Bahler Lab

Search term: YDR192C

Gene summary:

Species Saccharomyces cerevisiae (Sce)

Primary name NUP42

SGD link S000002600

Alternative ID YDR192C

Description Subunit of the nuclear pore complex (NPC) that localizes exclusively to the cytoplasmic side; involved in RNA export, most likely at a terminal step; interacts with Gle1p

Synonyms YDR192C

Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards: Yes No

Search for GO info: Yes No

GO info in one table: Yes No

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)

KOG0845 ACDHYPE

KOGs classification KOGs description

CELLULAR PROCESSES AND SIGNALINGCELLULAR PROCESSES AND SIGNALING Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)

GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations

GO:0000776 kinetochore C
IDA
Hsa NUP98

GO:0005575 cellular_component C
ND
Ath At3g10650

GO:0005634 nucleus C
IDA
Ath At1g80680
Spo SPAC22G7.09c

GO:0005635 nuclear envelope C
EXP
Hsa NUP98
IDA
Cel WBGene00003797
Hsa NUP98
Sce S000003140

GO:0005643 nuclear pore C
IDA
Hsa NUP98
Sce S000002600
S000003060
S000003140
S000001551
S000004650
NAS
Hsa NUP98
TAS
Spo SPAC1486.05
SPAC22G7.09c

GO:0005654 nucleoplasm C
TAS
Hsa NUP98

GO:0005737 cytoplasm C
IDA
Spo SPAC22G7.09c

GO:0031080 Nup107-160 complex C
IDA
Hsa NUP98
Sce S000003060
Spo SPAC1486.05
NAS
Hsa NUP98

GO:0031965 nuclear membrane C
IDA
Ath At1g80680
Spo SPAC1486.05
SPAC22G7.09c

GO:0055125 Nic96 complex C
IDA
Sce S000003140

GO:0055126 Nup82 complex C
IDA
Sce S000004650

GO:0003674 molecular_function F
ND
Ath At3g10650
Spo SPAC22G7.09c

GO:0003723 RNA binding F
IDA
Sce S000003060

GO:0005198 structural molecule activity F
TAS
Sce S000002600
S000003060
S000003140
S000001551
S000004650

GO:0005215 transporter activity F
ISS
Ath At1g10390
At1g59660
TAS
Hsa NUP98

GO:0005515 protein binding F
IPI
Cel WBGene00003790
WBGene00003797
Hsa NUP98
Spo SPAC1486.05

GO:0008233 peptidase activity F
ISS
Spo SPAC1486.05

GO:0015288 porin activity F
ISS
Ath At1g80680

GO:0017056 structural constituent of nuclear
pore F
NAS
Hsa NUP98

GO:0000003 reproduction P
IMP
Cel WBGene00003790
WBGene00003797

GO:0000054 ribosomal subunit export from nucleus P
RCA
Sce S000003060

GO:0000055 ribosomal large subunit export from
nucleus P
IMP
Sce S000003140

GO:0000059 protein import into nucleus, docking P
NAS
Hsa NUP98

GO:0000132 establishment of mitotic spindle
orientation P
IMP
Cel WBGene00003790
WBGene00003797

GO:0002119 nematode larval development P
IMP
Cel WBGene00003797
WBGene00003793

GO:0006260 DNA replication P
IMP
Hsa NUP98

GO:0006388 tRNA splicing, via endonucleolytic cleavage and
ligation P
IMP
Sce S000004650
S000003060
S000003140

GO:0006406 mRNA export from nucleus P
IGI
Ath At1g80680
IMP
Sce S000003060
S000003140
S000004650
TAS
Sce S000001551
S000002600

GO:0006407 rRNA export from nucleus P
ISS
Spo SPAC1486.05
TAS
Sce S000002600
S000003060
S000003140
S000001551
S000004650

GO:0006408 snRNA export from nucleus P
TAS
Sce S000003060
S000002600
S000003140
S000001551
S000004650

GO:0006409 tRNA export from nucleus P
IMP
Sce S000004650
TAS
Sce S000002600
S000003060
S000003140
S000001551

GO:0006414 translational elongation P
RCA
Sce S000002600

GO:0006606 protein import into nucleus P
IMP
Sce S000003060
S000003140
S000004650

GO:0006607 NLS-bearing substrate import into
nucleus P
TAS
Sce S000002600
S000003060
S000004650
S000003140
S000001551

GO:0006608 snRNP protein import into nucleus P
TAS
Sce S000002600
S000003060
S000003140
S000001551
S000004650

GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus P
TAS
Sce S000002600
S000003060
S000003140
S000001551
S000004650

GO:0006610 ribosomal protein import into nucleus P
TAS
Sce S000002600
S000003060
S000003140
S000001551
S000004650

GO:0006611 protein export from nucleus P
TAS
Sce S000003140
S000002600
S000003060
S000004650
S000001551

GO:0006898 receptor-mediated endocytosis P
IMP
Cel WBGene00003790
WBGene00003797

GO:0006913 nucleocytoplasmic transport P
TAS
Hsa NUP98
Spo SPAC22G7.09c
SPAC1486.05

GO:0006997 nucleus organization P
IMP
Cel WBGene00003797
WBGene00003790
WBGene00003793
Spo SPAC1486.05

GO:0006999 nuclear pore organization P
IMP
Sce S000003060
NAS
Hsa NUP98
TAS
Sce S000002600
S000004650
S000003140
S000001551

GO:0008150 biological_process P
ND
Ath At3g10650

GO:0009733 response to auxin stimulus P
IGI
Ath At1g80680

GO:0009792 embryo development ending in birth or egg
hatching P
IMP
Cel WBGene00003797
WBGene00003793
WBGene00003790

GO:0009870 defense response signaling pathway, resistance
gene-dependent P
IMP
Ath At1g80680

GO:0009910 negative regulation of flower development P
NAS
Ath At1g80680

GO:0040007 growth P
IMP
Cel WBGene00003797
WBGene00003793

GO:0040010 positive regulation of growth rate P
IMP
Cel WBGene00003790
WBGene00003797

GO:0040035 hermaphrodite genitalia development P
IMP
Cel WBGene00003790
WBGene00003797

GO:0045184 establishment of protein localization P
RCA
Sce S000003060
S000003140
S000004650

GO:0050000 chromosome localization P
IMP
Sce S000003060

GO:0051301 cell division P
IMP
Spo SPAC1486.05
SPAC22G7.09c

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern

OG1_9424

Species OrthoMCL
sequence Model organism
protein page UniProt link

Anopheles gambiae (Aga) aga6490 ENSANGP00000025590

Ashbya gossypii (Ago) ago4196 AGL116C

Candida glabrata (Cgl) cgl1472 CAGL0F05599g

Cryptococcus neoformans (Cne) cne520 163.m06522

Debaryomyces hansenii (Dha) dha6335 DEHA0G14256g

Kluyveromyces lactis (Kla) kla2883 KLLA0D18579g

Neurospora crassa (Ncr) ncr6707 NCU06894.2

Saccharomyces cerevisiae (Sce) sce1235 YDR192C
(S000002600)

GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations

GO:0005643 nuclear pore C
IDA
Sce S000002600

GO:0005198 structural molecule activity F
TAS
Sce S000002600

GO:0006406 mRNA export from nucleus P
TAS
Sce S000002600

GO:0006407 rRNA export from nucleus P
TAS
Sce S000002600

GO:0006408 snRNA export from nucleus P
TAS
Sce S000002600

GO:0006409 tRNA export from nucleus P
TAS
Sce S000002600

GO:0006414 translational elongation P
RCA
Sce S000002600

GO:0006607 NLS-bearing substrate import into
nucleus P
TAS
Sce S000002600

GO:0006608 snRNP protein import into nucleus P
TAS
Sce S000002600

GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus P
TAS
Sce S000002600

GO:0006610 ribosomal protein import into nucleus P
TAS
Sce S000002600

GO:0006611 protein export from nucleus P
TAS
Sce S000002600

GO:0006999 nuclear pore organization P
TAS
Sce S000002600

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID S. cerevisiae
systematic ID

SPAC23D3.06c
(Q09847) YDR192C
(S000002600)

GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations

GO:0005634 nucleus C
IDA
Spo SPAC23D3.06c

GO:0005635 nuclear envelope C
IDA
Spo SPAC23D3.06c

GO:0005643 nuclear pore C
IDA
Sce S000002600
TAS
Spo SPAC23D3.06c

GO:0005829 cytosol C
IDA
Spo SPAC23D3.06c

GO:0031965 nuclear membrane C
IDA
Spo SPAC23D3.06c

GO:0005198 structural molecule activity F
TAS
Sce S000002600

GO:0005515 protein binding F
IPI
Spo SPAC23D3.06c

GO:0006406 mRNA export from nucleus P
TAS
Sce S000002600

GO:0006407 rRNA export from nucleus P
ISS
Spo SPAC23D3.06c
TAS
Sce S000002600

GO:0006408 snRNA export from nucleus P
TAS
Sce S000002600

GO:0006409 tRNA export from nucleus P
TAS
Sce S000002600

GO:0006414 translational elongation P
RCA
Sce S000002600

GO:0006607 NLS-bearing substrate import into
nucleus P
TAS
Sce S000002600

GO:0006608 snRNP protein import into nucleus P
TAS
Sce S000002600

GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus P
TAS
Sce S000002600

GO:0006610 ribosomal protein import into nucleus P
TAS
Sce S000002600

GO:0006611 protein export from nucleus P
TAS
Sce S000002600

GO:0006913 nucleocytoplasmic transport P
TAS
Spo SPAC23D3.06c

GO:0006999 nuclear pore organization P
TAS
Sce S000002600

GO:0051301 cell division P
IMP
Spo SPAC23D3.06c

Back to the top

YOGY Home

YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards: Yes No

Search for GO info: Yes No

GO info in one table: Yes No

s.khadayate@ucl.ac.uk

KOG name	Phylogenetic pattern (and link to KOGs with this pattern)
KOG0845	ACDHYPE

KOGs classification	KOGs description
CELLULAR PROCESSES AND SIGNALINGCELLULAR PROCESSES AND SIGNALING	Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)

Species	KOG link	NCBI link	UniProt link
Arabidopsis thaliana (Ath)	At1g10390	GI:15218520
Arabidopsis thaliana (Ath)	At1g59660	GI:15218866
Arabidopsis thaliana (Ath)	At1g80680	GI:15220199
Arabidopsis thaliana (Ath)	At3g10650	GI:15228349
Caenorhabditis elegans (Cel)	CE10988_1	GI:17507541	O01576
Caenorhabditis elegans (Cel)	CE13738 (WBGene00003793)	GI:17509085	P91457
Caenorhabditis elegans (Cel)	CE20315 (WBGene00003790)	GI:17510275	Q9XWK3
Caenorhabditis elegans (Cel)	CE28183	GI:17556885
Caenorhabditis elegans (Cel)	CE28184	GI:17556883
Drosophila melanogaster (Dme)	7300534	GI:7300534
Drosophila melanogaster (Dme)	7301053	GI:7301053
Drosophila melanogaster (Dme)	7301054	GI:7301054
Homo sapiens (Hsa)	Hs15147335 (NCOA5)	GI:15147335	Q9HCD5
Homo sapiens (Hsa)	Hs21264365 (NUP98)	GI:21264365	Q9Y6J4
Homo sapiens (Hsa)	Hs21264367	GI:21264367
Homo sapiens (Hsa)	Hs21264369	GI:1709400
Homo sapiens (Hsa)	Hs21264371	GI:21264371
Homo sapiens (Hsa)	HsM11120678	GI:11120678
Saccharomyces cerevisiae (Sce)	YDR192c (S000002600)	GI:6320399	P49686
Saccharomyces cerevisiae (Sce)	YGL092w (S000003060)	GI:6321346	P49687
Saccharomyces cerevisiae (Sce)	YGL172w (S000003140)	GI:6321266	Q02199
Saccharomyces cerevisiae (Sce)	YKL068w (S000001551)	GI:6322782	Q02629
Saccharomyces cerevisiae (Sce)	YMR047c (S000004650)	GI:6323691	Q02630
Schizosaccharomyces pombe (Spo)	SPAC1486.05	GI:19115005	Q9UTK4
Schizosaccharomyces pombe (Spo)	SPAC22G7.09c	GI:19113970	Q09793
Encephalitozoon cuniculi (Ecu)	ECU02g0460	GI:19073967	Q8SWE7
Encephalitozoon cuniculi (Ecu)	ECU11g1820	GI:19074982	Q8SQR9
Arabidopsis thaliana (Ath)	At1g10390	GI:15218520
Arabidopsis thaliana (Ath)	At1g59660	GI:15218866
Arabidopsis thaliana (Ath)	At1g80680	GI:15220199
Arabidopsis thaliana (Ath)	At3g10650	GI:15228349
Caenorhabditis elegans (Cel)	CE10988_1	GI:17507541	O01576
Caenorhabditis elegans (Cel)	CE13738 (WBGene00003793)	GI:17509085	P91457
Caenorhabditis elegans (Cel)	CE20315 (WBGene00003790)	GI:17510275	Q9XWK3
Caenorhabditis elegans (Cel)	CE28183	GI:17556885
Caenorhabditis elegans (Cel)	CE28184	GI:17556883
Drosophila melanogaster (Dme)	7300534	GI:7300534
Drosophila melanogaster (Dme)	7301053	GI:7301053
Drosophila melanogaster (Dme)	7301054	GI:7301054
Homo sapiens (Hsa)	Hs15147335 (NCOA5)	GI:15147335	Q9HCD5
Homo sapiens (Hsa)	Hs21264365 (NUP98)	GI:21264365	Q9Y6J4
Homo sapiens (Hsa)	Hs21264367	GI:21264367
Homo sapiens (Hsa)	Hs21264369	GI:1709400
Homo sapiens (Hsa)	Hs21264371	GI:21264371
Homo sapiens (Hsa)	HsM11120678	GI:11120678
Saccharomyces cerevisiae (Sce)	YDR192c (S000002600)	GI:6320399	P49686
Saccharomyces cerevisiae (Sce)	YGL092w (S000003060)	GI:6321346	P49687
Saccharomyces cerevisiae (Sce)	YGL172w (S000003140)	GI:6321266	Q02199
Saccharomyces cerevisiae (Sce)	YKL068w (S000001551)	GI:6322782	Q02629
Saccharomyces cerevisiae (Sce)	YMR047c (S000004650)	GI:6323691	Q02630
Schizosaccharomyces pombe (Spo)	SPAC1486.05	GI:19115005	Q9UTK4
Schizosaccharomyces pombe (Spo)	SPAC22G7.09c	GI:19113970	Q09793
Encephalitozoon cuniculi (Ecu)	ECU02g0460	GI:19073967	Q8SWE7
Encephalitozoon cuniculi (Ecu)	ECU11g1820	GI:19074982	Q8SQR9

Species	OrthoMCL sequence	Model organism protein page	UniProt link
Anopheles gambiae (Aga)	aga6490	ENSANGP00000025590
Ashbya gossypii (Ago)	ago4196	AGL116C
Candida glabrata (Cgl)	cgl1472	CAGL0F05599g
Cryptococcus neoformans (Cne)	cne520	163.m06522
Debaryomyces hansenii (Dha)	dha6335	DEHA0G14256g
Kluyveromyces lactis (Kla)	kla2883	KLLA0D18579g
Neurospora crassa (Ncr)	ncr6707	NCU06894.2
Saccharomyces cerevisiae (Sce)	sce1235	YDR192C (S000002600)

S. pombe systematic ID	S. cerevisiae systematic ID
SPAC23D3.06c (Q09847)	YDR192C (S000002600)