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Search term: YDR139C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RUB1
SGD link S000002546
Alternative ID YDR139C
Description Ubiquitin-like protein with similarity to mammalian NEDD8; conjugation (neddylation) substrates include the cullins Cdc53p, Rtt101p, and Cul3p; activated by Ula1p and Uba3p (E1 enzyme pair); conjugation mediated by Ubc12p (E2 enzyme)
Synonyms YDR139C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0001 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALINGPOORLY CHARACTERIZED Ubiquitin and ubiquitin-like proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g31340 GI:15221683
Arabidopsis thaliana (Ath) At1g53930 GI:15220991
Arabidopsis thaliana (Ath) At1g53950 GI:15220997
Arabidopsis thaliana (Ath) At1g53980 GI:15221001
Arabidopsis thaliana (Ath) At1g64470 GI:15217656
Arabidopsis thaliana (Ath) At1g65350 GI:15218646
Arabidopsis thaliana (Ath) At2g32350 GI:15225231
Arabidopsis thaliana (Ath) At2g46500_1 GI:18407090
Arabidopsis thaliana (Ath) At3g09790 GI:18398638
Arabidopsis thaliana (Ath) At4g01000_1 GI:15234038
Arabidopsis thaliana (Ath) At4g02890 GI:18412077
Arabidopsis thaliana (Ath) At4g02950 GI:15236225
Arabidopsis thaliana (Ath) At4g02970 GI:15236228
Arabidopsis thaliana (Ath) At4g03350 GI:15236289
Arabidopsis thaliana (Ath) At4g03360 GI:15236291
Arabidopsis thaliana (Ath) At4g03370 GI:15236292
Arabidopsis thaliana (Ath) At4g05050 GI:18412785
Arabidopsis thaliana (Ath) At4g05230 GI:15234664
Arabidopsis thaliana (Ath) At4g05240 GI:15234665
Arabidopsis thaliana (Ath) At4g05250 GI:15234692
Arabidopsis thaliana (Ath) At4g05260 GI:15234695
Arabidopsis thaliana (Ath) At4g05270 GI:15234698
Arabidopsis thaliana (Ath) At4g05310 GI:15234730
Arabidopsis thaliana (Ath) At4g05320 GI:7267292
Arabidopsis thaliana (Ath) At5g03240 GI:11275233
Arabidopsis thaliana (Ath) At5g09340 GI:15242392
Arabidopsis thaliana (Ath) At5g20620 GI:18420267
Arabidopsis thaliana (Ath) At5g24240_1 GI:15237921
Arabidopsis thaliana (Ath) At5g37640 GI:18421671
Caenorhabditis elegans (Cel) CE01921
(WBGene00006727)
GI:17554760
Caenorhabditis elegans (Cel) CE06878_1 GI:17563246 Q18231
Caenorhabditis elegans (Cel) CE08215_2 GI:17531835 P91057
Caenorhabditis elegans (Cel) CE08216_2 GI:17531837 P91056
Caenorhabditis elegans (Cel) CE08222_2 GI:17531849 P91050
Caenorhabditis elegans (Cel) CE08223_2 GI:17531851
Caenorhabditis elegans (Cel) CE08224_2 GI:17531853 P91052
Caenorhabditis elegans (Cel) CE08225_2 GI:17531855 P91053
Caenorhabditis elegans (Cel) CE10806 GI:17534229
Caenorhabditis elegans (Cel) CE10808 GI:17534231
Caenorhabditis elegans (Cel) CE16986
(WBGene00017459)
GI:17533203
Caenorhabditis elegans (Cel) CE17096
(WBGene00018661)
GI:17534233 O44819
Drosophila melanogaster (Dme) 7290696 GI:7290696
Drosophila melanogaster (Dme) 7292401 GI:7292401
Drosophila melanogaster (Dme) 7300339 GI:7300339 Q9VEC8
Homo sapiens (Hsa) Hs11024714
(UBB)
GI:11024714 P62988
Homo sapiens (Hsa) Hs11321577_2
(OASL)
GI:11321577 Q15646
Homo sapiens (Hsa) Hs14741660_1 GI:14741660
Homo sapiens (Hsa) Hs16163829 GI:16163829
Homo sapiens (Hsa) Hs18549673 GI:18549673
Homo sapiens (Hsa) Hs18553707_1 GI:18553707
Homo sapiens (Hsa) Hs20473312 GI:17487291
Homo sapiens (Hsa) Hs20482695 GI:20482695
Homo sapiens (Hsa) Hs20532982 GI:20532982
Homo sapiens (Hsa) Hs20535238 GI:20535238
Homo sapiens (Hsa) Hs20539785 GI:20539785
Homo sapiens (Hsa) Hs20558634 GI:20558634
Homo sapiens (Hsa) Hs22064818 GI:17481486
Homo sapiens (Hsa) Hs4503659_1
(FAU)
GI:4503659 P35544
Homo sapiens (Hsa) Hs4826774
(ISG15)
GI:4826774 P05161
Homo sapiens (Hsa) Hs5454144 GI:5454144
Homo sapiens (Hsa) Hs7657667
(UBL4A)
GI:7657667 P11441
Saccharomyces cerevisiae (Sce) YDR139c
(S000002546)
GI:9755329 Q03919
Saccharomyces cerevisiae (Sce) YLL039c
(S000003962)
GI:6322989 P61864
Schizosaccharomyces pombe (Spo) SPBC337.08c GI:19112201 P0C014
Encephalitozoon cuniculi (Ecu) ECU02g0740i GI:19073994 Q8SWD4
Arabidopsis thaliana (Ath) At1g31340 GI:15221683
Arabidopsis thaliana (Ath) At1g53930 GI:15220991
Arabidopsis thaliana (Ath) At1g53950 GI:15220997
Arabidopsis thaliana (Ath) At1g53980 GI:15221001
Arabidopsis thaliana (Ath) At1g64470 GI:15217656
Arabidopsis thaliana (Ath) At1g65350 GI:15218646
Arabidopsis thaliana (Ath) At2g32350 GI:15225231
Arabidopsis thaliana (Ath) At2g46500_1 GI:18407090
Arabidopsis thaliana (Ath) At3g09790 GI:18398638
Arabidopsis thaliana (Ath) At4g01000_1 GI:15234038
Arabidopsis thaliana (Ath) At4g02890 GI:18412077
Arabidopsis thaliana (Ath) At4g02950 GI:15236225
Arabidopsis thaliana (Ath) At4g02970 GI:15236228
Arabidopsis thaliana (Ath) At4g03350 GI:15236289
Arabidopsis thaliana (Ath) At4g03360 GI:15236291
Arabidopsis thaliana (Ath) At4g03370 GI:15236292
Arabidopsis thaliana (Ath) At4g05050 GI:18412785
Arabidopsis thaliana (Ath) At4g05230 GI:15234664
Arabidopsis thaliana (Ath) At4g05240 GI:15234665
Arabidopsis thaliana (Ath) At4g05250 GI:15234692
Arabidopsis thaliana (Ath) At4g05260 GI:15234695
Arabidopsis thaliana (Ath) At4g05270 GI:15234698
Arabidopsis thaliana (Ath) At4g05310 GI:15234730
Arabidopsis thaliana (Ath) At4g05320 GI:7267292
Arabidopsis thaliana (Ath) At5g03240 GI:11275233
Arabidopsis thaliana (Ath) At5g09340 GI:15242392
Arabidopsis thaliana (Ath) At5g20620 GI:18420267
Arabidopsis thaliana (Ath) At5g24240_1 GI:15237921
Arabidopsis thaliana (Ath) At5g37640 GI:18421671
Caenorhabditis elegans (Cel) CE01921
(WBGene00006727)
GI:17554760
Caenorhabditis elegans (Cel) CE06878_1 GI:17563246 Q18231
Caenorhabditis elegans (Cel) CE08215_2 GI:17531835 P91057
Caenorhabditis elegans (Cel) CE08216_2 GI:17531837 P91056
Caenorhabditis elegans (Cel) CE08222_2 GI:17531849 P91050
Caenorhabditis elegans (Cel) CE08223_2 GI:17531851
Caenorhabditis elegans (Cel) CE08224_2 GI:17531853 P91052
Caenorhabditis elegans (Cel) CE08225_2 GI:17531855 P91053
Caenorhabditis elegans (Cel) CE10806 GI:17534229
Caenorhabditis elegans (Cel) CE10808 GI:17534231
Caenorhabditis elegans (Cel) CE16986
(WBGene00017459)
GI:17533203
Caenorhabditis elegans (Cel) CE17096
(WBGene00018661)
GI:17534233 O44819
Drosophila melanogaster (Dme) 7290696 GI:7290696
Drosophila melanogaster (Dme) 7292401 GI:7292401
Drosophila melanogaster (Dme) 7300339 GI:7300339 Q9VEC8
Homo sapiens (Hsa) Hs11024714
(UBB)
GI:11024714 P62988
Homo sapiens (Hsa) Hs11321577_2
(OASL)
GI:11321577 Q15646
Homo sapiens (Hsa) Hs14741660_1 GI:14741660
Homo sapiens (Hsa) Hs16163829 GI:16163829
Homo sapiens (Hsa) Hs18549673 GI:18549673
Homo sapiens (Hsa) Hs18553707_1 GI:18553707
Homo sapiens (Hsa) Hs20473312 GI:17487291
Homo sapiens (Hsa) Hs20482695 GI:20482695
Homo sapiens (Hsa) Hs20532982 GI:20532982
Homo sapiens (Hsa) Hs20535238 GI:20535238
Homo sapiens (Hsa) Hs20539785 GI:20539785
Homo sapiens (Hsa) Hs20558634 GI:20558634
Homo sapiens (Hsa) Hs22064818 GI:17481486
Homo sapiens (Hsa) Hs4503659_1
(FAU)
GI:4503659 P35544
Homo sapiens (Hsa) Hs4826774
(ISG15)
GI:4826774 P05161
Homo sapiens (Hsa) Hs5454144 GI:5454144
Homo sapiens (Hsa) Hs7657667
(UBL4A)
GI:7657667 P11441
Saccharomyces cerevisiae (Sce) YDR139c
(S000002546)
GI:9755329 Q03919
Saccharomyces cerevisiae (Sce) YLL039c
(S000003962)
GI:6322989 P61864
Schizosaccharomyces pombe (Spo) SPBC337.08c GI:19112201 P0C014
Encephalitozoon cuniculi (Ecu) ECU02g0740i GI:19073994 Q8SWD4
Arabidopsis thaliana (Ath) At1g31340 GI:15221683
Arabidopsis thaliana (Ath) At1g53930 GI:15220991
Arabidopsis thaliana (Ath) At1g53950 GI:15220997
Arabidopsis thaliana (Ath) At1g53980 GI:15221001
Arabidopsis thaliana (Ath) At1g64470 GI:15217656
Arabidopsis thaliana (Ath) At1g65350 GI:15218646
Arabidopsis thaliana (Ath) At2g32350 GI:15225231
Arabidopsis thaliana (Ath) At2g46500_1 GI:18407090
Arabidopsis thaliana (Ath) At3g09790 GI:18398638
Arabidopsis thaliana (Ath) At4g01000_1 GI:15234038
Arabidopsis thaliana (Ath) At4g02890 GI:18412077
Arabidopsis thaliana (Ath) At4g02950 GI:15236225
Arabidopsis thaliana (Ath) At4g02970 GI:15236228
Arabidopsis thaliana (Ath) At4g03350 GI:15236289
Arabidopsis thaliana (Ath) At4g03360 GI:15236291
Arabidopsis thaliana (Ath) At4g03370 GI:15236292
Arabidopsis thaliana (Ath) At4g05050 GI:18412785
Arabidopsis thaliana (Ath) At4g05230 GI:15234664
Arabidopsis thaliana (Ath) At4g05240 GI:15234665
Arabidopsis thaliana (Ath) At4g05250 GI:15234692
Arabidopsis thaliana (Ath) At4g05260 GI:15234695
Arabidopsis thaliana (Ath) At4g05270 GI:15234698
Arabidopsis thaliana (Ath) At4g05310 GI:15234730
Arabidopsis thaliana (Ath) At4g05320 GI:7267292
Arabidopsis thaliana (Ath) At5g03240 GI:11275233
Arabidopsis thaliana (Ath) At5g09340 GI:15242392
Arabidopsis thaliana (Ath) At5g20620 GI:18420267
Arabidopsis thaliana (Ath) At5g24240_1 GI:15237921
Arabidopsis thaliana (Ath) At5g37640 GI:18421671
Caenorhabditis elegans (Cel) CE01921
(WBGene00006727)
GI:17554760
Caenorhabditis elegans (Cel) CE06878_1 GI:17563246 Q18231
Caenorhabditis elegans (Cel) CE08215_2 GI:17531835 P91057
Caenorhabditis elegans (Cel) CE08216_2 GI:17531837 P91056
Caenorhabditis elegans (Cel) CE08222_2 GI:17531849 P91050
Caenorhabditis elegans (Cel) CE08223_2 GI:17531851
Caenorhabditis elegans (Cel) CE08224_2 GI:17531853 P91052
Caenorhabditis elegans (Cel) CE08225_2 GI:17531855 P91053
Caenorhabditis elegans (Cel) CE10806 GI:17534229
Caenorhabditis elegans (Cel) CE10808 GI:17534231
Caenorhabditis elegans (Cel) CE16986
(WBGene00017459)
GI:17533203
Caenorhabditis elegans (Cel) CE17096
(WBGene00018661)
GI:17534233 O44819
Drosophila melanogaster (Dme) 7290696 GI:7290696
Drosophila melanogaster (Dme) 7292401 GI:7292401
Drosophila melanogaster (Dme) 7300339 GI:7300339 Q9VEC8
Homo sapiens (Hsa) Hs11024714
(UBB)
GI:11024714 P62988
Homo sapiens (Hsa) Hs11321577_2
(OASL)
GI:11321577 Q15646
Homo sapiens (Hsa) Hs14741660_1 GI:14741660
Homo sapiens (Hsa) Hs16163829 GI:16163829
Homo sapiens (Hsa) Hs18549673 GI:18549673
Homo sapiens (Hsa) Hs18553707_1 GI:18553707
Homo sapiens (Hsa) Hs20473312 GI:17487291
Homo sapiens (Hsa) Hs20482695 GI:20482695
Homo sapiens (Hsa) Hs20532982 GI:20532982
Homo sapiens (Hsa) Hs20535238 GI:20535238
Homo sapiens (Hsa) Hs20539785 GI:20539785
Homo sapiens (Hsa) Hs20558634 GI:20558634
Homo sapiens (Hsa) Hs22064818 GI:17481486
Homo sapiens (Hsa) Hs4503659_1
(FAU)
GI:4503659 P35544
Homo sapiens (Hsa) Hs4826774
(ISG15)
GI:4826774 P05161
Homo sapiens (Hsa) Hs5454144 GI:5454144
Homo sapiens (Hsa) Hs7657667
(UBL4A)
GI:7657667 P11441
Saccharomyces cerevisiae (Sce) YDR139c
(S000002546)
GI:9755329 Q03919
Saccharomyces cerevisiae (Sce) YLL039c
(S000003962)
GI:6322989 P61864
Schizosaccharomyces pombe (Spo) SPBC337.08c GI:19112201 P0C014
Encephalitozoon cuniculi (Ecu) ECU02g0740i GI:19073994 Q8SWD4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g03360
At1g53930
At1g53950
At4g02950
At4g01000
At2g46500
At1g64470
At4g05240
At1g53980
At2g32350
At4g05230
At4g05250
At4g05260
At4g05270
At4g05310
At5g09340
HsaFAU
SpoSPBC337.08c
GO:0005615 extracellular space C
NAS
HsaISG15
GO:0005618 cell wall C
IDA
AthAt3g09790
At5g37640
GO:0005622 intracellular C
TAS
AthAt3g09790
At1g65350
At4g05050
At5g03240
At5g37640
GO:0005730 nucleolus C
IDA
AthAt5g37640
TAS
HsaOASL
GO:0005737 cytoplasm C
IC
SceS000003962
IDA
SceS000002546
NAS
HsaISG15
TAS
HsaOASL
GO:0005773 vacuole C
IDA
AthAt3g09790
At4g02890
At5g03240
GO:0005777 peroxisome C
IDA
AthAt5g24240
GO:0005786 signal recognition particle, endoplasmic reticulum
targeting
C
ISS
AthAt4g02970
GO:0005829 cytosol C
EXP
HsaFAU
GO:0005886 plasma membrane C
IDA
AthAt1g31340
At5g37640
GO:0015935 small ribosomal subunit C
IDA
HsaFAU
GO:0022627 cytosolic small ribosomal subunit C
IDA
HsaFAU
GO:0003674 molecular_function F
ND
AthAt1g53950
At4g03350
At4g05270
At4g01000
At4g02950
At4g03370
At4g05260
At4g05240
At1g64470
At1g53980
At1g53930
At4g05310
At2g32350
At4g02970
At4g03360
At4g05230
At4g05250
At5g09340
HsaFAU
GO:0003677 DNA binding F
TAS
HsaOASL
GO:0003723 RNA binding F
TAS
HsaFAU
GO:0003725 double-stranded RNA binding F
TAS
HsaOASL
GO:0003735 structural constituent of ribosome F
IDA
HsaFAU
RCA
SceS000003962
GO:0004428 inositol or phosphatidylinositol kinase
activity
F
IDA
AthAt2g46500
ISS
AthAt2g46500
At5g24240
GO:0005515 protein binding F
IPI
HsaISG15
ISS
AthAt4g02890
At4g05050
At4g05320
At5g20620
GO:0019787 small conjugating protein ligase
activity
F
TAS
HsaUBL4A
GO:0031386 protein tag F
IDA
SceS000002546
ISS
SceS000002546
S000003962
NAS
SpoSPBC337.08c
GO:0043008 ATP-dependent protein binding F
TAS
SceS000003962
GO:0046966 thyroid hormone receptor binding F
TAS
HsaOASL
GO:0000003 reproduction P
IMP
CelWBGene00006727
WBGene00004499
WBGene00015842
GO:0000209 protein polyubiquitination P
TAS
SceS000003962
GO:0002119 nematode larval development P
IMP
CelWBGene00006727
WBGene00004499
GO:0006412 translation P
IC
HsaFAU
GO:0006414 translational elongation P
EXP
HsaFAU
GO:0006464 protein modification process P
ISS
AthAt1g53950
At4g02890
At3g09790
At4g05050
At1g53930
At1g31340
At1g65350
At4g05320
At5g03240
At5g20620
At5g37640
TAS
AthAt4g05320
HsaUBL4A
GO:0006508 proteolysis P