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Search term: YDR233C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RTN1
SGD link S000002641
Alternative ID YDR233C
Description ER membrane protein that interacts with Sey1p to maintain ER morphology; interacts with exocyst subunit Sec6p, with Yip3p, and with Sbh1p; null mutant has an altered ER morphology; member of the RTNLA (reticulon-like A) subfamily
Synonyms YDR233C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1792 ACDHY--

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Reticulon

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g64090 GI:15222616
Arabidopsis thaliana (Ath) At1g68230 GI:15221333
Arabidopsis thaliana (Ath) At2g01240 GI:15226209
Arabidopsis thaliana (Ath) At2g15280 GI:15226081
Arabidopsis thaliana (Ath) At2g23640 GI:18400337
Arabidopsis thaliana (Ath) At2g46170 GI:18406991
Arabidopsis thaliana (Ath) At3g10260 GI:18398810
Arabidopsis thaliana (Ath) At3g18260 GI:18401821
Arabidopsis thaliana (Ath) At3g19460 GI:18402246
Arabidopsis thaliana (Ath) At3g54120 GI:15232423
Arabidopsis thaliana (Ath) At3g61560 GI:15233147
Arabidopsis thaliana (Ath) At4g01230 GI:15234108
Arabidopsis thaliana (Ath) At4g11220 GI:15237093
Arabidopsis thaliana (Ath) At4g23630 GI:15236556
Arabidopsis thaliana (Ath) At5g41600 GI:15238125
Caenorhabditis elegans (Cel) CE14668 GI:17565082 Q23188
Drosophila melanogaster (Dme) 7296921 GI:19920716
Drosophila melanogaster (Dme) 7296925 GI:7296925
Drosophila melanogaster (Dme) 7298799 GI:7298799 Q9VIB7
Homo sapiens (Hsa) Hs10863935
(RTN1)		 GI:10863935 Q16799
Homo sapiens (Hsa) Hs14729419 GI:14729419
Homo sapiens (Hsa) Hs17444699 GI:17444699
Homo sapiens (Hsa) Hs5032055 GI:5032055 O75298
Homo sapiens (Hsa) Hs5174655 GI:5174655 Q9BVW7
Homo sapiens (Hsa) Hs5902016 GI:5902016 Q9Y293
Saccharomyces cerevisiae (Sce) YDL204w
(S000002363)		 GI:6319997 Q12443
Saccharomyces cerevisiae (Sce) YDR233c
(S000002641)		 GI:6320439 Q04947


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005635 nuclear envelope C
IDA
SceS000002363
GO:0005739 mitochondrion C
IDA
AthAt3g10260
SceS000002641
GO:0005773 vacuole C
IDA
AthAt4g23630
GO:0005783 endoplasmic reticulum C
IDA
AthAt1g64090
At2g46170
SceS000002363
S000002641
ISS
AthAt4g11220
At4g23630
At5g41600
At3g61560
At2g23640
At1g68230
At1g64090
At2g15280
At3g19460
At4g01230
At3g54120
At2g46170
At3g10260
At3g18260
GO:0005789 endoplasmic reticulum membrane C
IDA
AthAt2g23640
At4g23630
At1g64090
At5g41600
At4g11220
GO:0005794 Golgi apparatus C
IDA
SceS000002641
GO:0005886 plasma membrane C
IDA
AthAt4g11220
At4g23630
At5g41600
At2g46170
At3g61560
GO:0030176 integral to endoplasmic reticulum
membrane		 C
IDA
SceS000002641
TAS
HsaRTN1
GO:0032541 cortical endoplasmic reticulum C
IDA
SceS000002363
S000002641
GO:0003674 molecular_function F
ND
AthAt4g01230
At3g18260
At2g23640
At1g68230
At2g15280
At3g19460
At3g54120
SceS000002363
S000002641
GO:0004871 signal transducer activity F
NAS
HsaRTN1
GO:0006606 protein import into nucleus P
IGI
SceS000002641
GO:0007029 endoplasmic reticulum organization P
IGI
SceS000002641
GO:0007165 signal transduction P
NAS
HsaRTN1
GO:0008104 protein localization P
IGI
SceS000002641
GO:0008150 biological_process P
ND
AthAt1g68230
At1g64090
At4g11220
At5g41600
At2g01240
At3g61560
At2g23640
At3g54120
At4g23630
At2g15280
At4g01230
At3g18260
At3g19460
SceS000002363
GO:0030182 neuron differentiation P
IEP
HsaRTN1

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38734

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RTN1
(S000002641)		 GI:6320439 Q04947
Kluyveromyces lactis (Kla) KLLA0C15081g GI:50305831
Eremothecium gossypii (Ego) AGOS_ABL105W GI:45185125


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
SceS000002641
GO:0005783 endoplasmic reticulum C
IDA
SceS000002641
GO:0005794 Golgi apparatus C
IDA
SceS000002641
GO:0030176 integral to endoplasmic reticulum
membrane		 C
IDA
SceS000002641
GO:0032541 cortical endoplasmic reticulum C
IDA
SceS000002641
GO:0003674 molecular_function F
ND
SceS000002641
GO:0006606 protein import into nucleus P
IGI
SceS000002641
GO:0007029 endoplasmic reticulum organization P
IGI
SceS000002641
GO:0008104 protein localization P
IGI
SceS000002641

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_9329

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago487 ABL105W
Candida glabrata (Cgl) cgl317 CAGL0B02585g
Debaryomyces hansenii (Dha) dha914 DEHA0B05115g
Takifugu rubripes (Fru) fru13524 SINFRUP00000130868
Homo sapiens (Hsa) hsa24703 ENSP00000318179
Kluyveromyces lactis (Kla) kla1875 KLLA0C15081g
Neurospora crassa (Ncr) ncr6180 NCU06361.2
Oryza sativa (Osa) osa60888 6425.m00175
Saccharomyces cerevisiae (Sce) sce1281 YDR233C
(S000002641)
Schizosaccharomyces pombe (Spo) spo2244 SPBC31A8.01c P53694
Yarrowia lipolytica (Yli) yli817 YALI0B01738g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0071786
IMP
SpoSPBC31A8.01c
GO:0005635 nuclear envelope C
IDA
SpoSPBC31A8.01c
GO:0005739 mitochondrion C
IDA
SceS000002641
GO:0005783 endoplasmic reticulum C
IDA
SceS000002641
SpoSPBC31A8.01c
GO:0005794 Golgi apparatus C
IDA
SceS000002641
GO:0016020 membrane C
NAS
SpoSPBC31A8.01c
GO:0030176 integral to endoplasmic reticulum
membrane		 C
IDA
SceS000002641
GO:0032153 cell division site C
IDA
SpoSPBC31A8.01c
GO:0032541 cortical endoplasmic reticulum C
IDA
SceS000002641
SpoSPBC31A8.01c
GO:0003674 molecular_function F
ND
SceS000002641
GO:0005515 protein binding F
IPI
SpoSPBC31A8.01c
GO:0006606 protein import into nucleus P
IGI
SceS000002641
GO:0007029 endoplasmic reticulum organization P
IGI
SceS000002641
GO:0007105 cytokinesis, site selection P
IMP
SpoSPBC31A8.01c
GO:0008104 protein localization P
IGI
SceS000002641
GO:0034613 cellular protein localization P
IMP
SpoSPBC31A8.01c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC31A8.01c
(P53694)		 YDR233C
(S000002641)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0071786
IMP
SpoSPBC31A8.01c
GO:0005635 nuclear envelope C
IDA
SpoSPBC31A8.01c
GO:0005739 mitochondrion C
IDA
SceS000002641
GO:0005783 endoplasmic reticulum C
IDA
SceS000002641
SpoSPBC31A8.01c
GO:0005794 Golgi apparatus C
IDA
SceS000002641
GO:0016020 membrane C
NAS
SpoSPBC31A8.01c
GO:0030176 integral to endoplasmic reticulum
membrane		 C
IDA
SceS000002641
GO:0032153 cell division site C
IDA
SpoSPBC31A8.01c
GO:0032541 cortical endoplasmic reticulum C
IDA
SceS000002641
SpoSPBC31A8.01c
GO:0003674 molecular_function F
ND
SceS000002641
GO:0005515 protein binding F
IPI
SpoSPBC31A8.01c
GO:0006606 protein import into nucleus P
IGI
SceS000002641
GO:0007029 endoplasmic reticulum organization P
IGI
SceS000002641
GO:0007105 cytokinesis, site selection P
IMP
SpoSPBC31A8.01c
GO:0008104 protein localization P
IGI
SceS000002641
GO:0034613 cellular protein localization P
IMP
SpoSPBC31A8.01c

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