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Search term: YDR088C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SLU7
SGD link S000002495
Alternative ID YDR088C
Description RNA splicing factor, required for ATP-independent portion of 2nd catalytic step of spliceosomal RNA splicing; interacts with Prp18p; contains zinc knuckle domain
Synonyms YDR088C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2560 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA splicing factor - Slu7p

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g65660 GI:15218775
Arabidopsis thaliana (Ath) At3g45950 GI:15231289
Arabidopsis thaliana (Ath) At4g37120 GI:4006865
Caenorhabditis elegans (Cel) CE06116
(WBGene00010629)		 GI:17562300 Q21278
Drosophila melanogaster (Dme) 7301733 GI:7301733
Homo sapiens (Hsa) Hs20127501 GI:20127501
Saccharomyces cerevisiae (Sce) YDR088c
(S000002495)		 GI:6320293 Q02775
Schizosaccharomyces pombe (Spo) SPBC365.05c GI:19112826 Q9Y7Y2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g45950
At4g37120
At1g65660
GO:0005634 nucleus C
IDA
SpoSPBC365.05c
GO:0005681 spliceosomal complex C
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0000386 second spliceosomal transesterification
activity		 F
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0003676 nucleic acid binding F
ISS
AthAt1g65660
GO:0003727 single-stranded RNA binding F
TAS
AthAt4g37120
At1g65660
GO:0000003 reproduction P
IMP
CelWBGene00010629
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0002119 nematode larval development P
IMP
CelWBGene00010629
GO:0008150 biological_process P
ND
AthAt3g45950
GO:0008284 positive regulation of cell proliferation P
IGI
AthAt4g37120
IMP
AthAt1g65660
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00010629
GO:0008380 RNA splicing P
TAS
AthAt4g37120
At1g65660
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010629
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00010629
GO:0040007 growth P
IMP
CelWBGene00010629
GO:0040011 locomotion P
IMP
CelWBGene00010629

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48623

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SLU7
(S000002495)		 GI:6320293 Q02775
Kluyveromyces lactis (Kla) KLLA0F14531g GI:50311417


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005681 spliceosomal complex C
IDA
SceS000002495
GO:0000386 second spliceosomal transesterification
activity		 F
IDA
SceS000002495
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IDA
SceS000002495

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2070

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga112 ENSANGP00000003410
Ashbya gossypii (Ago) ago4470 AGR159C
Arabidopsis thaliana (Ath) ath5787 At1g65660.1
Arabidopsis thaliana (Ath) ath15874 At3g45950.1
Arabidopsis thaliana (Ath) ath21891 At4g37120.1
Caenorhabditis elegans (Cel) cel12115 K07C5.6
(CE06116;
WBGene00010629)
Candida glabrata (Cgl) cgl2276 CAGL0H04917g
Cryptococcus neoformans (Cne) cne854 163.m06198
Dictyostelium discoideum (Ddi) ddi4649 DDB0204278
Debaryomyces hansenii (Dha) dha4611 DEHA0F04983g
Drosophila melanogaster (Dme) dme14940 CG1420-PA
(FBgn0039626)
Danio rerio (Dre) dre28879 ENSDARP00000007467
(zgc:103640)		 Q5U3F2
Danio rerio (Dre) dre28881 ENSDARP00000008572
Danio rerio (Dre) dre28880 ENSDARP00000041283
Takifugu rubripes (Fru) fru25511 SINFRUP00000152455
Takifugu rubripes (Fru) fru25512 SINFRUP00000172842
Gallus gallus (Gga) gga5646 ENSGALP00000002276
(SFRS12IP1)
Gallus gallus (Gga) gga5645 ENSGALP00000002277
(SLU7)
Homo sapiens (Hsa) hsa26094 ENSP00000297151
(SLU7)		 O95391
Kluyveromyces lactis (Kla) kla4733 KLLA0F14531g
Mus musculus (Mmu) mmu3468 ENSMUSP00000020681
(MGI:2385598)		 Q8BHJ9
Neurospora crassa (Ncr) ncr1897 NCU01950.2
Oryza sativa (Osa) osa15754 3048.m00159
Plasmodium falciparum (Pfa) pfa3065 PFF0500c
Rattus norvegicus (Rno) rno4817 ENSRNOP00000005132
(RGD:631432)		 Q80ZG5
Saccharomyces cerevisiae (Sce) sce1123 YDR088C
(S000002495)
Schizosaccharomyces pombe (Spo) spo2267 SPBC365.05c Q9Y7Y2
Yarrowia lipolytica (Yli) yli3066 YALI0D08624g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g45950
At4g37120
At1g65660
MmuMGI:2385598
GO:0005634 nucleus C
IDA
SpoSPBC365.05c
GO:0005681 spliceosomal complex C
IDA
SceS000002495
ISS
DmeFBgn0039626
PfaPFF0500c
SpoSPBC365.05c
GO:0000386 second spliceosomal transesterification
activity		 F
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0003674 molecular_function F
ND
MmuMGI:2385598
GO:0003676 nucleic acid binding F
ISS
AthAt1g65660
GO:0003727 single-stranded RNA binding F
TAS
AthAt4g37120
At1g65660
GO:0000003 reproduction P
IMP
CelWBGene00010629
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0000398 nuclear mRNA splicing, via spliceosome P
ISS
DmeFBgn0039626
GO:0002119 nematode larval development P
IMP
CelWBGene00010629
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0039626
GO:0008150 biological_process P
ND
AthAt3g45950
MmuMGI:2385598
GO:0008284 positive regulation of cell proliferation P
IGI
AthAt4g37120
IMP
AthAt1g65660
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00010629
GO:0008380 RNA splicing P
ISS
PfaPFF0500c
TAS
AthAt4g37120
At1g65660
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010629
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00010629
GO:0040007 growth P
IMP
CelWBGene00010629
GO:0040011 locomotion P
IMP
CelWBGene00010629

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC365.05c
(Q9Y7Y2)		 YDR088C
(S000002495)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC365.05c
GO:0005681 spliceosomal complex C
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0000386 second spliceosomal transesterification
activity		 F
IDA
SceS000002495
ISS
SpoSPBC365.05c
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IDA
SceS000002495
ISS
SpoSPBC365.05c

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Query species:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk