer cleavage P
IGI
SpoSPAC22A12.05
IMP
SpoSPAC22A12.05
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IMP
SceS000002452

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2036

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2823 ENSANGP00000018390
Ashbya gossypii (Ago) ago4339 AGR029W
Arabidopsis thaliana (Ath) ath26 At1g01210.1
Arabidopsis thaliana (Ath) ath18521 At4g07950.1
Caenorhabditis elegans (Cel) cel20913 Y77E11A.6
(CE25620;
WBGene00022309)
Candida glabrata (Cgl) cgl2432 CAGL0H08415g
Cryptococcus neoformans (Cne) cne4166 177.m02925
Dictyostelium discoideum (Ddi) ddi12995 DDB0216317
Debaryomyces hansenii (Dha) dha4704 DEHA0F07216g
Drosophila melanogaster (Dme) dme6204 CG33005-PA
Encephalitozoon cuniculi (Ecu) ecu416 19173009
Takifugu rubripes (Fru) fru8576 SINFRUP00000147705
Gallus gallus (Gga) gga26195 ENSGALP00000028320
(POLR3K)
Homo sapiens (Hsa) hsa11313 ENSP00000293860
(POLR3K)		 Q9Y2Y1
Kluyveromyces lactis (Kla) kla4912 KLLA0F18568g
Mus musculus (Mmu) mmu16324 ENSMUSP00000044582
(MGI:1914255)		 Q9CQZ7
Neurospora crassa (Ncr) ncr554 NCU00570.2
Plasmodium falciparum (Pfa) pfa12 PFB0290c
Rattus norvegicus (Rno) rno20555 ENSRNOP00000024096
(RGD:1587294)		 Q5FVH1
Saccharomyces cerevisiae (Sce) sce1079 YDR045C
(S000002452)
Schizosaccharomyces pombe (Spo) spo4957 SPAC22A12.05 O13896
Yarrowia lipolytica (Yli) yli3640 YALI0D22308g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt4g07950
SpoSPAC22A12.05
ISS
AthAt4g07950
At1g01210
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000002452
ISS
PfaPFB0290c
TAS
SpoSPAC22A12.05
GO:0005737 cytoplasm C
IDA
AthAt4g07950
GO:0005829 cytosol C
IDA
SpoSPAC22A12.05
GO:0003677 DNA binding F
ISS
AthAt4g07950
At1g01210
SpoSPAC22A12.05
GO:0003700 transcription factor activity F
ISS
AthAt4g07950
At1g01210
PfaPFB0290c
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000002452
IMP
SceS000002452
ISS
AthAt4g07950
At1g01210
TAS
SpoSPAC22A12.05
GO:0006354 RNA elongation P
ISS
AthAt4g07950
At1g01210
GO:0006355 regulation of transcription, DNA-dependent P
ISS
AthAt1g01210
At4g07950
GO:0006383 transcription from RNA polymerase III
promoter		 P
ISS
PfaPFB0290c
RCA
SceS000002452
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
TAS
SpoSPAC22A12.05
GO:0006386 termination of RNA polymerase III
transcription		 P
IMP
SceS000002452
GO:0042779 tRNA 3'-trailer cleavage P
IGI
SpoSPAC22A12.05
IMP
SpoSPAC22A12.05
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IMP
SceS000002452

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC22A12.05
(O13896)		 YDR045C
(S000002452)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22A12.05
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000002452
TAS
SpoSPAC22A12.05
GO:0005829 cytosol C
IDA
SpoSPAC22A12.05
GO:0003677 DNA binding F
ISS
SpoSPAC22A12.05
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000002452
IMP
SceS000002452
TAS
SpoSPAC22A12.05
GO:0006383 transcription from RNA polymerase III
promoter		 P
RCA
SceS000002452
GO:0006384 transcription initiation from RNA polymerase III
promoter		 P
TAS
SpoSPAC22A12.05
GO:0006386 termination of RNA polymerase III
transcription		 P
IMP
SceS000002452
GO:0042779 tRNA 3'-trailer cleavage P
IGI
SpoSPAC22A12.05
IMP
SpoSPAC22A12.05
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IMP
SceS000002452

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