YOGY Home YOGY Help

Search term: YDR190C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RVB1
SGD link S000002598
Alternative ID YDR190C
Description Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; also referred to as pontin; member of the RUVB-like protein family
Synonyms YDR190C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1942 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA helicase, TBP-interacting protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g22330 GI:15242217
Caenorhabditis elegans (Cel) CE08426
(WBGene00007784)		 GI:17558290
Drosophila melanogaster (Dme) 7299320 GI:7299320
Homo sapiens (Hsa) Hs4506753
(RUVBL1)		 GI:4506753 Q9Y265
Saccharomyces cerevisiae (Sce) YDR190c
(S000002598)		 GI:6320396 Q03940
Schizosaccharomyces pombe (Spo) SPAPB8E5.09 GI:19115695 Q9C0X6
Encephalitozoon cuniculi (Ecu) ECU09g1390 GI:19173260


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000812 Swr1 complex C
IDA
SceS000002598
SpoSPAPB8E5.09
GO:0005634 nucleus C
IDA
AthAt5g22330
HsaRUVBL1
SceS000002598
SpoSPAPB8E5.09
GO:0005730 nucleolus C
IDA
AthAt5g22330
GO:0005829 cytosol C
IDA
SpoSPAPB8E5.09
GO:0009507 chloroplast C
IDA
AthAt5g22330
GO:0016585 chromatin remodeling complex C
IDA
SceS000002598
GO:0031011 Ino80 complex C
IDA
SpoSPAPB8E5.09
IPI
SceS000002598
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
HsaRUVBL1
GO:0070209 ASTRA complex C
IDA
SceS000002598
SpoSPAPB8E5.09
GO:0071339 MLL1 complex C
IDA
HsaRUVBL1
GO:0003678 DNA helicase activity F
IDA
HsaRUVBL1
GO:0005515 protein binding F
IPI
AthAt5g22330
HsaRUVBL1
GO:0016887 ATPase activity F
IMP
SceS000002598
NAS
SpoSPAPB8E5.09
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000002598
GO:0000003 reproduction P
IMP
CelWBGene00007784
GO:0000492 box C/D snoRNP assembly P
IMP
CelWBGene00007784
GO:0002119 nematode larval development P
IMP
CelWBGene00007784
GO:0006200 ATP catabolic process P
NAS
SpoSPAPB8E5.09
GO:0006338 chromatin remodeling P
IDA
SceS000002598
IPI
SceS000002598
SpoSPAPB8E5.09
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IMP
SceS000002598
TAS
HsaRUVBL1
GO:0007283 spermatogenesis P
TAS
HsaRUVBL1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007784
GO:0010171 body morphogenesis P
IMP
CelWBGene00007784
GO:0016246 RNA interference P
IMP
CelWBGene00007784
GO:0031929 TOR signaling cascade P
IMP
CelWBGene00007784
GO:0040007 growth P
IMP
CelWBGene00007784
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007784
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00007784
GO:0040039 inductive cell migration P
IMP
CelWBGene00007784
GO:0043486 histone exchange P
IPI
SpoSPAPB8E5.09
GO:0043967 histone H4 acetylation P
IDA
HsaRUVBL1
GO:0043968 histone H2A acetylation P
IDA
HsaRUVBL1
GO:0045727 positive regulation of translation P
IMP
CelWBGene00007784
GO:0048507 meristem development P
IMP
AthAt5g22330

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
37839

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RUVBL1 GI:4506753 Q9Y265
Canis familiaris (Cfa) RUVBL1 GI:73984478
Mus musculus (Mmu) Ruvbl1
(MGI:1928760)		 GI:9790083 P60122
Rattus norvegicus (Rno) Ruvbl1
(RGD:68373)		 GI:22208848
Gallus gallus (Gga) RUVBL1 GI:57524964
Drosophila melanogaster (Dme) pont
(FBgn0040078)		 GI:21358125
Caenorhabditis elegans (Cel) ruvb-1
(CE08426;
WBGene00007784)		 GI:17558290
Schizosaccharomyces pombe (Spo) SPAPB8E5.09 GI:19115695 Q9C0X6
Saccharomyces cerevisiae (Sce) RVB1
(S000002598)		 GI:6320396 Q03940
Kluyveromyces lactis (Kla) KLLA0D18502g GI:50307773
Eremothecium gossypii (Ego) AGOS_AGL119C GI:45200978
Magnaporthe grisea (Mgr) MGG_03958 GI:145607071
Neurospora crassa (Ncr) NCU03482.1 GI:32404254
Arabidopsis thaliana (Ath) RIN1 GI:15242217
Oryza sativa (Osa) Os01g0837500 GI:115440917
Plasmodium falciparum (Pfa) PF11_0071 GI:124803531


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000812 Swr1 complex C
IDA
SceS000002598
SpoSPAPB8E5.09
GO:0005575 cellular_component C
ND
AthRIN1
PfaPF11_0071
GO:0005634 nucleus C
IDA
AthRIN1
HsaRUVBL1
SceS000002598
SpoSPAPB8E5.09
ISO
MmuMGI:1928760
GO:0005730 nucleolus C
IDA
AthRIN1
GO:0005829 cytosol C
IDA
SpoSPAPB8E5.09
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0040078
GO:0009507 chloroplast C
IDA
AthRIN1
GO:0016585 chromatin remodeling complex C
IDA
SceS000002598
GO:0030529 ribonucleoprotein complex C
IDA
MmuMGI:1928760
GO:0031011 Ino80 complex C
IDA
DmeFBgn0040078
SpoSPAPB8E5.09
IPI
SceS000002598
GO:0035060 brahma complex C
IDA
DmeFBgn0040078
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
HsaRUVBL1
GO:0043234 protein complex C
ISO
MmuMGI:1928760
GO:0070209 ASTRA complex C
IDA
SceS000002598
SpoSPAPB8E5.09
GO:0071339 MLL1 complex C
IDA
HsaRUVBL1
GO:0003674 molecular_function F
ND
AthRIN1
GO:0003678 DNA helicase activity F
IDA
HsaRUVBL1
ISS
DmeFBgn0040078
GO:0005515 protein binding F
IPI
AthRIN1
HsaRUVBL1
GO:0008013 beta-catenin binding F
ISS
DmeFBgn0040078
GO:0016887 ATPase activity F
IMP
SceS000002598
ISS
PfaPF11_0071
NAS
SpoSPAPB8E5.09
GO:0017025 TATA-binding protein binding F
ISS
DmeFBgn0040078
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000002598
GO:0000003 reproduction P
IMP
CelWBGene00007784
GO:0000492 box C/D snoRNP assembly P
IMP
CelWBGene00007784
GO:0002119 nematode larval development P
IMP
CelWBGene00007784
GO:0006200 ATP catabolic process P
NAS
SpoSPAPB8E5.09
GO:0006281 DNA repair P
ISS
PfaPF11_0071
GO:0006310 DNA recombination P
ISS
PfaPF11_0071
GO:0006338 chromatin remodeling P
IDA
SceS000002598
IPI
SceS000002598
SpoSPAPB8E5.09
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IMP
SceS000002598
TAS
HsaRUVBL1
GO:0007283 spermatogenesis P
TAS
HsaRUVBL1
GO:0009626 plant-type hypersensitive response P
IMP
AthRIN1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007784
GO:0010171 body morphogenesis P
IMP
CelWBGene00007784
GO:0010628 positive regulation of gene expression P
IMP
DmeFBgn0040078
GO:0016246 RNA interference P
IMP
CelWBGene00007784
GO:0031929 TOR signaling cascade P
IMP
CelWBGene00007784
GO:0040007 growth P
IMP
CelWBGene00007784
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007784
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00007784
GO:0040039 inductive cell migration P
IMP
CelWBGene00007784
GO:0042742 defense response to bacterium P
IMP
AthRIN1
GO:0043486 histone exchange P
IPI
SpoSPAPB8E5.09
GO:0043967 histone H4 acetylation P
IDA
HsaRUVBL1
GO:0043968 histone H2A acetylation P
IDA
HsaRUVBL1
GO:0045727 positive regulation of translation P
IMP
CelWBGene00007784
GO:0048507 meristem development P
IMP
AthRIN1

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1918

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5695 ENSANGP00000028927
Ashbya gossypii (Ago) ago4193 AGL119C
Arabidopsis thaliana (Ath) ath24463 At5g22330.1
Caenorhabditis elegans (Cel) cel2890 C27H6.2
(CE08426;
WBGene00007784)
Candida glabrata (Cgl) cgl1474 CAGL0F05643g
Cryptococcus neoformans (Cne) cne1909 181.m07878
Dictyostelium discoideum (Ddi) ddi10024 DDB0191832
Debaryomyces hansenii (Dha) dha6326 DEHA0G14069g
Drosophila melanogaster (Dme) dme11874 CG4003-PA
(FBgn0040078)
Danio rerio (Dre) dre20644 ENSDARP00000012488
(ruvbl1)		 Q6IQT8
Encephalitozoon cuniculi (Ecu) ecu1411 19173260
Takifugu rubripes (Fru) fru28859 SINFRUP00000127945
Gallus gallus (Gga) gga5246 ENSGALP00000009528
(RUVBL1)		 Q5ZIC4
Homo sapiens (Hsa) hsa23091 ENSP00000318297
(RUVBL1)		 Q9Y265-1
Kluyveromyces lactis (Kla) kla2879 KLLA0D18502g
Mus musculus (Mmu) mmu22303 ENSMUSP00000032165
(MGI:1928760)		 P60122
Neurospora crassa (Ncr) ncr3374 NCU03482.2
Oryza sativa (Osa) osa32231 4448.m00165
Plasmodium falciparum (Pfa) pfa2194 PF08_0100
Plasmodium falciparum (Pfa) pfa1021 PF11_0071
Rattus norvegicus (Rno) rno21815 ENSRNOP00000018339
(RGD:68373)		 P60123
Saccharomyces cerevisiae (Sce) sce1233 YDR190C
(S000002598)
Schizosaccharomyces pombe (Spo) spo3738 SPAPB8E5.09 Q9C0X6
Yarrowia lipolytica (Yli) yli2590 YALI0C21868g