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Search term: YDR235W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP42
SGD link S000002643
Alternative ID YDR235W
Description U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats
Synonyms YDR235W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1258 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA processing protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g04080 GI:18379230
Arabidopsis thaliana (Ath) At5g46400 GI:15237433
Caenorhabditis elegans (Cel) CE28000
(WBGene00017768)		 GI:17560124 Q22961
Drosophila melanogaster (Dme) 7301703 GI:7301703
Homo sapiens (Hsa) Hs8922888 GI:8922888
Homo sapiens (Hsa) Hs8923611 GI:8923611
Saccharomyces cerevisiae (Sce) YDR235w
(S000002643)		 GI:6320441 Q03776
Saccharomyces cerevisiae (Sce) YML046w
(S000004509)		 GI:6323596 P39682
Schizosaccharomyces pombe (Spo) SPBC4B4.09 GI:19113218 O74970
Arabidopsis thaliana (Ath) At1g04080 GI:18379230
Arabidopsis thaliana (Ath) At5g46400 GI:15237433
Caenorhabditis elegans (Cel) CE28000
(WBGene00017768)		 GI:17560124 Q22961
Drosophila melanogaster (Dme) 7301703 GI:7301703
Homo sapiens (Hsa) Hs8922888 GI:8922888
Homo sapiens (Hsa) Hs8923611 GI:8923611
Saccharomyces cerevisiae (Sce) YDR235w
(S000002643)		 GI:6320441 Q03776
Saccharomyces cerevisiae (Sce) YML046w
(S000004509)		 GI:6323596 P39682
Schizosaccharomyces pombe (Spo) SPBC4B4.09 GI:19113218 O74970


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IGI
SceS000004509
ISS
SpoSPBC4B4.09
GO:0005685 U1 snRNP C
IDA
SceS000004509
S000002643
SpoSPBC4B4.09
GO:0071004 U2-type prespliceosome C
IDA
SceS000002643
S000004509
GO:0003723 RNA binding F
IDA
SceS000002643
GO:0030627 pre-mRNA 5'-splice site binding F
IGI
SceS000004509
ISS
SpoSPBC4B4.09
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC4B4.09
IGI
SceS000004509
ISS
SpoSPBC4B4.09
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000002643
ISS
SpoSPBC4B4.09
GO:0016071 mRNA metabolic process P
RCA
SceS000004509
GO:0019953 sexual reproduction P
RCA
SceS000004509
GO:0048510 regulation of timing of transition from vegetative
to reproductive phase		 P
IMP
AthAt1g04080

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38735

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) PRP42
(S000002643)		 GI:6320441 Q03776
Kluyveromyces lactis (Kla) KLLA0C15169g GI:50305839
Eremothecium gossypii (Ego) AGOS_ABL108C GI:45185122


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005685 U1 snRNP C
IDA
SceS000002643
GO:0071004 U2-type prespliceosome C
IDA
SceS000002643
GO:0003723 RNA binding F
IDA
SceS000002643
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000002643

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_24594

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago484 ABL108C
Candida glabrata (Cgl) cgl3991 CAGL0K11000g
Debaryomyces hansenii (Dha) dha5325 DEHA0F21120g
Kluyveromyces lactis (Kla) kla1879 KLLA0C15169g
Saccharomyces cerevisiae (Sce) sce1283 YDR235W
(S000002643)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005685 U1 snRNP C
IDA
SceS000002643
GO:0071004 U2-type prespliceosome C
IDA
SceS000002643
GO:0003723 RNA binding F
IDA
SceS000002643
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000002643

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