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Search term: YDR243C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP28
SGD link S000002651
Alternative ID YDR243C
Description RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site
Synonyms YDR243C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0333 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U5 snRNP-like RNA helicase subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g59990 GI:15218967
Arabidopsis thaliana (Ath) At2g33730 GI:15226155
Caenorhabditis elegans (Cel) CE24878 GI:17552912
Caenorhabditis elegans (Cel) CE26887
(WBGene00017162)		 GI:17552914
Drosophila melanogaster (Dme) 7298459 GI:7298459
Homo sapiens (Hsa) Hs4759278 GI:4759278
Homo sapiens (Hsa) Hs17474597 GI:17474597
Homo sapiens (Hsa) Hs17474878 GI:17474878
Saccharomyces cerevisiae (Sce) YDR243c
(S000002651)		 GI:6320449 P23394
Schizosaccharomyces pombe (Spo) SPCC63.11 GI:19075484 Q9Y7T7
Arabidopsis thaliana (Ath) At1g59990 GI:15218967
Arabidopsis thaliana (Ath) At2g33730 GI:15226155
Caenorhabditis elegans (Cel) CE24878 GI:17552912
Caenorhabditis elegans (Cel) CE26887
(WBGene00017162)		 GI:17552914
Drosophila melanogaster (Dme) 7298459 GI:7298459
Homo sapiens (Hsa) Hs4759278 GI:4759278
Homo sapiens (Hsa) Hs17474597 GI:17474597
Homo sapiens (Hsa) Hs17474878 GI:17474878
Saccharomyces cerevisiae (Sce) YDR243c
(S000002651)		 GI:6320449 P23394
Schizosaccharomyces pombe (Spo) SPCC63.11 GI:19075484 Q9Y7T7
Arabidopsis thaliana (Ath) At1g59990 GI:15218967
Arabidopsis thaliana (Ath) At2g33730 GI:15226155
Caenorhabditis elegans (Cel) CE24878 GI:17552912
Caenorhabditis elegans (Cel) CE26887
(WBGene00017162)		 GI:17552914
Drosophila melanogaster (Dme) 7298459 GI:7298459
Homo sapiens (Hsa) Hs4759278 GI:4759278
Homo sapiens (Hsa) Hs17474597 GI:17474597
Homo sapiens (Hsa) Hs17474878 GI:17474878
Saccharomyces cerevisiae (Sce) YDR243c
(S000002651)		 GI:6320449 P23394
Schizosaccharomyces pombe (Spo) SPCC63.11 GI:19075484 Q9Y7T7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt2g33730
CelWBGene00017162
SpoSPCC63.11
GO:0005681 spliceosomal complex C
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0005682 U5 snRNP C
IDA
SceS000002651
GO:0005737 cytoplasm C
IDA
AthAt2g33730
GO:0009507 chloroplast C
IDA
AthAt1g59990
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt2g33730
At1g59990
GO:0000003 reproduction P
IMP
CelWBGene00017162
GO:0000354 cis assembly of pre-catalytic spliceosome P
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00017162
GO:0002119 nematode larval development P
IMP
CelWBGene00017162
GO:0006200 ATP catabolic process P
ISS
SpoSPCC63.11
GO:0007281 germ cell development P
IMP
CelWBGene00017162
GO:0008150 biological_process P
ND
AthAt1g59990
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017162
GO:0010172 embryonic body morphogenesis P
IMP
CelWBGene00017162
GO:0040007 growth P
IMP
CelWBGene00017162
GO:0040011 locomotion P
IMP
CelWBGene00017162
GO:0040021 hermaphrodite germ-line sex determination P
IMP
CelWBGene00017162
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017162
GO:0048589 developmental growth P
IMP
CelWBGene00017162

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
74640

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) PRP28
(S000002651)		 GI:6320449 P23394
Kluyveromyces lactis (Kla) KLLA0C15433g GI:50305859


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005681 spliceosomal complex C
TAS
SceS000002651
GO:0005682 U5 snRNP C
IDA
SceS000002651
GO:0004004 ATP-dependent RNA helicase activity F
TAS
SceS000002651
GO:0000354 cis assembly of pre-catalytic spliceosome P
TAS
SceS000002651

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2104

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9743 ENSANGP00000018513
Ashbya gossypii (Ago) ago3644 AFR452C
Arabidopsis thaliana (Ath) ath10410 At2g33730.1
Caenorhabditis elegans (Cel) cel5396 F01F1.7
(CE26887;
WBGene00017162)
Candida glabrata (Cgl) cgl3998 CAGL0K11198g
Cryptococcus neoformans (Cne) cne2374 181.m08409
Dictyostelium discoideum (Ddi) ddi12296 DDB0219950
Debaryomyces hansenii (Dha) dha4894 DEHA0F11506g
Drosophila melanogaster (Dme) dme2842 CG10333-PA
(FBgn0032690)
Danio rerio (Dre) dre15157 ENSDARP00000007528
(ddx23)		 Q6P9Z2
Danio rerio (Dre) dre23787 ENSDARP00000026296
Danio rerio (Dre) dre23786 ENSDARP00000042281
Takifugu rubripes (Fru) fru31156 SINFRUP00000127811
Takifugu rubripes (Fru) fru31155 SINFRUP00000168852
Homo sapiens (Hsa) hsa7417 ENSP00000310723
(DDX23)		 Q9BUQ8
Homo sapiens (Hsa) hsa7538 ENSP00000321757
Kluyveromyces lactis (Kla) kla1889 KLLA0C15433g
Mus musculus (Mmu) mmu9605 ENSMUSP00000070576
Neurospora crassa (Ncr) ncr2713 NCU02803.2
Oryza sativa (Osa) osa742 902.m00130
Oryza sativa (Osa) osa756 902.m00393
Plasmodium falciparum (Pfa) pfa3634 PFE0925c
Saccharomyces cerevisiae (Sce) sce1291 YDR243C
(S000002651)
Schizosaccharomyces pombe (Spo) spo2116 SPCC63.11 Q9Y7T7
Yarrowia lipolytica (Yli) yli6529 YALI0F28391g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt2g33730
CelWBGene00017162
SpoSPCC63.11
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0032690
SpoSPCC63.11
TAS
SceS000002651
GO:0005682 U5 snRNP C
IDA
SceS000002651
ISS
DmeFBgn0032690
GO:0005737 cytoplasm C
IDA
AthAt2g33730
GO:0020011 apicoplast C
RCA
PfaPFE0925c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0032690
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0032690
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0032690
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0032690
SpoSPCC63.11
TAS
SceS000002651
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt2g33730
GO:0000003 reproduction P
IMP
CelWBGene00017162
GO:0000354 cis assembly of pre-catalytic spliceosome P
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0032690
ISS
DmeFBgn0032690
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00017162
GO:0002119 nematode larval development P
IMP
CelWBGene00017162
GO:0006200 ATP catabolic process P
ISS
SpoSPCC63.11
GO:0007281 germ cell development P
IMP
CelWBGene00017162
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017162
GO:0010172 embryonic body morphogenesis P
IMP
CelWBGene00017162
GO:0040007 growth P
IMP
CelWBGene00017162
GO:0040011 locomotion P
IMP
CelWBGene00017162
GO:0040021 hermaphrodite germ-line sex determination P
IMP
CelWBGene00017162
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017162
GO:0048589 developmental growth P
IMP
CelWBGene00017162

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC63.11
(Q9Y7T7)		 YDR243C
(S000002651)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC63.11
GO:0005681 spliceosomal complex C
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0005682 U5 snRNP C
IDA
SceS000002651
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0000354 cis assembly of pre-catalytic spliceosome P
ISS
SpoSPCC63.11
TAS
SceS000002651
GO:0006200 ATP catabolic process P
ISS
SpoSPCC63.11

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GO info in one table:

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